LOC118964348 (LOC106605991)


Basic Information

Item Value
gene id LOC118964348
gene name LOC106605991
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2546234 ~ 2553372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975424.1
ATGTCCCTGCGAGCAGACACAGCCCagtgtggaggggtggtggtggagctTGAGTCTGATGACATCAGGGAGGCTCGGGCCAGGAAGGCCAGGAGTACATCAGGGTCAGCCCTCATCTACCTCAGGGGCCCTAAATTCCTGATCTACGTCAGTGGGGCACTGTCCATGTGGGGTGACCGTATGTGGCACTTTGCCATTTCGGTGTTCCTGATCGAGCTGTATGGACGGAACCTGCTGCTGACCGCAATATTCGGCTTGGTGGTGGCGGGGTCAGTGCTGCTGTTAGGGGCGTTGATTGGGGACTGGGTTGACCGCAACCCCAGGAACAAAGTGGCGCATGCATCCTTGTTGGTTCAGAACATTTCAGTGACGGTGTGTAGCATTGTGCTGATGTTGGTCTTCTTATATAAACAGTGGATTGAGAGCATTTGGGATGGCTGGTTAACTGTGGTTTGTTATACGGTGGTGATCGTCCTGGCAGATGTGGCTAACCTAGCAAGCACAGCGCTGACCATCGCCATCCAGAGGGACTGGATTGTGGTTATCACTGGATACAACCGGGGGCACCTCGCCGGGATGAATGCTACCATGCGGCGCATCGATCAGGTGACCAACATCCTGGCACCGCTGGCGGTGGGACAGGTCATGACCCTGGCCTCCAATGTGATAGGCTGCGGTTTCATCCTGGGCTGGAACCTGGTGTCCCTCATCGTGGAGTTTATCTTCCTGTCCCGGGTCTACCGCATTGTCCCGGCGCTGTCCGTCAAACCACCTGCGCCCGAGGACGGCCAGGCCTCCCTAGAGAGACCAGCAGAGAGGACGGAGGGactggtggagaggagggggtcaCAAGGTCAGTGTCCTGTTGTCCTGGTCACTctaGAGCATAGTGAGGTGGTGACATCAGCCCCGGGCCTCAGTGATGACGACATGAGCCTGAACCTCAAGGAGGTCACCAACCTGCCTCTGTGTTTTGGACGCTTCCGTTGGCTGCTGAGCACCTGTAAGGACGGCTGGAGGGCCTACTACCGCCAGGATGTCTTCCTGGCTGGGATGGGCCTGGCCTTCCTCTACACAACTGTCCTGGGCTTCGACTGCATCACCACGGGCTACGCCTACACCCAGGGCATCAGTGGCTCCCTGCTCAGTCTGCTGATGGGGGTCTCGGCTATAACAGGCCTCATGGGCACCATCATGTTCACCAAGCTGAGGAAGGCCTACGGTTTAGTCAACACAGGCATCATCTCCAGCTGTCTCCATCTTTGCTgtctgctgctgtgtgtgtgttctgtgttcgcCCCCGGCAGCCCCATGGACCTCCGCCTGCTCAGGCCCTTCCTGGACGCCAACGCCAACTCAACGTTGTCGGCGGCCGGGGGGGTGGTGGAGGGCCAGAGGCAGAAACACACCTACCCGATGCGGGGTGGCATTAATCAGCCGCTGCTGCCCGACCGCTCGTCCATCCACTGGACCAACAACACGGTGCTGTTTGAGAATATGCCATCAGGCATGGAGCCAGACTCCTACATCTCTATAATCCTGCTGTTCTTGGGGGTCATCACAGCACGCATCGGTCTGTGGTCCTTTGACCTGACCGTGACCCAGCTGCTTCAGGAGAACATCTGTGAATCAGAACGTGGTGTGGTCAACGGGGTCCAGAGCTCCATGAACTACTTGATGGACCTTCTCCACTTCATCATGGTCATCTCTGCTCCGCAGCCCCAGCACTTTGGCATCCTGGTCATCATCTCTGTACTGTTCATCACCACAGGACACACAATGTACTTCCTATACGCACGCAAAGCCAAGAGGAAACCTGCTGGATGCCTGGACACGTAGGGAGGCCGTGCGGCTTTCCGCGACAAAGCATGTGCCCAAAGACTCCACTCTGCCTGCGCCTGCCTGTGAAAtgaatgtctcttctctcttgttccctctgCGCTCTCATTGCTAGGCAACAATACAATACTGTAACACTCCTTCCCCACCATCCAGCCATTCATTCATTACAGCACAACACAGCAACTGTCTGTCGTGTCCTCCCCAACCTGGTTGCTATCTCCCTGCATGGTCAGGTGTAGTACGGCCAAGTGCTAAGGTACAGTAACAAACTAGAACTCAGGTAAACTAAAGTAAGATCCACCTTTTCCCTTCTGTACATAGGTTGAGGTGGTCGCAACAGATGCGGTGTTGGTCCCCTACCGTGGTAGGTTCTCCCACCTTAGTGTTGCTCCCATACCGTGGTAGGTTCTCCCACCTTAGTGTTGGTCCCCTACCGTGGTAGGTTCTCCCACCTCAGGAAAAGGGCACAGAGGGCAGgctgaggcagcagcagcagaacaCGCCTTTCCAGACATTTTGGATTACTGCAAGAGCTTCATTATGGCAGTCTGTTGACCGACTCAGAGTTGGGATGGGAattggatggatggattgatgtATTTTTCTAACCCTCACACAGTAAAGAACTGGGCCTGGTGAAGCAGGTGACAgtaacaaaaagaagaagaaacgaGACTTAACAACTTTAACAAGTGGCAAACATGTTACTGCTCCGTCCACTTGGAGATCCAGGAAGTCCAAAAGGAAAACTAAAGGGAAGTTGGTGTCAGGTTGTGAGATACTGAACATTATAAAGGAGACCCCCTTGATGGACAGAAGAGGAAGGCTGTAGTGTCATCTTCTCCTGGTCTGTTTCTCTGTGGATGAATCAGGCAGACATGTGCCTATTGATTAACACATGACATCATTAAAAAAAGATAGAATTTAAACCGGATCGCAGGAACATAGCATAAGAACATAAAGATAGTAAGAAAAAAACAACATGCATTAAAATCAGAGGAAACCAAACGGACCATAATTGCTTGTGTACTTAGATTACTGAAAATAGCTTCCAAATTGTAAATGCTTTCC

Function

NR:

description
solute carrier family 40 member 1-like

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975424.1 True 2913 mRNA 0.53 8 2546234 2553372

Neighbor

gene id symbol gene type direction distance location
LOC118944776 LOC105018831 coding downstream 24324 2461163 ~ 2521910 (-)
LOC118944775 NA coding downstream 157935 2354283 ~ 2388299 (-)
sp8b LOC106573674 coding downstream 254228 2286294 ~ 2292006 (-)
LOC110506602 LOC106595809 coding downstream 296725 2243487 ~ 2249509 (-)
LOC118944471 LOC106573719 coding downstream 316796 2225818 ~ 2229438 (-)
LOC110519055 LOC106606020 coding upstream 13668 2567040 ~ 2581440 (-)
LOC110520772 LOC108270036 coding upstream 29868 2583240 ~ 2604766 (-)
LOC110517891 LOC106606082 coding upstream 302726 2856098 ~ 2869094 (-)
c4b c4 coding upstream 335699 2889071 ~ 2916355 (-)
LOC118964349 LOC106573444 coding upstream 410274 2963646 ~ 2988272 (-)
G216411 NA non-coding downstream 21692 2524335 ~ 2524542 (-)
G216391 NA non-coding downstream 61261 2484522 ~ 2484973 (-)
G216390 NA non-coding downstream 62195 2483834 ~ 2484039 (-)
G216271 NA non-coding downstream 169466 2376533 ~ 2376768 (-)
G216464 NA non-coding upstream 14725 2568097 ~ 2570484 (-)
G216757 NA non-coding upstream 75332 2628704 ~ 2628916 (-)
G216765 NA non-coding upstream 95545 2648917 ~ 2649344 (-)
G216767 NA non-coding upstream 100906 2654278 ~ 2654615 (-)
G216768 NA non-coding upstream 101831 2655203 ~ 2655421 (-)
G216059 NA other downstream 420882 2124176 ~ 2125352 (-)
G216066 NA other downstream 424377 2121203 ~ 2121857 (-)
G216038 NA other downstream 487805 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 593646 1916571 ~ 1953363 (-)
LOC110519742 LOC106595845 other downstream 883167 1661660 ~ 1673583 (-)
G216811 NA other upstream 183489 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 492633 3046005 ~ 3059744 (-)
G217261 NA other upstream 784814 3338186 ~ 3338580 (-)
G217459 NA other upstream 1133030 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1885724 4439096 ~ 4440437 (-)

Expression


Co-expression Network