LOC110519055 (LOC106606020)


Basic Information

Item Value
gene id LOC110519055
gene name LOC106606020
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2567040 ~ 2581440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965694.1
TGTAGGCGTGTGCAATGCGCCTCACATCCATCCAAGACATTGATTATAATCGGGAACAGTTTGCCCTTATTAATAGCCTCCTTTGAACAGTGGATTACACATTCATTGGACTCCATAGAAAGTAGTCATATTTTCCATTTGCATTGAGCCTGTCCATCTGCGTGGAAGGAACCATGAGGTGTTTACAGGTGTCCAACCAAGGCCTGGAAGAAAGGATCCCTTCCTATGAGGAACTGGAAAAGCTGGAGAATGAGGAGGCTGGGGACAGACCCAAATGGGACAACAAGGCCCAGTACATGTTGACTATCGTAGGTTTCTGTGTGGGACTGGGGAACGTCTGGCGCTTCCCGTACCTTTGCCAGAGCCATGGGGGAGGTGCATTCATGATTCCTTTCCTGATCCTACTGGTTCTAGAAGGTGTTCCCCTGCTCCATCTGGAGTTTGCTATTGGTCAACGTCTAAGGAAAGGCAGTGTAGGTGTCTGGTCTGCCATCCATCCATACTTGACTGGCATTGGCATTGGATCCATGTGTGTGTCCTTTCTGGTCAGCCTGTACTACAACACCATCATGGCCTGGGTGATGTGGTACTTCTTTAACTCCTTCCAAGAGACGCTGCCTTGGAGCCAATGTCCGGTCAATGCCAACATGACAGGCCTGGTGTCAGAGTGTGAAAGAAGCTCTCCAGTGGATTACTATTGGTACAGAGAGACCCTGAACACCACTCCAGACATAGATAACACAGGTGGGCTACAGTGGTGGATGGTCCTATGCCATGTGTCTGCCTGGGCGTTGCTGTTTATCTGCATAAGTCGAGGCATTGAGACTACTGGGAAGGCTGTGTATATCACCTCAACATTACCTTATGTGGTGCTGACCATCTTTCTGATCAGAGGCTTGACCTTGAAAGGCTCCTTGAATGGAGTGAAGTTCCTCTTCACCCCAGATaTGAATGAACTAATGAACCCAACGACGTGGCTTGATGCGGGTGCCCAGGTTTTCTATTCATTCTCTTTGGCCTTTGGAGGTCTGCTGTCTTTCTCCAGCTACAACTCCGTGCATAATAACTGTGAACAGGATGCAGTCATCATCTCTATCGTGAACGGAGCCACTGCTGTCTACGCTGCAACAGTCATTTACACCATCATTGGCTTCCGAGCCACAGAGAAGTTTGATGACTGTATTTCTGGAAATATCCTGACCCTGCTGAATACATTTGATCTCCCAGAGGGCAACGTCACTGAGGGCAACTATGATCAGGTTCTTCATAGTCTCAATGGAACATATCCAGAGGTCATTCAGGGTCTCAACTTGAAGACCTGTGATTTGAATTCTTTCCTTAGTGAGGGGGTTGAAGGAACTGGTCTGGCCTTTATCGTGTTCACAGAGGCCATCACTAAGATGCCTGTATCTCCTGTTTGGTCAGTCTTGTTCTTCATCATGCTCTTCTGTCTCGGCCTGTCCTCCATGTTTGGCAATATCGAAGGAGTTCTGGTACCACTTCAGGACCTGGGTGTTTTCCCCAAGAGTTGGCCCAAAGAAGCCATCGCTGGGATAACATGTGTCCTCTGCTGCCTTGTTGGATTAATATTTGTTCAAGGCTCAGGGAACTACTGGCTGTCCCTCTTTGACAGCTATGGCGGGTCCATTCCTCTGCTGATCATTGCATTCTGTGAGATGGTCGGGGTTGTGTACCTCTATGGTATTGATAGGTTCAACGATGATATTGAGTTCATGATCGGCCACAAGCCCAACCTCTTCTGGCAGATCACATGGAGATTTGTCAGCCCCGCCATCATGTTTGTCATCTTTGTGTTCTACTTTATCACTAAAGTCCAAGAAACACCCATGTACAAAGCCTGGAATCCTGAATCGGACAACTTCCCTACATTGGAGGAGAAGGAATATCCAACCTGGATCTTTGCTATAATCTTCATCCTGGCAGGAATCCCAGGTCTTTCTGTACCTCTTACGGCTATTTACAAATGTTTGAGGAACCGCTGCTGCAAGAAGGATAATGAGTTTAAACAAGATGACTTAAACACTATTGCCAAGCAAGTTCAACTGACGGATGAGGCTACCAAGAACAAACCAGACATCCCAGAGACAGCAGATGGAAGATAGTGATCAAATCACTAGCCCATTGTTGTTTTCATGACAGGCCTCCATTTATTTCCTTCATGCCACTGATAGCTGAAAGGAGTAGAAACGTTTGATAGTTTTACAAGGTTGTATGGATGAGGTATGACAGAAAAGCCATCAAAGCTTACATTGATTGACACATTGTTGTAATTTTTGTGCTGAATAGTCAACATTAAACTAAATTATA

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05334 SLC6A19; solute carrier family 6 (neurotransmitter transporter) member 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965694.1 True 2328 mRNA 0.46 12 2567040 2581440

Neighbor

gene id symbol gene type direction distance location
LOC118964348 LOC106605991 coding downstream 13668 2546234 ~ 2553372 (-)
LOC118944776 LOC105018831 coding downstream 45130 2461163 ~ 2521910 (-)
LOC118944775 NA coding downstream 178741 2354283 ~ 2388299 (-)
sp8b LOC106573674 coding downstream 275034 2286294 ~ 2292006 (-)
LOC110506602 LOC106595809 coding downstream 317531 2243487 ~ 2249509 (-)
LOC110520772 LOC108270036 coding upstream 1800 2583240 ~ 2604766 (-)
LOC110517891 LOC106606082 coding upstream 274658 2856098 ~ 2869094 (-)
c4b c4 coding upstream 307631 2889071 ~ 2916355 (-)
LOC118964349 LOC106573444 coding upstream 382206 2963646 ~ 2988272 (-)
LOC110520729 LOC106606076 coding upstream 410784 2992224 ~ 2997425 (-)
G216411 NA non-coding downstream 42498 2524335 ~ 2524542 (-)
G216391 NA non-coding downstream 82067 2484522 ~ 2484973 (-)
G216390 NA non-coding downstream 83001 2483834 ~ 2484039 (-)
G216271 NA non-coding downstream 190272 2376533 ~ 2376768 (-)
G216757 NA non-coding upstream 47264 2628704 ~ 2628916 (-)
G216765 NA non-coding upstream 67477 2648917 ~ 2649344 (-)
G216767 NA non-coding upstream 72838 2654278 ~ 2654615 (-)
G216768 NA non-coding upstream 73763 2655203 ~ 2655421 (-)
G216775 NA non-coding upstream 83724 2665164 ~ 2665590 (-)
G216059 NA other downstream 441688 2124176 ~ 2125352 (-)
G216066 NA other downstream 445183 2121203 ~ 2121857 (-)
G216038 NA other downstream 508611 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 614452 1916571 ~ 1953363 (-)
LOC110519742 LOC106595845 other downstream 903973 1661660 ~ 1673583 (-)
G216811 NA other upstream 155421 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 464565 3046005 ~ 3059744 (-)
G217261 NA other upstream 756746 3338186 ~ 3338580 (-)
G217459 NA other upstream 1104962 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1857656 4439096 ~ 4440437 (-)

Expression


Co-expression Network