LOC110520772 (LOC108270036)


Basic Information

Item Value
gene id LOC110520772
gene name LOC108270036
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2583240 ~ 2604766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965697.1
ATAACTTCTCGTGTCACTCTTCAGCTTGGTAAAGCAATCATCTACTAAACAAGTTCAGCTGAAAGGCTGTTTTGCAAAGTTGGCAACCAGTTTTTCCACACCTCAGCTAGTGTTCCAGCTACCGGTTACCTAGAGACCAGCCACACCACCTGTCACACTGCTGAACCTGGCCATCTACACCCGAGGAACCATGAGACTACAGCTGCCCAACCCAGGCCTGGAAGACAGGATCCTGTCCCATGAGGAGCTGGACAAGCTGGAGACGGaagaggctgggaggggagacAGGCCCAAATGGGACAACAAGACTCAATACATGCTCACCTGCGTGGGGTTCTGTGTGGGGCTGGGGAACGTATGGAGATTCCCTTACTTGTGCCAGAGTCATGGGGGAgGTGCATTCATGATTCCTTTCCTGATCCTACTGGTTCTAGAAGGTGTTCCCCTGCTCCATCTGGAGTTTGCTATTGGTCAACGTCTAAGGAAAGGCAGTTTAGGCGTGTGGTCAACAATTCATCCTTACTTAGCTGGAGTTGGCATAGCGTCCATGTTTGTTTCTTTGATGATCAGCCTGTACTACAACACCATCATGGCCTGGGTGATGTGGTACTTATTTAACTCCTTCCAAGAGACGCTGCCTTGGAGCCAATGTCCCCCCAATTACAATCTAACAGGCCTGGTGTCAGAGTGTGAGCAGAGCTCTCCAGTGGACTACTTCTGGTACAGAGAGACGCTGAACACCACCCCGGACATTGGTGCGAACGGGGGTCTGCAGTGGTGGATGGTGCTGTGTCTGGTCAGTGCCTGGGCCGTGCTCTATATCTGCATCATCCGAGGCATCGAGACCACTGGGAAGGCTGTGTATGTCACCTCAACGCTGCCCTACGTAGTGTTGAGCATTTTCCTGATCAGAGGTCTGATTTTGAAAGGCTCTTTGAGTGGAGTTGTGTTTCTCTTCACCCCGAACTTGACAGAGCTGACCAACCCAACTACCTGGCTGGATGCAGGTGCCCAGGTGTTCTATTCCTTCTCCATAGCATTTGGTGGACTCATCTCTTTTTCGAGCTACAACTCTGTGCATAACAACTGTGAACAGGATGCAGTGATCATCTCTGCCGTCAATGGCTTCACCTCCGTCTACGCTGCAACCGTCATCTACACCATCATTGGCTTCAGAGCCACAGAGAGATTTGACAACTGTCTTGGCGGAAATATCCTGGCGCTGCTGAATACATTTGATCTCCCCGAGGGAAACGTCACTGAGAGCAACTATGATCAGGTTCTCCAGAGTCTCAATGGAACATATCCAGAGGTCATTCAGGGACTCAACTTGAAGACCTGTGACTTGAACACTTTCCTCAGCGAGGGGGTTGAAGGAACTGGTCTGGCCTTTATCGTGTTCACAGAGGCCATCACTAAGATGCCTGCATCTCCTGTTTGGTCAGTCTTGTTCTTCATCATGCTCTTCTGTCTCGGCCTGTCCTCCATGTTTGGCAATATCGAAGGAGTTCTGGTACCACTTCAGGACCTGGGGGTTTTCCCCAAGAGTTGGCCCAAGGAGTCCACCACAGGGATAACATGTGTCCTCTGCTGCATTGTTGGACTGATATTTGTCCAAGGCTCAGGGAACTACTGGCTGTCCCTCTTTGACAGCTTTGCTGGTTCCATTCCTCTGCTGATCATTGCATTCTGTGAGATGGGCGGGGTTGTGTACCTCTATGGTATTGATAGgtTCAACGATGATATTGAGTTCATGATCGGCCACAAGCCCAACTTCTTTTGGCAGATCACATGGAGATTTCTCAGCCCCGCCATCATGCTTGTCATCTTTGTGTTCTACTTTATCACTAAAGTCACCGAAACGCTCCTATATAAAACCTGGAATCCTGAATCGGAAAACTTCCCTACATTGGAGGAGAAGCCCTATCCAGCCTGGATCTATGTAATAATCTTTATCCTGGCAGGGATACCCAGTCTAGCTGTGCCTGGCACTGCTCTCTTCAGATGTTTACGGAGGAAGAGAAGTAGAAAGTCTGAACAGCAAGAGCTCAAAACAGTCTGTAACCAAATGGACGTGAACGACAAGGCTCAGGATGGAGAATCCCGTACCTGATTACCCGTAATAACTCACCACCAATaaaaactaaagaaaaacaaagCCTTTAACGTATATTAATTTTCATAAACGTATGTACTGTTATAATTTATTAATCACTGtttctttcatttctttcattctGTAAAGTGAGACATTTTTAGCATAGTATTGCTGTAGAACTTGTACACTGATATGTCTATGAATGAAAACTGTCGTATCTGAGGATGCTTCTTAGATCGAGGACTCCGGACACCCAAGTACATGTTAGTATTTCATTGTAACTTAGAATAACATTACAGGAATGTAGCTGGCACAAGCTACCTGAGGCCTCTTGAGGTTAAAGCAGACATTAAAGGGCTACGGATAGTGGGAAGCAAACTACATATTGAGTCAATACTGCCATCTATTGGTAAACATAATActtaacatacactgagtgtacaaaacattaagaacacctgctctttacatgacacagactgaccaggtgaaag

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05334 SLC6A19; solute carrier family 6 (neurotransmitter transporter) member 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965697.1 True 2592 mRNA 0.47 12 2583240 2604766
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110519055 LOC106606020 coding downstream 1800 2567040 ~ 2581440 (-)
LOC118964348 LOC106605991 coding downstream 29868 2546234 ~ 2553372 (-)
LOC118944776 LOC105018831 coding downstream 61330 2461163 ~ 2521910 (-)
LOC118944775 NA coding downstream 194941 2354283 ~ 2388299 (-)
sp8b LOC106573674 coding downstream 291234 2286294 ~ 2292006 (-)
LOC110517891 LOC106606082 coding upstream 251332 2856098 ~ 2869094 (-)
c4b c4 coding upstream 284305 2889071 ~ 2916355 (-)
LOC118964349 LOC106573444 coding upstream 358880 2963646 ~ 2988272 (-)
LOC110520729 LOC106606076 coding upstream 387458 2992224 ~ 2997425 (-)
LOC110506699 LOC106606088 coding upstream 418042 3022808 ~ 3058765 (-)
G216464 NA non-coding downstream 12756 2568097 ~ 2570484 (-)
G216411 NA non-coding downstream 58698 2524335 ~ 2524542 (-)
G216391 NA non-coding downstream 98267 2484522 ~ 2484973 (-)
G216390 NA non-coding downstream 99201 2483834 ~ 2484039 (-)
G216757 NA non-coding upstream 23938 2628704 ~ 2628916 (-)
G216765 NA non-coding upstream 44151 2648917 ~ 2649344 (-)
G216767 NA non-coding upstream 49512 2654278 ~ 2654615 (-)
G216768 NA non-coding upstream 50437 2655203 ~ 2655421 (-)
G216775 NA non-coding upstream 60398 2665164 ~ 2665590 (-)
G216059 NA other downstream 457888 2124176 ~ 2125352 (-)
G216066 NA other downstream 461383 2121203 ~ 2121857 (-)
G216038 NA other downstream 524811 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 630652 1916571 ~ 1953363 (-)
LOC110519742 LOC106595845 other downstream 920173 1661660 ~ 1673583 (-)
G216811 NA other upstream 132095 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 441239 3046005 ~ 3059744 (-)
G217261 NA other upstream 733420 3338186 ~ 3338580 (-)
G217459 NA other upstream 1081636 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1834330 4439096 ~ 4440437 (-)

Expression

LOC110520772(LOC108270036) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110520772(LOC108270036) Expression in each Bioproject

Bar chart with 12 bars.
LOC110520772(LOC108270036) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network