LOC110517891 (LOC106606082)


Basic Information

Item Value
gene id LOC110517891
gene name LOC106606082
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2856098 ~ 2869094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965710.1
GAGCCAACATGGCTTCCTTTCCGTGTAAACAACAACAGCATCAAGTAAACGGGGTTAGAGTGTAGGCCTATTACCTCGCATTTGGTCCGTCTCTTGGATTTCGCAAATAATATGCAACTAGAAATAGTTATGTAACCTACAACGATGTGCCGAAGGTGTTTCTAATTATTGTCCTAAAGACAACTCAACATCCTATTCTCCGCTGGGTAGCTCAATAGCCATGTCATCGCATCAGCCCACCAGTTCAGCTTCCAACAGTCCCACCAGCACCTTTGGCTCGCCTTTCTCAGTCATCAGCCCCTCACTGGGCTCCCCTGGTGTGGCACCCTCCATGGGTTATGGGCCTATTAGCAGTAGCCAGATCAACTCTACAATGGGGATGCACTCAATCAGCAGCTCGGATGATGTCAAACCCCCGTTTGGCTTGAGGCCTATGTCTGCACACAGCCCTGGGATAATGCTCTCCCAGAAACGCATGTGTGCCATCTGTGGAGACCGCTCCTCTGGTAAGCACTATGGTGTGTACAGCTGTGAAGGTTGCAAGGGCTTCTTCAAACGCACAGTGCGCAAGGACCTGAGCTACACCTGCAGGGATAACAAAGAATGCCTGGTGGACAAGCGCCAGCGCAATCGCTGCCAGTACTGTCGCTACCAGAAGTGTCTGGCTATGGGCATGAAGAGGGAAGTGGTCCAAGATGAACGTCAGAAATCAGTCCAGGAGGAGCGTCAGAGGATCAGGGAGCGAGAGGAGGGACTGGAGTGCAGCAGTGCTGTGAACGAGGAGATGCCCGTGGAGAAGATCTTGGAGGCAGAGACGTCCGTGGAGCAGAGGGCGGAGCTCCACTCTGATACAGGCTCCGCTGGTAGCTCTCCCCATGATGCGGTGACAAACATCTGCCAGACTGCAGACAAGCAGCTGTTTGCGTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTCTCTGAGCTGCCCCTGGACGACCAGGTCATCCTCCTGCGTGCAGggtggaATGAACTTCTGATCGCCTCCTTCTCACACCGCTCCATCGCTGTGAAGGACGGGGTCCTGCTGGCCAATGAGCTACACCGGGACAACGCACACAGTGCAGGGGTGGCGGCCATCTTTGACAGGGAGAGTGTGCAGAGTGCTGAGGTGGGAGCCATATTTGACCGGGTTCTCACTGAGCTGGTCAGTAAGATGAGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTCCGAGCCATCGTCCTCTTCAACCCAGATGCTAAAGGTCTGTCCAACACCGGAGAGGTGGAGCTCCTGAGAGAGAAGGTCTATGCGTCACTGGAAGCCTACTGCAAGCAGAAATACCCCGAGCAGCAGGGAAGGTTTGCTAAGCTCCTCCTCAGGCTGCCAGCACTGCGTTCTATTGGCTTGAAGTGTTTGGAGCACCTGTTCTTCTTCAAGCTGATTGGTGACACCCCTATCGACACGTTCCTCATGGAAATGCTTGAAGCACCTCATCAGTTGGCATAGAggtggtaggagaggagaggtgttctgTGGCCGGGGTTAGATAGCTTGGGTCTGGGAATTTGCTGGAGTGGGACTGCACTTTTAGTTCTTTGGGGAATTCAGCATTTTGTCTCACTGCTGTCTGGGTTATGCTATTTAGTTCACCACCACATTGTCTCTTTCAGAACATACATCCCCAAGATGGCTGGTGCTATATATTAATATAACTTCTTGAATAActgagatttaaaaaataaaaagtaaagtaTTTTGTAAGAATGGGAACCTTTAGTTCCTGTACTCTGGCTTATTGAAGCTACAATCTGGGTTTCTGTTTTTCTATAACTATGTTAATGCTTTTTAGACAAACCCCAAATGATCAAGTTCAATTCTGGTAATGATCTCCCCCCGTAACCTGTTTTTAAATGAAGGTAACCTGGATGCAACCAGACTGTCATtctacctttttattttatttgtaattggAACAAAATCTTTTTGAAAAAacttgaaaaacatgttttattgtcaAATCTTGGGCAAGTACATTACTGTACCAAGCGAGCGCTCACTGCGTAACATGTCTGACTTTCAGCTCCTAGTGGTTTTGTATCCCTCTCAGATGACCAGAAAGCAACACGTAGAACCTGGGATACAGAAGGAGTAGTTGAATCACAATGGAACACGGAGCAGACTTGTACTGACTGTGTTGACCAGCTTTATTTGTCTAGTAATATGCTGTTAGCATTGTTTCTCTTTGCTGTTTTGTAAAATGTAATCACCTCGCAGGCAAAAAGATTGAGCTGCATTGCACATTTTTGCTATGTACTATTTCTACACCATACAATACAAGTCATCAAATGTCTGGCCAGCAAACAGTCTTTTGGTGCTATACGACAGACATTTGCCATACTTCATTGCAGCCATACACCAAACTGCAAACAGGAAGAattatgcaacaaaaaaacaaaaaaaactaactGAAATGTTGTAAATGTAGCAATACAAAAATGAATACATATGCTTTCTTTCTGCTTGACAGCTTGTCCGTTCTGGGGGTTTTACAAAGTCATTGTCTGTTAGAAAGGGAATACTCCAGTATGTCATTTATCGAAACAATTGTAAGGTACTGTGCAAAATTTGTTCAGGGAAAATACTATATATTGATAGGTTTGAATAATGAGATCAGGAGACAGACATGATGTAATAATTGATATGTGCCCTTGCTATTAGTTCACCAATTGTATAGAGCAGATCATGTCTTAGGTTGTACTGGATTCCCTAAAGCACTGTTTCTACCTGGTTATAACATgtatcctttgtcttgatcatgtctacattctgattgtgcccacattttcagaCCAGTGTAGATGATTTAAAAAAGGCATTGTGATCAGATCATCCTGACCACCCCCGAAGGTAGTCAGGCACACATTGTGTCTGGATATCGTACAAGTGTAGACATATGGGCAGTGAATCCATTTAAATCACAATTATAACACCTTCTAAAATATTGACATTTAGCACCTTTGTCTTATGGCATCAATATGTGTCTTAAAATAAATATgtattattttgaaagaatagcTCTCAAATCATTTGCATATAGGGAGGGACCAGGAAGTCTGGTCACAGTGCAATTGGTGGATAGATACAAGACCCATTTTACTAccatgtggacaagatcaggacagaGGACTGGGGTTTGCACCAGGTATAAACAAGGATTCACACATTCAGCTGAATCTCATCTTTTTGAATTTTTCTGTGCTTTCTGTAGTAGTAGTTTTTCCTGTTTCCTTTTTTTGAGCTAGTtgttcatcctctcctccctgcttACAAAACACACACCGTTATCATGTTTAAATATCCATAACACCTGTGGACATAGACACATTAAACAAGACCAAATAGGAGTTTTGTGTGATGATCATGTGTGAACACCTGAACAAGGGTATTGGTATGTGTGATGATCCTGTGTAaactctggagcaggttagtGATCCGTGTGGATCAGTGAATTACAGCTTGGGTAATGTGGACTGAAAATAAAGAGGTTGGACTTTTCTTGTCGA
>XM_036965714.1
GAGCCAACATGGCTTCCTTTCCGTGTAAACAACAACAGCATCAAGTAAACGGGGTTAGAGTGTAGGCCTATTACCTCGCATTTGGTCCGTCTCTTGGATTTCGCAAATAATATGCAACTAGAAATAGTTATGTAACCTACAACGATGTGCCGAAGGTGTTTCTAATTATTGTCCTAAAGACAACTCAACATCCTATTCTCCGCTGGGTAGCTCAATAGCCATGTCATCGCATCAGCCCACCAGTTCAGCTTCCAACAGTCCCACCAGCACCTTTGGCTCGCCTTTCTCAGTCATCAGCCCCTCACTGGGCTCCCCTGGTGTGGCACCCTCCATGGGTTATGGGCCTATTAGCAGTAGCCAGATCAACTCTACAATGGGGATGCACTCAATCAGCAGCTCGGATGATGTCAAACCCCCGTTTGGCTTGAGGCCTATGTCTGCACACAGCCCTGGGATAATGCTCTCCCAGAAACGCATGTGTGCCATCTGTGGAGACCGCTCCTCTGGTAAGCACTATGGTGTGTACAGCTGTGAAGGTTGCAAGGGCTTCTTCAAACGCACAGTGCGCAAGGACCTGAGCTACACCTGCAGGGATAACAAAGAATGCCTGGTGGACAAGCGCCAGCGCAATCGCTGCCAGTACTGTCGCTACCAGAAGTGTCTGGCTATGGGCATGAAGAGGGAAGTGGTCCAAGATGAACGTCAGAAATCAGTCCAGGAGGAGCGTCAGAGGATCAGGGAGCGAGAGGAGGGACTGGAGTGCAGCAGTGCTGTGAACGAGGAGATGCCCGTGGAGAAGATCTTGGAGGCAGAGACGTCCGTGGAGCAGAGGGCGGAGCTCCACTCTGATACAGGCTCCGCTGGTAGCTCTCCCCATGATGCGGTGACAAACATCTGCCAGACTGCAGACAAGCAGCTGTTTGCGTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTCTCTGAGCTGCCCCTGGACGACCAGGTCATCCTCCTGCGTGCAGggtggaATGAACTTCTGATCGCCTCCTTCTCACACCGCTCCATCGCTGTGAAGGACGGGGTCCTGCTGGCCAATGAGCTACACCGGGACAACGCACACAGTGCAGGGGTGGCGGCCATCTTTGACAGGGAGAGTGTGCAGAGTGCTGAGGTGGGAGCCATATTTGACCGGGTTCTCACTGAGCTGGTCAGTAAGATGAGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTCCGAGCCATCGTCCTCTTCAACCCAGATGCTAAAGGTCTGTCCAACACCGGAGAGGTGGAGCTCCTGAGAGAGAAGGTCTATGCGTCACTGGAAGCCTACTGCAAGCAGAAATACCCCGAGCAGCAGGGAAGGTTTGCTAAGCTCCTCCTCAGGCTGCCAGCACTGCGTTCTATTGGCTTGAAGTGTTTGGAGCACCTGTTCTTCTTCAAGCTGATTGGTGACACCCCTATCGACACGTTCCTCATGGAAATGCTTGAAGCACCTCATCAGTTGGCATAGAggtggtaggagaggagaggtgttctgTGGCCGGGGTTAGATAGCTTGGGTCTGGGAATTTGCTGGAGTGGGACTGCACTTTTAGTTCTTTGGGGAATTCAGCATTTTGTCTCACTGCTGTCTGGGTTATGCTATTTAGTTCACCACCACATTGTCTCTTTCAGAACATACATCCCCAAGATGGCTGGTGCTATATATTAATATAACTTCTTGAATAActgagatttaaaaaataaaaagtaaagtaTTTTGTAAGAATGGGAACCTTTAGTTCCTGTACTCTGGCTTATTGAAGCTACAATCTGGGTTTCTGTTTTTCTATAACTATGTTAATGCTTTTTAGACAAACCCCAAATGATCAAGTTCAATTCTGGTAATGATCTCCCCCCGTAACCTGTTTTTAAATGAAGGTAACCTGGATGCAACCAGACTGTCATtctacctttttattttatttgtaattggAACAAAATCTTTTTGAAAAAacttgaaaaacatgttttattgtcaAATCTTGGGCAAGTACATTACTGTACCAAGCGAGCGCTCACTGCGTAACATGTCTGACTTTCAGCTCCTAGTGGTTTTGTATCCCTCTCAGATGACCAGAAAGCAACACGTAGAACCTGGGATACAGAAGGAGTAGTTGAATCACAATGGAACACGGAGCAGACTTGTACTGACTGTGTTGACCAGCTTTATTTGTCTAGTAATATGCTGTTAGCATTGTTTCTCTTTGCTGTTTTGTAAAATGTAATCACCTCGCAGGCAAAAAGATTGAGCTGCATTGCACATTTTTGCTATGTACTATTTCTACACCATACAATACAAGTCATCAAATGTCTGGCCAGCAAACAGTCTTTTGGTGCTATACGACAGACATTTGCCATACTTCATTGCAGCCATACACCAAACTGCAAACAGGAAGAattatgcaacaaaaaaacaaaaaaaactaactGAAATGTTGTAAATGTAGCAATACAAAAATGAATACATATGCTTTCTTTCTGCTTGACAGCTTGTCCGTTCTGGGGGTTTTACAAAGTCATTGTCTGTTAGAAAGGGAATACTCCAGTATGTCATTTATCGAAACAATTGTAAGGTACTGTGCAAAATTTGTTCAGGGAAAATACTATATATTGATAGGTTTGAATAATGAGATCAGGAGACAGACATGATGTAATAATTGATATGTGCCCTTGCTATTAGTTCACCAATTGTATAGAGCAGATCATGTCTTAGGTTGTACTGGATTCCCTAAAGCACTGTTTCTACCTGGTTATAACATgtatcctttgtcttgatcatgtctacattctgattgtgcccacattttcagaCCAGTGTAGATGATTTAAAAAAGGCATTGTGATCAGATCATCCTGACCACCCCCGAAGGTAGTCAGGCACACATTGTGTCTGGATATCGTACAAGTGTAGACATATGGGCAGTGAATCCATTTAAATCACAATTATAACACCTTCTAAAATATTGACATTTAGCACCTTTGTCTTATGGCATCAATATGTGTCTTAAAATAAATATgtattattttgaaagaatagcTCTCAAATCATTTGCATATAGGGAGGGACCAGGAAGTCTGGTCACAGTGCAATTGGTGGATAGATACAAGACCCATTTTACTAccatgtggacaagatcaggacagaGGACTGGGGTTTGCACCAGGTATAAACAAGGATTCACACATTCAGCTGAATCTCATCTTTTTGAATTTTTCTGTGCTTTCTGTAGTAGTAGTTTTTCCTGTTTCCTTTTTTTGAGCTAGTtgttcatcctctcctccctgcttACAAAACACACACCGTTATCATGTTTAAATATCCATAACACCTGTGGACATAGACACATTAAACAAGACCAAATAGGAGTTTTGTGTGATGATCATGTGTGAACACCTGAACAAGGGTATTGGTATGTGTGATGATCCTGTGTAaactctggagcaggttagtGATCCGTGTGGATCAGTGAATTACAGCTTGGGTAATGTGGACTGAAAATAAAGAGGTTGGACTTTTCTTGTCGA

Function

NR:

description
retinoic acid receptor RXR-beta-A-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14030 NR2B4, usp; nuclear receptor subfamily 2 group B member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965710.1 False 3573 mRNA 0.45 12 2856098 2869094
XM_036965714.1 True 3573 mRNA 0.45 13 2856098 2869094

Neighbor

gene id symbol gene type direction distance location
LOC110520772 LOC108270036 coding downstream 251332 2583240 ~ 2604766 (-)
LOC110519055 LOC106606020 coding downstream 274658 2567040 ~ 2581440 (-)
LOC118964348 LOC106605991 coding downstream 302726 2546234 ~ 2553372 (-)
LOC118944776 LOC105018831 coding downstream 334188 2461163 ~ 2521910 (-)
LOC118944775 NA coding downstream 467799 2354283 ~ 2388299 (-)
c4b c4 coding upstream 19977 2889071 ~ 2916355 (-)
LOC118964349 LOC106573444 coding upstream 94552 2963646 ~ 2988272 (-)
LOC110520729 LOC106606076 coding upstream 123130 2992224 ~ 2997425 (-)
LOC110506699 LOC106606088 coding upstream 153714 3022808 ~ 3058765 (-)
LOC110506785 LOC106593475 coding upstream 189235 3058329 ~ 3076503 (-)
G216859 NA non-coding downstream 2761 2849231 ~ 2853337 (-)
G216837 fhod3 non-coding downstream 42429 2809997 ~ 2813669 (-)
G216819 NA non-coding downstream 80800 2772490 ~ 2775298 (-)
G216814 NA non-coding downstream 90164 2765075 ~ 2765934 (-)
G216810 NA non-coding downstream 120333 2735534 ~ 2735765 (-)
G216868 LOC106605921 non-coding upstream 6096 2875190 ~ 2886434 (-)
G216871 NA non-coding upstream 38218 2907312 ~ 2981783 (-)
G216874 NA non-coding upstream 49685 2918779 ~ 2921114 (-)
G216877 LOC106606081 non-coding upstream 60005 2929099 ~ 2931363 (-)
G216892 NA non-coding upstream 89462 2958556 ~ 2959009 (-)
G216811 NA other downstream 117631 2736861 ~ 2738467 (-)
G216059 NA other downstream 730746 2124176 ~ 2125352 (-)
G216066 NA other downstream 734241 2121203 ~ 2121857 (-)
G216038 NA other downstream 797669 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 903510 1916571 ~ 1953363 (-)
G216902 LOC106606079 other upstream 176911 3046005 ~ 3059744 (-)
G217261 NA other upstream 469092 3338186 ~ 3338580 (-)
G217459 NA other upstream 817308 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1570002 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1669568 4535483 ~ 4553394 (-)

Expression


Co-expression Network