LOC110520728 (LOC106606086)


Basic Information

Item Value
gene id LOC110520728
gene name LOC106606086
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2950365 ~ 2963921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965749.1
GTCAACATGTTACTGAGATATCCAAGGATATCGGTCGTGGTTGTACAATTTctcagctgttttttttttcccTTGAAATAATAGTTGGTTATCCAGAGGGTCAAGACAAGACAATATTTACCCATCCTTGAGCAGGACCATGCTAACAGTGAAGAGGGGTGGCACATGCAGGGTCTGTCAGGAGTCCTGTATAAAAGGGAAGACCAGAGTGAAAGGGGATTTTTGGGGGGACAGGGAGAGTGAGACTTAAAGCCTGCATAATGACAGCATATGTGTCAGTGGTGATTGTGGGTGCTGTGGTCATGCTTACACTGTTATGGATCCTGCTCATCTACCTCCCTGGAAAAGGAGACAAAGTTACACAGGGAGAACCCAATGGATGTCAGTCAGCGGCTGTTGGGTCTAGACTTCTGCACTCTTTCTATCAGTtctttccctgttctctctctccctctctccctggccctctctctctccctctgctgggCAACATGCTGGAGCTGGCACACGACCACCTGCCCAGTCACCTGACCTCCCTGGCACGTCGCTATGGCAACATCTACCGCCTCAAGTGTGGCAACACAACCATGGTGGTATTAAACAGTGGTGACATCATCAGAGAAGCCTTGGTGAAGAAATGGTCGGACTTTGCTGGGAGACCACATTCTTACACCGGAGACGTGGTGTCAGGGGGAGGCCGCTCCATCTCTCTGGGGGACTACAGTGAGGAGTGGAGGGCCCATCGCCGTCTGGCCCATAATGCACTGCAACGCTGCTCCCAGCAGTCGCTCCACGGGGTCATCCAGAAACAGGCCCTCCACCTGAGACAAGTGCTGCTGGACTATAACGGCAGAGCTGCGGATCTCTCTGAGGATTTCACTGTAGCAGCCAGTAACGTCATCACCACACTGGCCTTTGGGAAAGAGTATGAGAAGAGTTCTGCAGAGCTGCAGAGACTGCATGGCTGTCTTAATGAGATCGTGTCTCTATGGGGCTCTCCCTGGATCTCTGCTCTGGACTCCTTCCCACTGCTCAGGAAATTGCCCAATCCTCCGTTCTCCCGTCTTCTGAAAGAGGTGGCCAGGAGAGATGACATCATCAGAACACATCTGGATGAGTATAAgATGCAGGCACCGAGCAAAACATCAGAGGAAGCCATTGCCATCACAAGCGCTCTCCTCAACGGCCTTGGGAAGCCCCAGGACACAACACAGGGAGTGGTCCTGACAGACACTCACGTCCACATGGCCACTGTGGACCTTCTGATCGGGGGAACAGAGACAACAGCTGCCTGGCTCAGCTGGACTGTGGCCTTTCTACTGCACAGGCCTGAGGTACAGTACAGAGTGTATGATGAGTTGTGTTCGGTGCTGGACGGGCGCTACCCTCAGTACAGTGACAGACACAGGCTGccagtgctgtgtgctgtgatcaGTGAGGTGCTCAGACTCAGACCTGTGGCTCCGCTAGCCGTGCCTCACAGAGCCATCAGAGACAGCAGtATTGCAGGCTACTTCATCCCTAAGAACACTGTCATCATCCCCAATTTGTTTGGGGCGCATCATGACCCTGCAGTGTGGACGGATCCCTATGCCTTCAAACCAGAGCGGTTCCTGGAGGGTGGGGGGGCCTCGACGCGTGCTCTCCTGCCTTTCGGCGGGGGCGCTCGGCTGTGTTTGGGGGAGGCCGTGGCCAAAATGGAATTGTTTCTGTTCACCGCCTACTTGTTGCGTGATTTCCAGTTCGTACCTGCTGAAAGCCAGACCTCTCTACCAGACCTGACAGGAGTAGCCAGTGTGGTACTCAAAGCCAAGGCCTACACAGTCATAGCACGGCCCAGACCTGGGCCTTGACCTCTCACAGAGTTTGTTCATGTACAGTGATCACATTACATTTCTATCAATCATTCGGCTCTAGAGGAAGTATTCTTATAAGAGAAGGCATATATTGTGTAGTATTGTGCAGTAATGGTGAAGTAATTGGAATGTATAGAATAATATTTTCTATTTTGTATAAATGCTTCCTCTTTTAACAACGAAGGATGCATTTCTGACTCCCTAAATAGATACACCATAGGTAGCCAGAATAAGAGTGCTGATAGGTTTATTAGAAGAGGGTTGGgctaaaggttaggggttaactCAGGGGTTAAAGGTTACTACTACTCTGGCAGCGCTGTAACAAACGGTTTGGGTTTGCGGAGGATCCTCATCAGGTTCCTGGACATGTAATAAGGCTTCTGCATAGTTCCATCATTCCTCTCTAGATCTTCCACTGTATGAGGGAGAAACACTGGAGtcactctactactctactactctactatacCTTACTATACCTTAATATATTATAccttactatactgtaccttACCATACCTTAATATATTATAccttactatactgtaccttACCATACCTTAATATATTATACCTTA

Function

NR:

description
PREDICTED: steroid 21-hydroxylase isoform X1

GO: NA

KEGG:

id description
K00513 CYP21A; steroid 21-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965749.1 True 2437 mRNA 0.50 12 2950365 2963921

Neighbor

gene id symbol gene type direction distance location
LOC110520727 LOC106606081 coding upstream 6492 2924441 ~ 2943873 (+)
LOC110517892 LOC106606083 coding upstream 66763 2871412 ~ 2883602 (+)
fhod3b fhod3 coding upstream 97026 2606023 ~ 2853339 (+)
LOC118944474 NA coding upstream 531233 2414471 ~ 2419132 (+)
abcb5 LOC106574003 coding upstream 666051 2258551 ~ 2284314 (+)
LOC110506689 LOC106606075 coding downstream 24985 2988906 ~ 2992685 (+)
LOC110506694 aif1 coding downstream 34072 2997993 ~ 3004668 (+)
LOC110506718 LOC102207154 coding downstream 53184 3017105 ~ 3022686 (+)
LOC110518590 LOC106605982 coding downstream 118046 3081967 ~ 3091018 (+)
LOC110506827 LOC106573691 coding downstream 161590 3125511 ~ 3130057 (+)
G216479 NA non-coding upstream 48957 2889057 ~ 2901408 (+)
G216478 NA non-coding upstream 93650 2777367 ~ 2856715 (+)
G216598 NA non-coding upstream 106690 2840038 ~ 2843675 (+)
G216591 NA non-coding upstream 130336 2819626 ~ 2820029 (+)
G216571 NA non-coding upstream 174686 2772480 ~ 2775679 (+)
G216613 NA non-coding downstream 11756 2975677 ~ 2976047 (+)
G216615 NA non-coding downstream 14949 2978870 ~ 2980552 (+)
G216619 NA non-coding downstream 30165 2994086 ~ 2994392 (+)
G216621 LOC106606076 non-coding downstream 31701 2995622 ~ 2996222 (+)
G216622 LOC106606076 non-coding downstream 32306 2996227 ~ 2996567 (+)
G216438 NA other upstream 375466 2572395 ~ 2574899 (+)
G216353 NA other upstream 487621 2461217 ~ 2462744 (+)
ahr1a LOC106605709 other upstream 964569 1960781 ~ 1987480 (+)
G215843 LOC100136727 other upstream 1145110 1804388 ~ 1805255 (+)
G215830 NA other upstream 1203083 1670411 ~ 1747282 (+)
G216640 LOC106606088 other downstream 76065 3039986 ~ 3041517 (+)
G216673 NA other downstream 142433 3106354 ~ 3108233 (+)
G217146 NA other downstream 516395 3480316 ~ 3481536 (+)
LOC110520752 LOC106606080 other downstream 571256 3534519 ~ 3556267 (+)

Expression


Co-expression Network