LOC118964349 (LOC106573444)



Basic Information


Item Value
gene id LOC118964349
gene name LOC106573444
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2963646 ~ 2988272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036975425.1
ATGAAAGGAACCAGTAAAAGGGCGGAAGAGAAGGGCTATGCCGCTCCCTATGATCCATTCTTCAGTGGACCAGTACGAAAGAGGAGCTGCACAGATCTGATCTGCTGCATACTGTTCTTGGCTGTCATAGCTGGTTACATGGTCATGGGAGTTCTGGccTGGTTGTTTGGAGACCCTCGCCATGTTCTCTTCCCCAGGAACTCCACCGGAATGTTCTGTGGCGTGGGGATGAATAGAGACCAGCCCAGGATGATCTATGTGGACATACTGAAGTGTGCCACGACCACCAAGGTGATGGCAGCAGCGCTCGGAGGCACACAGTGTCCCACCACACAGGTGTGTGTCCCTAAGTGTCCGTCTCACTTCTGGATGCTGTCTGCTGCTGCCTATGACCCCGACGCCAATCCCAAAGACTTCTTCCATCAGCAGTACTGTGACCACAGCCTCAACCTGACTACCACCACCTGGACTGTCCAAGAGATCCTTGATGCAGAACTTTGTCCGTCCTTCCTTGTTCCAAGTAAATCAGCTCTGGGGAGGTGTTTGCCCAGTCTACATGCTCTCAAAAGTGCTCCTTCCAACTTCACTCTGCCCGGAATGGCCTCCGTCAACGAGACAGTCAACAGCATCAGAAGCGCCATGGGCTCACTGATATCAGGCTTCAACAGAAAGGCCGTAGGAGTGAGGGTCTTTGAGGACTTTGCCTCCTCCTGGTACTGGATCTTACTTGGTCTGACGCTGGCTCTGCTAGTCAGTGTGGTGTTCCTGTTGCTGCTGAGGTACCTGGCCATTGTCCTGGTCTGGATTCTCATGGTGGGACTTCTGGTGGTGGGAGGCTACGGAATATGGCACTGCTACTCAGAATACTACCATTTCAGCACTTCTAAACTGAAGTTCGGTGATCTAAGCTTCAATACAAATATCTCAGTCTACCTTCAAGTCAAAGAGACCTGGCTTGCTTTCTTGATCATCCTGTGCGTGTGGGAGTCCATTTTGATTCTGGTGCTTAGTTGTCTCAGGAGGAGACTCTCTGTTGCTGTTGCTCTCATGGAGGAGTCCAGCAGGGTGGTGGGTTACCTGATGTCCACCCTGCTCTACCCTCTGTTTACCTTTGTTCTGCTGGTGGTGTGTGTGGCCTACTGGGGAATGACCTCCCTATACTTGGTCACATCAGGGGCCCCTCTCTACAGAGTGGTGTCTCTTAGCGACCCCTCTGTAGATAAGTGTAGTCTCATCAACGGCTCTGAGACCTGCAAGCCACAGACGTTCAACTCCTCGGCCTACCCATACTGCCCGTCGGTGCGCTGCATCTTCTTCAGGTACGATGACACAGGCCTGTTCCAGCAGAACCTGGTTTACCTGCAGGTCTTCAACATCTTTGCCTTCCTGTGGTGTGTGAACTTTGTCATCGCCCTGGGCCAATGTACCCTGGCTGGGACCTTTGCTTCATACTACTGGGCCTTCAGCAAGCCTGCAGAAATCTCACCCTTCGCCCTGTCCCAGTGCTTCATACGCACTCTACAGTACCACGTGGGCTCTCTGGCATTTGGAGCCCTCCTCCTCACCTGCTTCCAGCTAGTCAGGTTGGTGCTGGAGTACCTGAACCATAAGACCAGGGGTTCTCAGAGTGCCTGTGGTCGGTTCCTGTTTAACTGTCTCAGATGCTGCTTCTGGTGTCTGGAATACTTCCTGAAGATCCTCAACAGGAACGCTTATATCATGATCGCCATCTACGGGGAGAGCTTCTGTGTGTCAGCCAAAAATGCATACAGTCTGTTGATGAGGCACATTGGACGGGTGGTGCTActggacagagtgacagacatgCTCATATTCTTTGGCAAACTACTAGTGGTGGCAATAGTTGGTGTGTTggctttcttcttcttctctggacAAATCCGCCTGCCTGGCGACACGTTCCAGGCCGAGATGCTCAACTATTACTGGGTTCCCATCCTGACAGTGATGGCCGGAGCCTACCTCATCGCTCAGGGCTTCTTCAGTGTCTACAGCATGTGTGTTGACACCCTGTTTCTCTGCTTCTTGGAAGATCTAGAGAGGAATGATGGAACTATGCAGAAGCCTTATTACATGTCCAGGAACCTGATGAGGATCCTCCGCAAACCCAAACCGTTTGTTACAGCGCTGCCAGAGTAG

Function


NR:

description
PREDICTED: choline transporter-like protein 4 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036975425.1 True 2160 mRNA 0.52 22 2963646 2988272

Neighbor


gene id symbol gene type direction distance location
c4b c4 coding downstream 47291 2889071 ~ 2916355 (-)
LOC110517891 LOC106606082 coding downstream 94552 2856098 ~ 2869094 (-)
LOC110520772 LOC108270036 coding downstream 358880 2583240 ~ 2604766 (-)
LOC110519055 LOC106606020 coding downstream 382206 2567040 ~ 2581440 (-)
LOC118964348 LOC106605991 coding downstream 410274 2546234 ~ 2553372 (-)
LOC110520729 LOC106606076 coding upstream 3952 2992224 ~ 2997425 (-)
LOC110506699 LOC106606088 coding upstream 34536 3022808 ~ 3058765 (-)
LOC110506785 LOC106593475 coding upstream 70057 3058329 ~ 3076503 (-)
LOC110520730 LOC106573659 coding upstream 103260 3091532 ~ 3098159 (-)
LOC110506763 pon2 coding upstream 110996 3099268 ~ 3123981 (-)
G216893 NA non-coding downstream 2817 2960045 ~ 2960829 (-)
G216892 NA non-coding downstream 4637 2958556 ~ 2959009 (-)
G216877 LOC106606081 non-coding downstream 32283 2929099 ~ 2931363 (-)
G216874 NA non-coding downstream 42532 2918779 ~ 2921114 (-)
G216868 LOC106605921 non-coding downstream 77212 2875190 ~ 2886434 (-)
G216920 aif1 non-coding upstream 9538 2997810 ~ 3004711 (-)
G216925 NA non-coding upstream 23490 3011762 ~ 3012035 (-)
G216911 NA non-coding upstream 31973 3020245 ~ 3021397 (-)
G216934 NA non-coding upstream 76881 3065153 ~ 3065479 (-)
G216938 NA non-coding upstream 85726 3073998 ~ 3074430 (-)
G216811 NA other downstream 225179 2736861 ~ 2738467 (-)
G216059 NA other downstream 838294 2124176 ~ 2125352 (-)
G216066 NA other downstream 841789 2121203 ~ 2121857 (-)
G216038 NA other downstream 905217 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 1011058 1916571 ~ 1953363 (-)
G216902 LOC106606079 other upstream 57733 3046005 ~ 3059744 (-)
G217261 NA other upstream 349914 3338186 ~ 3338580 (-)
G217459 NA other upstream 698130 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1450824 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1550390 4535483 ~ 4553394 (-)

Expression



Co-expression Network