LOC110520729 (LOC106606076)


Basic Information

Item Value
gene id LOC110520729
gene name LOC106606076
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2992224 ~ 2997425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965779.1
caaccactaggctaccgtaTAGATTTAGGTACAAGGAAGGAATGCATATAATTatttttacttaactaggcaagtcagttaagaacaaattcctatttacaatgacggcctacctcggccaaTTGTGtgcagccggatgtgatgcagcctggatttgagccagatactgcagtgatgcctcttgcactgtcttagaccactgcgccactcgggatgtAACATGTAACAGTACGGTTAGGCTAAGTATTGTAGAACTAATTGGATAAATGTGAAAATtacagggctcctgagtggcgcagggtctaaggcattgcatctcagtgaatgaggcgtcactacagtccctggttcgaatccaggttgtatcacatctGGCAGTGATTGtgagtccgtcattgtaaataagaatttgttcttaactggcttgtctgtttaaatatatgtatattattttaAGCAAATAACTTGTTCTCAGTCCTTGACACTAGATGGCACTGTTAAGCATATCATCTTCAAAACAACATTCTTTTTATGTGAGAAGTCAATAAATGTTTCCCCGCAAATGTGTATTCATGACCCATATAGAAACTAGGCCTTGGAGAACTGAGATTGGACTCTGAGATGAGAGACTAACTTGATAAGGAACTTCACACTCTCACATGGATAATGGCACTGTTTCAGTCACACGGGTTATCAATACTTCTGTTGATCATCAGAACACAGTTTGCTGGTGCTGAGTCTTGTTCTCATGTAGATGCGCCACAATTCATCACAGCTACTCAGGAAGAGGTagctgtcctcccctgtttcacATCAATCCACAAAGCAACCAGAGTGAAATGGACAAAACTTTCACCTAAACCTGAGGACATCTTGGTGTGGCCTGATAATCCATCTGTGGCCCATAAATCAGAACGTGTGGCTTTCGAGTCGGGAGCGGATGTTGTGGTGGCTGGAAACCTGTCCCTGTCTCTAAGAGATGTAAGGAAATCTGACGAAGGGCTTTATAGTTGCAATGTCTGGTTGGGATGGAGTTGTGTTCATGTGAAAAACATCACTCTAAAAGTGAAAGATATCTCCAACCAAACATTCCTAGGAAAAAGGGTGAGCTTTGGAGGGAATCTCAGTTCAGGAGATGCATCTTTGGCTCTCTCCATGGTGGAGTACAGTCACAGCCAATGGTACAGATGTAGGTTGCAGATGGGACAAAATGAACGCTGCTTTGAGGTCAAGCTGCAGGTTAAAGAACAGGAGGAGAACCTGGTTGTTCGGACTTTCACCACAACTGAGCTAACAGACCCTGCAGTTACCTCCAGGGGGAGTCCAGAAAGAGTTGCGACGGCTACAGTTGGAACGGCTACTATAGTGGCTTCATCCATGTGTGTGATTGTCATAATGGCTCTTACGCTGGGATTGATCATTTGCCTCAGGCGCCGCAGACACTCAGatggAGATGAGTCTGACTGGAATGCTTATGAAGATGTACAAGACCCAGCAACGGGACCCAATTGTCTGTATTCACTTGCAGATTTTGACCAGAAGGACAACCTACACACTTttcaATGCCAGTGAAAAGAATAATCATCTTTCAATCAACACACCATGTCTTACCGAACCCTTCACAAAACATCTGTAAATGCTTTTTTATGATATTCACCCACTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACACTCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACACTCTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACAATCTTATCTTTCAACCCCTGGTATAGC
>XM_036965771.1
tccaaccactaggctaccgtaTAGATTTAGGTACAAGGAAGGAATGCATATAATTatttttacttaactaggcaagtcagttaagaacaaattcctatttacaatgacggcctacctcggccaaTTGTGtgcagccggatgtgatgcagcctggatttgagccagatactgcagtgatgcctcttgcactgtcttagaccactgcgccactcgggatgtAACATGTAACAGTACGGTTAGGCTAAGTATTGTAGAACTAATTGGATAAATGTGAAAATtacagggctcctgagtggcgcagggtctaaggcattgcatctcagtgaatgaggcgtcactacagtccctggttcgaatccaggttgtatcacatctGGCAGTGATTGtgagtccgtcattgtaaataagaatttgttcttaactggcttgtctgtttaaatatatgtatattattttaAGCAAATAACTTGTTCTCAGTCCTTGACACTAGATGGCACTGTTAAGCATATCATCTTCAAAACAACATTCTTTTTATGTGAGAAGTCAATAAATGTTTCCCCGCAAATGTGTATTCATGACCCATATAGAAACTAGGCCTTGGAGAACTGAGATTGGACTCTGAGATGAGAGACTAACTTGATAAGGAACTTCACACTCTCACATGGATAATGGCACTGTTTCAGTCACACGGGTTATCAATACTTCTGTTGATCATCAGAACACAGTTTGCTGGTGCTGAGTCTTGTTCTCATGTAGATGCGCCACAATTCATCACAGCTACTCAGGAAGAGGTagctgtcctcccctgtttcacATCAATCCACAAAGCAACCAGAGTGAAATGGACAAAACTTTCACCTAAACCTGAGGACATCTTGGTGTGGCCTGATAATCCATCTGTGGCCCATAAATCAGAACGTGTGGCTTTCGAGTCGGGAGCGGATGTTGTGGTGGCTGGAAACCTGTCCCTGTCTCTAAGAGATGTAAGGAAATCTGACGAAGGGCTTTATAGTTGCAATGTCTGGTTGGGATGGAGTTGTGTTCATGTGAAAAACATCACTCTAAAAGTGAAAGaATGCAAAATTCTACATTCAGTTATGGCAGCACCCAACGGGATAGCTACCCTGCCTTGCCTGTTGAACATGACAACAGGAAATACTCAAATATCATCAGTGGCCTGGGCAGAGATCAAGGGAGACAGTGAGATCCAAATACTTCAATACCCTACAGATATCTCCAACCAAACATTCCTAGGAAAAAGGGTGAGCTTTGGAGGGAATCTCAGTTCAGGAGATGCATCTTTGGCTCTCTCCATGGTGGAGTACAGTCACAGCCAATGGTACAGATGTAGGTTGCAGATGGGACAAAATGAACGCTGCTTTGAGGTCAAGCTGCAGGTTAAAGAACAGGAGGAGAACCTGGTTGTTCGGACTTTCACCACAACTGAGCTAACAGACCCTGCAGTTACCTCCAGGGGGAGTCCAGAAAGAGTTGCGACGGCTACAGTTGGAACGGCTACTATAGTGGCTTCATCCATGTGTGTGATTGTCATAATGGCTCTTACGCTGGGATTGATCATTTGCCTCAGGCGCCGCAGACACTCAGatggAGATGAGTCTGACTGGAATGCTTATGAAGATGTACAAGACCCAGCAACGGGACCCAATTGTCTGTATTCACTTGCAGATTTTGACCAGAAGGACAACCTACACACTTttcaATGCCAGTGAAAAGAATAATCATCTTTCAATCAACACACCATGTCTTACCGAACCCTTCACAAAACATCTGTAAATGCTTTTTTATGATATTCACCCACTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACACTCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACACTCTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACAATCTTATCTTTCAACCCCTGGTATAGC
>XM_036965775.1
agtccaaccactaggctaccgtaTAGATTTAGGTACAAGGAAGGAATGCATATAATTatttttacttaactaggcaagtcagttaagaacaaattcctatttacaatgacggcctacctcggccaaTTGTGtgcagccggatgtgatgcagcctggatttgagccagatactgcagtgatgcctcttgcactgtcttagaccactgcgccactcgggatgtAACATGTAACAGTACGGTTAGGCTAAGTATTGTAGAACTAATTGGATAAATGTGAAAATtacagggctcctgagtggcgcagggtctaaggcattgcatctcagtgaatgaggcgtcactacagtccctggttcgaatccaggttgtatcacatctGGCAGTGATTGtgagtccgtcattgtaaataagaatttgttcttaactggcttgtctgtttaaatatatgtatattattttaAGCAAATAACTTGTTCTCAGTCCTTGACACTAGATGGCACTGTTAAGCATATCATCTTCAAAACAACATTCTTTTTATGTGAGAAGTCAATAAATGTTTCCCCGCAAATGTGTATTCATGACCCATATAGAAACTAGGCCTTGGAGAACTGAGATTGGACTCTGAGATGAGAGACTAACTTGATAAGGAACTTCACACTCTCACATGGATAATGGCACTGTTTCAGTCACACGGGTTATCAATACTTCTGTTGATCATCAGAACACAGTTTGCTGGTGCTGAGTCTTGTTCTCATGTAGATGCGCCACAATTCATCACAGCTACTCAGGAAGAGGTagctgtcctcccctgtttcacATCAATCCACAAAGCAACCAGAGTGAAATGGACAAAACTTTCACCTAAACCTGAGGACATCTTGGTGTGGCCTGATAATCCATCTGTGGCCCATAAATCAGAACGTGTGGCTTTCGAGTCGGGAGCGGATGTTGTGGTGGCTGGAAACCTGTCCCTGTCTCTAAGAGATGTAAGGAAATCTGACGAAGGGCTTTATAGTTGCAATGTCTGGTTGGGATGGAGTTGTGTTCATGTGAAAAACATCACTCTAAAAGTGAAAGaATGCAAAATTCTACATTCAGTTATGGCAGCACCCAACGGGATAGCTACCCTGCCTTGCCTGTTGAACATGACAACAGGAAATACTCAAATATCATCAGTGGCCTGGGCAGAGATCAAGGGAGACAGTGAGATCCAAATACTTCAATACCCTACAGATATCTCCAACCAAACATTCCTAGGAAAAAGGGTGAGCTTTGGAGGGAATCTCAGTTCAGGAGATGCATCTTTGGCTCTCTCCATGGTGGAGTACAGTCACAGCCAATGGTACAGATGTAGGTTGCAGATGGGACAAAATGAACGCTGCTTTGAGGTCAAGCTGCAGGTTAAAGAACAGGAGGAGAACCTGGTTGTTCGGACTTTCACCACAACTGAGCTAACAGACCCTGTTACCTCCAGGGGGAGTCCAGAAAGAGTTGCGACGGCTACAGTTGGAACGGCTACTATAGTGGCTTCATCCATGTGTGTGATTGTCATAATGGCTCTTACGCTGGGATTGATCATTTGCCTCAGGCGCCGCAGACACTCAGatggAGATGAGTCTGACTGGAATGCTTATGAAGATGTACAAGACCCAGCAACGGGACCCAATTGTCTGTATTCACTTGCAGATTTTGACCAGAAGGACAACCTACACACTTttcaATGCCAGTGAAAAGAATAATCATCTTTCAATCAACACACCATGTCTTACCGAACCCTTCACAAAACATCTGTAAATGCTTTTTTATGATATTCACCCACTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACACTCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACACTCTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACAATCTTATCTTTCAACCCCTGGTATAGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106606076 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965779.1 False 1985 mRNA 0.42 8 2992224 2997421
XM_036965771.1 False 2143 mRNA 0.43 8 2992224 2997423
XM_036965775.1 True 2142 mRNA 0.43 8 2992224 2997425

Neighbor

gene id symbol gene type direction distance location
LOC118964349 LOC106573444 coding downstream 3952 2963646 ~ 2988272 (-)
c4b c4 coding downstream 75869 2889071 ~ 2916355 (-)
LOC110517891 LOC106606082 coding downstream 123130 2856098 ~ 2869094 (-)
LOC110520772 LOC108270036 coding downstream 387458 2583240 ~ 2604766 (-)
LOC110519055 LOC106606020 coding downstream 410784 2567040 ~ 2581440 (-)
LOC110506699 LOC106606088 coding upstream 25383 3022808 ~ 3058765 (-)
LOC110506785 LOC106593475 coding upstream 60904 3058329 ~ 3076503 (-)
LOC110520730 LOC106573659 coding upstream 94107 3091532 ~ 3098159 (-)
LOC110506763 pon2 coding upstream 101843 3099268 ~ 3123981 (-)
LOC118936609 LOC106605979 coding upstream 109146 3106571 ~ 3120111 (-)
G216871 NA non-coding downstream 10441 2907312 ~ 2981783 (-)
G216893 NA non-coding downstream 31395 2960045 ~ 2960829 (-)
G216892 NA non-coding downstream 33215 2958556 ~ 2959009 (-)
G216877 LOC106606081 non-coding downstream 60861 2929099 ~ 2931363 (-)
G216874 NA non-coding downstream 71110 2918779 ~ 2921114 (-)
G216920 aif1 non-coding upstream 385 2997810 ~ 3004711 (-)
G216925 NA non-coding upstream 14337 3011762 ~ 3012035 (-)
G216911 NA non-coding upstream 22820 3020245 ~ 3021397 (-)
G216934 NA non-coding upstream 67728 3065153 ~ 3065479 (-)
G216938 NA non-coding upstream 76573 3073998 ~ 3074430 (-)
G216811 NA other downstream 253757 2736861 ~ 2738467 (-)
G216059 NA other downstream 866872 2124176 ~ 2125352 (-)
G216066 NA other downstream 870367 2121203 ~ 2121857 (-)
G216038 NA other downstream 933795 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 1039636 1916571 ~ 1953363 (-)
G216902 LOC106606079 other upstream 48580 3046005 ~ 3059744 (-)
G217261 NA other upstream 340761 3338186 ~ 3338580 (-)
G217459 NA other upstream 688977 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1441671 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1541237 4535483 ~ 4553394 (-)

Expression


Co-expression Network