LOC110506718 (LOC102207154)


Basic Information

Item Value
gene id LOC110506718
gene name LOC102207154
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3017105 ~ 3022686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965787.1
ttgatttgatttgaggtccGAGAAGCCGAAGATTCCACCGGAAGTAGTATTCTTGTTTACAGCAGTTAGCTAAAgtgttagctagttagcaaagTAGCTACCGGTAGATATATCTAGCTAACATAAAAGAGGAAGATGAGCAGCTCGGAGGAGGTGTCATGGATCTCCTGGTTCTGTGGCCTGAGGGGGAATGAGTTTTTCTGTGAGGTTGATGAGGACTACATTCAGGACAAGTTTAACCTGACAGGGCTCAATGAGCAGGTGCCTCACTACCGCCAGGCCCTTGACATGATCCTGGACCTGGAGCCAGatgaGGAGTTGGAAGACAACCCCAACCAGAGTGACCTGATAGAGCAGGCTGCAGAGATGCTGTACGGGCTGATCCACGCACGCTACATCCTCACCAACAGAGGCATCGCTCAGATGCTGGATAAGTACCAACAAGGGGACTTTGGCTATTGCCCAAGAGTGTACTGTGAGAATCAACCCATGCTTCCTATTGGTCTGTCAGACATCCCAGGTGAGGCAATGGTGAAGCTGTATTGTCCAAAGTGCATGGATGTGTACACCCCCAAGTCCTCTCGGCACCACCACACGGACGGGGCCTACTTCGGGACAGGCTTCCCCCACATGCTATTTATGGTGCACCCAGAGTACCGGCCAAAACGACCTGCCAACCAGTTTGTGCCAAGGCTATATGGCTTCAAGATCCACCCCATGGCTTATCAACTCCAACTCCAGGCTGCCTCCAGCTTCAAGAGTCCTGTGAAGGCTATTCGCTAGAACTTACACACCCGGCTGGGAAAGAGACATTTTGACTTGGTTGGAATGAAAGCAGTGGATTATGTAGCTCAATAAAGGCTTGTTAAAAACACATTATGACAGATACAATACATACATGTAGATCAGGGATGGGAAACTACAGTCATCTTGGGTCGCAGTATTACCCCATTCATAGCAAACACAGCTGACACATTGTATTCTAAACTGAGGATCATGCTTAGTtaattattggagtcaggtgtgttagctgcaGCAAAAATATcacaccaatcaggccccagaaGGACTGGAGTTGACCATCCCTGATGTAGTTAGATGTCAACGTCCGGACCAGGCCATCATCTGTTACACAGGATGCTCTTTGGTGATTGGCTCCCTCTGTGCTTTAGCCTATCATAACCCTACTGACTACAATCGTGCAACTCTTCCCCTCTCCTTGACAGGACCCAATCTTTCAAACCTTTTTTCAGTTTGGCTCGCTAAGGCAGGGTTTTCCAAACTCAGTCCTGAGGCCCCCCCCAGGTGCACCTTTTGTTTTttgcccaattctgatcttttgcccacgTATTGTCAAAagagctgatgtgattggtcagagTTGGGCAGCCTGTGTGAGCACATCCCAATACCTGTTTTCACACTATCATGCTGACCTGCAAAGTATTGGGCTGGCTCAGATACATTCTCTACATGGTTTCCTTTCCCGCATGGTTCCATTACCGAGGGTGGACACGTAACTTAGCAGTGTGAAAAGGCTGATATAAAACGATCTTCAATGATTGTTCATATCCAGATGATTGGCTGAGAATCCAATTAACAACCAGTTTGATATGTATGATAGATTCCCTAGAGAATGGATGCTGCACAAATTGAATTTAAGACGGAGTTTATTAGATGTATAAGATGTGTTCTCAGGGTGAAGGGCAACATGGGTTTGCTTTGTGCTGACATAAAACACCAGTGCTGGAACACTCACTGTCCCAAAGTGAAAATGTTCGGGCCACTTAAGCCATCATTAGTTGTGAACATGTCCATGACAGAGCAGAGTTGTCTCTTGACTGGACATTGAGACACATGGTTTCTcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcacggtttctcttgactggacactgagacgcacggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcaTGGTTTCTCTTGACTGGACACAGA
>XM_036965789.1
GATTCCACCGGAAGTAGTATTCTTGTTTACAGCAGTTAGCTAAAgtgttagctagttagcaaagTAGCTACCGGTAGATATATCTAGCTAACATAAAAGAGGATGAGCAGCTCGGAGGAGGTGTCATGGATCTCCTGGTTCTGTGGCCTGAGGGGGAATGAGTTTTTCTGTGAGGTTGATGAGGACTACATTCAGGACAAGTTTAACCTGACAGGGCTCAATGAGCAGGTGCCTCACTACCGCCAGGCCCTTGACATGATCCTGGACCTGGAGCCAGatgaGGAGTTGGAAGACAACCCCAACCAGAGTGACCTGATAGAGCAGGCTGCAGAGATGCTGTACGGGCTGATCCACGCACGCTACATCCTCACCAACAGAGGCATCGCTCAGATGCTGGATAAGTACCAACAAGGGGACTTTGGCTATTGCCCAAGAGTGTACTGTGAGAATCAACCCATGCTTCCTATTGGTCTGTCAGACATCCCAGGTGAGGCAATGGTGAAGCTGTATTGTCCAAAGTGCATGGATGTGTACACCCCCAAGTCCTCTCGGCACCACCACACGGACGGGGCCTACTTCGGGACAGGCTTCCCCCACATGCTATTTATGGTGCACCCAGAGTACCGGCCAAAACGACCTGCCAACCAGTTTGTGCCAAGGCTATATGGCTTCAAGATCCACCCCATGGCTTATCAACTCCAACTCCAGGCTGCCTCCAGCTTCAAGAGTCCTGTGAAGGCTATTCGCTAGAACTTACACACCCGGCTGGGAAAGAGACATTTTGACTTGGTTGGAATGAAAGCAGTGGATTATGTAGCTCAATAAAGGCTTGTTAAAAACACATTATGACAGATACAATACATACATGTAGATCAGGGATGGGAAACTACAGTCATCTTGGGTCGCAGTATTACCCCATTCATAGCAAACACAGCTGACACATTGTATTCTAAACTGAGGATCATGCTTAGTtaattattggagtcaggtgtgttagctgcaGCAAAAATATcacaccaatcaggccccagaaGGACTGGAGTTGACCATCCCTGATGTAGTTAGATGTCAACGTCCGGACCAGGCCATCATCTGTTACACAGGATGCTCTTTGGTGATTGGCTCCCTCTGTGCTTTAGCCTATCATAACCCTACTGACTACAATCGTGCAACTCTTCCCCTCTCCTTGACAGGACCCAATCTTTCAAACCTTTTTTCAGTTTGGCTCGCTAAGGCAGGGTTTTCCAAACTCAGTCCTGAGGCCCCCCCCAGGTGCACCTTTTGTTTTttgcccaattctgatcttttgcccacgTATTGTCAAAagagctgatgtgattggtcagagTTGGGCAGCCTGTGTGAGCACATCCCAATACCTGTTTTCACACTATCATGCTGACCTGCAAAGTATTGGGCTGGCTCAGATACATTCTCTACATGGTTTCCTTTCCCGCATGGTTCCATTACCGAGGGTGGACACGTAACTTAGCAGTGTGAAAAGGCTGATATAAAACGATCTTCAATGATTGTTCATATCCAGATGATTGGCTGAGAATCCAATTAACAACCAGTTTGATATGTATGATAGATTCCCTAGAGAATGGATGCTGCACAAATTGAATTTAAGACGGAGTTTATTAGATGTATAAGATGTGTTCTCAGGGTGAAGGGCAACATGGGTTTGCTTTGTGCTGACATAAAACACCAGTGCTGGAACACTCACTGTCCCAAAGTGAAAATGTTCGGGCCACTTAAGCCATCATTAGTTGTGAACATGTCCATGACAGAGCAGAGTTGTCTCTTGACTGGACATTGAGACACATGGTTTCTcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcacggtttctcttgactggacactgagacgcacggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcaTGGTTTCTCTTGACTGGACACAGA
>TU246778
CAGCAGTTAGCTAAAgtgttagctagttagcaaagTAGCTACCGGTAGATATATCTAGCTAACATAAAAGAGGAAGATGAGCAGCTCGGAGGAGGTGTCATGGATCTCCTGGTTCTGTGGCCTGAGGGGGAATGAGTTTTTCTGTGAGGTTGATGAGGACTACATTCAGGACAAGTTTAACCTGACAGGGCTCAATGAGCAGGTGCCTCACTACCGCCAGGCCCTTGACATGATCCTGGACCTGGAGCCAGatgaGGAGTTGGAAGACAACCCCAACCAGAGTGACCTGATAGAGCAGGCTGCAGAGATGCTGTACGGGCTGATCCACGCACGCTACATCCTCACCAACAGAGGCATCGCTCAGATGCTGGATAAGTACCAACAAGGGGACTTTGGCTATTGCCCAAGAGTGTACTGTGAGAATCAACCCATGCTTCCTATTGGTCTGTCAGACATCCCAGGTGAGGC
>TU246782
CACCACCACACGGACGGGGCCTACTTCGGGACAGGCTTCCCCCACATGCTATTTATGGTGCACCCAGAGTACCGGCCAAAACGACCTGCCAACCAGTTTGTGCCAAGGCTATATGGCTTCAAGATCCACCCCATGGCTTATCAACTCCAACTCCAGGCTGCCTCCAGCTTCAAGAGTCCTGTGAAGGCTATTCGCTAGAACTTACACACCCGGCTGGGAAAGAGACATTTTGACTTGGTTGGAATGAAAGCAGTGGATTATGTAGCTCAATAAAGGCTTGTTAAAAACACATTATGACAGAT
>TU246772
TTAACAACCAGTTTGATATGTATGATAGATTCCCTAGAGAATGGATGCTGCACAAATTGAATTTAAGACGGAGTTTATTAGATGTATAAGATGTGTTCTCAGGGTGAAGGGCAACATGGGTTTGCTTTGTGCTGACATAAAACACCAGTGCTGGAACACTCACTGTCCCAAAGTGAAAATGTTCGGGCCACTTAAGCCATCATTAGTTGTGAACATGTCCATGACAGAGCAGAGTTGTCTCTTGACTGGACactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacacatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacacatgGTTTCTCTTGACTGGACACAGACGCATGGTTTCTcttgactggacactgagacacatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacacatggtttctcttgactggacactgagacgcatggtttctcttgactggacactgagacacatggtttctcttgactggacactgagacgcaTTGGTCTGTTACAATATGAAGTGGTATTGAACACACAGGTGGATGTCTTTCATGTTGATAACCTATAGCTACAACCAGTTTACATTATGGTACTACATTTTAcattaaatatgtttttctttCAGTCTACAATTCCAGTGGTAATGCTATTATTGATTTTCTGAAGTCTGTATGCAAGC

Function

NR:

description
PREDICTED: keratin-associated protein 5-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965787.1 False 2122 mRNA 0.47 7 3017105 3021667
XM_036965789.1 False 2089 mRNA 0.47 7 3017135 3021667
TU246778 False 468 TUCP 0.48 6 3017164 3019834
TU246782 False 302 lncRNA 0.53 2 3019893 3020432
TU246772 True 829 lncRNA 0.43 2 3021142 3022686

Neighbor

gene id symbol gene type direction distance location
LOC110506694 aif1 coding upstream 12437 2997993 ~ 3004668 (+)
LOC110506689 LOC106606075 coding upstream 24420 2988906 ~ 2992685 (+)
LOC110520728 LOC106606086 coding upstream 53184 2950365 ~ 2963921 (+)
LOC110520727 LOC106606081 coding upstream 73232 2924441 ~ 2943873 (+)
LOC110517892 LOC106606083 coding upstream 133503 2871412 ~ 2883602 (+)
LOC110518590 LOC106605982 coding downstream 60300 3081967 ~ 3091018 (+)
LOC110506827 LOC106573691 coding downstream 103844 3125511 ~ 3130057 (+)
LOC110506857 mroh1 coding downstream 180757 3202424 ~ 3242211 (+)
LOC110506902 LOC106573706 coding downstream 288847 3310514 ~ 3313472 (+)
LOC110520733 LOC106605973 coding downstream 437465 3459132 ~ 3491968 (+)
G216622 LOC106606076 non-coding upstream 20538 2996227 ~ 2996567 (+)
G216621 LOC106606076 non-coding upstream 20883 2995622 ~ 2996222 (+)
G216619 NA non-coding upstream 22713 2994086 ~ 2994392 (+)
G216615 NA non-coding upstream 36553 2978870 ~ 2980552 (+)
G216613 NA non-coding upstream 41058 2975677 ~ 2976047 (+)
G216644 NA non-coding downstream 16043 3037710 ~ 3039784 (+)
G216642 LOC106606079 non-coding downstream 20000 3041667 ~ 3044041 (+)
G216653 NA non-coding downstream 27626 3049293 ~ 3053091 (+)
G216634 NA non-coding downstream 36887 3058554 ~ 3059729 (+)
G216664 NA non-coding downstream 50231 3071898 ~ 3072181 (+)
G216438 NA other upstream 442206 2572395 ~ 2574899 (+)
G216353 NA other upstream 554361 2461217 ~ 2462744 (+)
ahr1a LOC106605709 other upstream 1031309 1960781 ~ 1987480 (+)
G215843 LOC100136727 other upstream 1211850 1804388 ~ 1805255 (+)
G215830 NA other upstream 1269823 1670411 ~ 1747282 (+)
G216640 LOC106606088 other downstream 18319 3039986 ~ 3041517 (+)
G216673 NA other downstream 84687 3106354 ~ 3108233 (+)
G217146 NA other downstream 458649 3480316 ~ 3481536 (+)
LOC110520752 LOC106606080 other downstream 513510 3534519 ~ 3556267 (+)
LOC110507370 LOC106606027 other downstream 704863 3725954 ~ 3733696 (+)
LOC110506718 LOC102207154 other upstream 59 3017105 ~ 3022686 (+)
G216602 NA non-coding upstream 35492 2907084 ~ 2981672 (+)

Expression


Co-expression Network