LOC110506785 (LOC106593475)


Basic Information

Item Value
gene id LOC110506785
gene name LOC106593475
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3058329 ~ 3076503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586648.2
TGCACAGGGAATAGGGAGCTATAATATATATTTCAGCCCTTCCTGATCTATTTTACTGATGCTATTCCTTTCTTTCACTCGTCTGGACTGGATCCCTGTACCTCGTCCTGTCTGGGATGTCTCCTGTGTTTCCATGCTGATGTTTGTGTGTACCATGACAACAGAGGCTAGCGCGGTGGGCGAGGCGGACACAGAGGGCAAGCCGAAGCCCAGTGtagcagaggcagagagaagaccGGAGAACAAGCAGAGCTCGGAGGCAGAGATACAACTGGAGAACAAGCAGAGCCCAGAtccagaaacagagagagaaccgGAGAACAAGCCGAGCCCAGAgccagaaacagagagagaaccgGAGAACAAGCCGAGCCCAGAGGCAGCAGCACCGgagccagagagggagaagcCCAGCCAGAAGACCCAGGAGCAGGACTCAGAGCCTGGCTCCACAGAGAGCCCCATCTTCACCACCACCACTGAGGAGGAGCAGCTAGTGAAGCCCCGCCAGCGCACCTCAGCCAGCCGCGGCCTCTCacgcctcttctcctccttcctcaaACGGCGCTCGCAGTGCTCAGACGTAGAGTGGGCTGAGGtcgagaaggcagagaaggacaGGAAAGAGAAGGCAGAGGCTGGAACAAAGGAGGAAAAGTTAGAGCAGGCCaagggggaggagaagaaagaggcagaggaaaggggggagaagaaagaggaggaagaagcaGCAAAGAAAGCAGAGAAGAAAGAGGAAGAAGCAGCAAAGAaagcagagaagaagaaagaggaggaagaagaagcagCAAAGAaagcagagaagaagaaagaggaggaagaagaagcagCAAAGAaagcagagaagaagaaagaggaggaagaagcaGCAAAGAAAGCAAAGAAGAAAGAGGAAGAAGCAGCAAAGAaagcagagaagaagaaagaggaggaagaagcaGCAAAGaaagcagagaagaagaagaagaaagaaggggAAGAAGCAGCAAAGAAAGAGGCaGggaagaagaaagagaaagaaaataaagaggaggagaaggggaagaagAACGAGGCGAATAAAGAGGTAAAGAAGAACGAGGAGAATAAAGAGTTAAAGAAGAAAAAACGGAAGGGCAAAAAGAAAGCAGGGGAGGAGCACAAAGCAGGGGAGCAGTCCACAACAGAGGTGCAGGTGAAAGCCCCCATCGCGGCCCCGGAGCCAGAGCTCAGAGCAGAGGCGGAGGGGGAGGCTGAacaggagaggcaggaggagccGGTAGAGGACCAGGACCATCACTCCATCAGCAGTGCAGAGACACAGGTGagtgagggagacagacacagtgaacTTCTCACCTAG

Function

NR:

description
vicilin-like seed storage protein At2g18540, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586648.2 True 1360 mRNA 0.53 3 3058329 3076503

Neighbor

gene id symbol gene type direction distance location
LOC110520729 LOC106606076 coding downstream 60904 2992224 ~ 2997425 (-)
LOC118964349 LOC106573444 coding downstream 70057 2963646 ~ 2988272 (-)
c4b c4 coding downstream 141974 2889071 ~ 2916355 (-)
LOC110517891 LOC106606082 coding downstream 189235 2856098 ~ 2869094 (-)
LOC110520772 LOC108270036 coding downstream 453563 2583240 ~ 2604766 (-)
LOC110520730 LOC106573659 coding upstream 15029 3091532 ~ 3098159 (-)
LOC110506763 pon2 coding upstream 22765 3099268 ~ 3123981 (-)
LOC118936609 LOC106605979 coding upstream 30068 3106571 ~ 3120111 (-)
LOC110506836 LOC106605978 coding upstream 75506 3152009 ~ 3162923 (-)
LOC118944808 NA coding upstream 160972 3237475 ~ 3238019 (-)
G216911 NA non-coding downstream 36932 3020245 ~ 3021397 (-)
G216925 NA non-coding downstream 46294 3011762 ~ 3012035 (-)
G216920 aif1 non-coding downstream 53618 2997810 ~ 3004711 (-)
G216893 NA non-coding downstream 97500 2960045 ~ 2960829 (-)
G216892 NA non-coding downstream 99320 2958556 ~ 2959009 (-)
G216942 NA non-coding upstream 5389 3081892 ~ 3082106 (-)
G216944 NA non-coding upstream 9675 3086178 ~ 3086802 (-)
G216945 NA non-coding upstream 11305 3087808 ~ 3088229 (-)
G216946 NA non-coding upstream 11806 3088309 ~ 3088542 (-)
G216811 NA other downstream 319862 2736861 ~ 2738467 (-)
G216059 NA other downstream 932977 2124176 ~ 2125352 (-)
G216066 NA other downstream 936472 2121203 ~ 2121857 (-)
G216038 NA other downstream 999900 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 1105741 1916571 ~ 1953363 (-)
G217261 NA other upstream 261683 3338186 ~ 3338580 (-)
G217459 NA other upstream 609899 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1362593 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1462159 4535483 ~ 4553394 (-)
LOC118944839 LOC106573494 other upstream 1567467 4634932 ~ 4648920 (-)

Expression


Co-expression Network