LOC118936609 (LOC106605979)


Basic Information

Item Value
gene id LOC118936609
gene name LOC106605979
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3106571 ~ 3120111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965874.1
GGTTTTCAGAGAAGTACAGCCTCGTGTTTTCTCTCTCCCATTTTCCACACAAAGAAAGCACAGCGCCCCTCGTAGGAATGGAGGTGCACATTGCCGCTAAACCAAGCATCGCCATATTGATGTCCCAACAACGTCGAGAGGGCATATGACAGTGGGAATCCTAGTGATGACTCTACTGAGCCCGGTGCCCCCTGATTAGACTGGTTGGATGTCCTCCTTAACAACTACAACAATCAGCCTCTACCAAACCAACGTAGCATCAGCTCTGCAGCGACCCCACCTGTCACCTGCAGCTTGGAGGAAACCTCCAAGGTGATCCAGAGAACATCCTGTGTATAATATGTCCGGCTCTGTCCCAAGCCGCTCTCGAGTTTACCCTGATGTAAACACACAGAGGCCTCGGGAGTACTGGGACTACGAGTCCCATGTGGTGGAATGGGGGAACCAAGATGACTACCAGCTGGTGCGCAAACTAGGACGAGGCAAATACAGTGAGGTGTTTGAAGCCATAAATATCACCAACAATGAGAAGGTTGTTGTCAAAATACTCAAGCCAGTCAAAAAGAAGAAAATCAAGAGAGAAATCAAGATTCTAGAAAACTTGCGAGGCGGTCCCAACATCATCTCACTTTTAGATATCGTCAAGGATCCTGTGTCTCGAACTCCCGCGCTGGTTTTTGAGCATGTCAACAACACTGATTTCAAGCAACTGTATCAAACTTTATCAGACTTCGACATACGGTTCTACATGTTTGAAATCTTGAAGGCCCTTGACTACTGTCACAGTATGGGGATCATGCACAGAGATGTCAAGCCACACAATGTGATGATTGATCATGAACACAGAAAGCTCCGCCTGATCGACTGGGGCTTGGCAGAGTTCTACCACCCTAACCAGGAGTACAATGTGAGAGTGGCCTCGCGCTACTTCAAAGGACCTGAGCTGCTCGTAGACTACCAGATGTATGACTACAGTTTAGACATGTGGAGTTTGGGCTGTATGTTGGCCAGCATGATCTTCAGGAAGGAGCCTTTCTTCCATGGACACGACAACTACGACCAGCTCGTACGGATTGCTAAAGTCCTCGGCACAGAGGACTTGTATGACTACATCGACAAGTACAACATTGAACTAGACCCGCGGTTTAATGACATTCTGGGCAGACACTCCCGTAAGAGGTGGGAGAGGTTTGTGCACAGTGAGAACCAGCACCTGGTGAGCACCGAGGCTCTGGACTTCCTGGACAAGTTGCTGCGTTACGACCACAACGCTCGCCTCACGGCCCGGGAGGCCATGGAACATCCATACTTCTACTCCGTTGTTAAAGATCAGGGAAGGGGCAGCACTCCTGGAGGAATAGTTACCAGCTCCACTCCAGTCAGCTCTTCCAGTATGATGGCAGGTATCACCTCCACAAAGGCACTGGCTAACAACGCTGGATCACCTGTCATTTCTGCCCCCAACACTCTGGCCCCACAAGTCCCAGCGGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagTGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCTGGGGCACAGACCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCTGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGGCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCCGGGGCACAGCCCTGaaacctccaccacctcctcccagcGGCTGCCGGGGCACAGCCCTGAAACCTCCTCCCAGCGGCTGCCGGGGCACAGCCCTGaaacctccaccccctcctcccagcGGCTGCCGGGGCACAGCCCTGAAACCACCACCTCCTCATGGGACCTCCTCACCTATGTTTGTGTGGGCCCGTGGGTCGGTTCAGCCCACCCCACCCTCTACTATGTGTTGGCCTGGCCAGTGGGTTTCCTTTTTATTACGTTGAGAAGAATGACAGAGAAAAGATGTTGAAATTGCTTTTTCCTGTTCAGTTATATTTTGAGATCTGGACTTGACATcatgttttatttgtcacacctGTCTGGATGATTTGGTCTAGGAATTCTAATACAATGTAGacatgatgaagaagaagaagagaatggataataacatttattttgtatGTCCCAAATATACAGTCTAGCTTGAAACAGTTTGTTTGGGGATTCCTGCTGTTGCAATACACTGAACCTGTAGACAACTTCACAAAACGAGACAGGATTCTCTGATGTAGCCCCCACTTGGCAGTGCTGGATAGTTGCTCACACACTACTGTTAAGTGCAGGAGTTACCGGTGTTTGGAAGTTGTTAGAAGCTATCGTACTTGGATTGGACATCTGTAGATACTCTACAGTAACTGTTAGGTTGCATGCACCAAATGCTGACTATCACAGGGTCAATAGTTTGCCAATTTGGTGTTACTTTTACTTCTGtatacatgtttgtttgttttttaatgcGGTCTCTTACACATGATTTTGAATACATAGGCAATTTTGTaactttttgtttttattttgggaGGAGTCTTATCACTTGCAAAAAAAAATCGACTTCATAAATAAACAATTTTAAACAGGCA

Function

NR:

description
casein kinase II subunit alpha-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965874.1 True 2931 mRNA 0.52 15 3106571 3120111

Neighbor

gene id symbol gene type direction distance location
LOC110506763 pon2 coding downstream 331 3099268 ~ 3123981 (-)
LOC110520730 LOC106573659 coding downstream 8412 3091532 ~ 3098159 (-)
LOC110506785 LOC106593475 coding downstream 30068 3058329 ~ 3076503 (-)
LOC110506699 LOC106606088 coding downstream 47806 3022808 ~ 3058765 (-)
LOC110520729 LOC106606076 coding downstream 109146 2992224 ~ 2997425 (-)
LOC110506836 LOC106605978 coding upstream 31898 3152009 ~ 3162923 (-)
LOC118944808 NA coding upstream 117364 3237475 ~ 3238019 (-)
LOC110507312 LOC106595913 coding upstream 501711 3621822 ~ 3625100 (-)
LOC110507329 LOC106606059 coding upstream 599589 3719700 ~ 3725695 (-)
LOC110506742 LOC106584706 coding upstream 872903 3993014 ~ 3998119 (-)
G216946 NA non-coding downstream 18029 3088309 ~ 3088542 (-)
G216945 NA non-coding downstream 18342 3087808 ~ 3088229 (-)
G216944 NA non-coding downstream 19769 3086178 ~ 3086802 (-)
G216942 NA non-coding downstream 24465 3081892 ~ 3082106 (-)
G216938 NA non-coding downstream 32141 3073998 ~ 3074430 (-)
G216956 NA non-coding upstream 11684 3131795 ~ 3132019 (-)
G216964 NA non-coding upstream 31512 3151623 ~ 3151936 (-)
G216969 NA non-coding upstream 40164 3160275 ~ 3160547 (-)
G216971 NA non-coding upstream 44122 3164233 ~ 3164979 (-)
G216902 LOC106606079 other downstream 46827 3046005 ~ 3059744 (-)
G216811 NA other downstream 368104 2736861 ~ 2738467 (-)
G216059 NA other downstream 981219 2124176 ~ 2125352 (-)
G216066 NA other downstream 984714 2121203 ~ 2121857 (-)
G216038 NA other downstream 1048142 2057915 ~ 2058429 (-)
G217261 NA other upstream 218075 3338186 ~ 3338580 (-)
G217459 NA other upstream 566291 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1318985 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1418551 4535483 ~ 4553394 (-)
LOC118944839 LOC106573494 other upstream 1523859 4634932 ~ 4648920 (-)

Expression


Co-expression Network