XLOC_021560 (zgc:153722)


Basic Information

Item Value
gene id XLOC_021560
gene name zgc:153722
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16774589 ~ 16788230 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042803
GTGCATATCCGTACTTTCGGTTTGAAGGAAGTTATTAAACGGGTTTAAATGTGACTAACTAACAGGAGAATTATAACGCATCACGGTCAATACAGGTGACTTCGAACTAATCCTTAAAGGGAAAAATGGGCCAGGCTGAGAGCAGAAACACAGATGCTCCTTTGACGGATGTGAGGTCCTTTGAAAGCAGATCGGCGGAATTCTCAGGTGTGATGCCAGATGTTCCTTTAACTGTGGTCGAGGAGATCTTGCTGAACCTGCCCGCTCATCATGTGGTTAACGAATGTCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGCTGCACACTGGAGAGAGCGCTGTATGAGAGAGGGGATTCAGCCCTGTGATGCTTCCAGACCCCCAGTGGACTGGTGCCAGTTTTATTTTATAACTAAGAAACGACGTAACCTGATCAAGAATCCAGTAGCTGATGATGAATTTCAAGGATGGGAGATTGTCGAGAATGGAGGTGACCGCTGGCAAGTCGAAAACAATAGAAGACCATTACCAGACAATACAATCACCCAATGTTTTGTAACATCTTATAGGTTGTGTTTGAAGCGACAGCTGATTGATTTGCAGAAAGAAGGCTACAGTGCTGCTTTCATGGATCATCTGCAACCTCACATCAAAATCTCAGACTGGTATGGACCACGTAGGGATTGTGGATGTGAGTATCAGATCTGTGTGGAGTTGCTTGGTCATAAGAAGAACCGCATCAGTGTCTTTCAGCCTGAGAAAGTGTTCATTAAAGCGTGGAATGATGAGCCGTGGGGTCACATGATTCATGTCTTCAAGGATTATGGACCTGGTGTTCGGTTTATCCGTTTCACTCACGGAGGGAAGGACACTCAGTTCTGGGCAGGCTGGTATGGAATAAGAGTTACTAACAGTAGTGTGGAGATCTGCCCAGCTGCAGAGAGAGAGTCATTTCCTGTATGATTATTTTATACTTCGTTAAGTCATTCTGATGATGGAGCAGTCATTCTAATTATTCTAATGATGATGTTTGTATACAACacacaacattttaaatgtaaacgtTAGCATTTATAATAATTCAGTGAAGTGAAACTTGTATAATCAGGGTTTCCACGagatcttaaaaagtctaaaatttataaattttaagccataaaaagacttaaatttgctgttcaaggtcttaaatatttttgcactggtcttatttttccgatgttCATGTAACTTAATATCTAATGTTGACTTACAttcttttttgttgctgttgcttggttttcgtggggttgtagttctttatttcactagtcctaaTGTACTTTGaagtattacaactacaaatgagaccaacgTGAAATAGCCAATCAGCTCTCTGTTATTAAACTCAGTGCTTGTGCTGAA

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0006516 glycoprotein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-84 Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000071044

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042803 True 1412 mRNA 0.41 7 16774589 16788230

Neighbor

gene id symbol gene type direction distance location
XLOC_021559 si:rp71-1k13.6 coding upstream 1310 16760845 ~ 16773279 (+)
XLOC_021558 fbxo44 coding upstream 16834 16748806 ~ 16757755 (+)
XLOC_021557 snphb coding upstream 132408 16620801 ~ 16642181 (+)
XLOC_021555 ntsr1 coding upstream 248891 16430559 ~ 16525698 (+)
XLOC_021556 CU041345.1 coding upstream 328549 16444961 ~ 16446040 (+)
XLOC_021561 NA coding downstream 9870 16798100 ~ 16798722 (+)
XLOC_021562 zgc:114081 coding downstream 18979 16807209 ~ 16811727 (+)
XLOC_021563 zgc:100832 coding downstream 26738 16814968 ~ 16823262 (+)
XLOC_021564 zgc:173570 coding downstream 35155 16823385 ~ 16854489 (+)
XLOC_021565 AL732515.2 coding downstream 70687 16858917 ~ 16859033 (+)
XLOC_021554 NA non-coding upstream 367163 16406558 ~ 16407426 (+)
XLOC_021553 AL928725.1 non-coding upstream 417360 16356708 ~ 16357229 (+)
XLOC_021552 NA non-coding upstream 495095 16272565 ~ 16279494 (+)
XLOC_021551 NA non-coding upstream 505851 16267497 ~ 16268738 (+)
XLOC_021571 BX927275.1 non-coding downstream 358085 17146315 ~ 17211806 (+)
XLOC_021573 NA non-coding downstream 466268 17254498 ~ 17254757 (+)
XLOC_021576 NA non-coding downstream 624295 17412525 ~ 17447163 (+)

Expression


Co-expression Network