LOC110506836 (LOC106605978)


Basic Information

Item Value
gene id LOC110506836
gene name LOC106605978
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3152009 ~ 3162923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586699.2
TATCTgtgtagaggcagagggaggctAACAGCACACTGAGGGGAACCCAGAGGAAACAGACGCTCACAATATAGCCAGCCAGGAGTGAAGGAGGGGTccaccttgagagagagagagagagaggtgagacagagaaagagagaggaagagagagagagagagagagagaggtggagagaagcagagaaagagcgagagatatCAAATAGTGATTTAATCTGAGTGTCTTGATCTCTTTTGTCCTCATGTCCAAGGATTAAGTAGAGGATCTACAATACTGGGGGGATCTGGTCTTTCTACAGGTCTCTATATGAGAgaggagtctcccacctgtcttGTAGATCTGGACTGATGTCTTTTACGATGGTGCGTACGGCTCCCCCAAGCCGCTTCCTCTTCTCCGACATCAGCATGATGtcagaggacgaggaggagaacGGCGGCAGCGAGAGCTCGGGCTCCGACTCCCAGAAGTCCTCCTTCCGTCTCAACGGCGGCTCCAACGGGTTTCAGATCAAGGTGGGAAGCAGGAAGAGGAAGTTCTGCGGAGTTGCTGGGAGGCTGGCGGGGCCCCCGATGGTGGTAGGGGCCCCGGTGGTGGAGGTGCGGCAGCGGAACGTGGCAAACGCTCGAGAGAGGGACCGCACCAACAGCGTGAACACGGCCTTCACTGCCCTGAGGACCCTCATCCCCACCGAGCCAGCTGACAGGAAGCTGTCCAAGATCGAGACTCTGCGGCTGGCGTCCAGCTACATCTCCCACCTGGGTAATGTGCTGCTGGTGGGCGAGGCGTGTGGGGATGGGCAGCCGTGCCACACCTCCACACCCCCATTCCACCACCACACCCTCCACAGTCTCAGCCCCTCGCCCGGCCAGGGCTCAGAGaaccagcccaaacacatctgTACTTTCTGCCTCAGCAAGCAGAGGAAAATGaacaaagacagagacagaaaaacaactgTCAGAAGATAACGCCTGAAGACCAGAAACATCCAGAGGATAAATATCCAACACTCTTGTGAAGGATCAGTTCAATTAGCCTATTCTTCAAATGAAAGTTGTAATTACAGTTGTGTacttaataataatacaatatttgtatcatgtgtatatatatatatatatatgtatatattgaaAGCACAATGGTGTATTTAAGACCATGGAGGATTTGATATGTGTGTTAAGGGAGGATGTGGCAGCAAAAAGTCCATGAAACATGGGATGATATATAGACTCATGACCATTTAGTTAATATCTATCCTTAAACTACTGGGCATTATAATGAACAGGCCGAGGAGGACAGCTCTTTCAACGGCTGcagcccaaatggcactctattccctatattgtgcactacttggGCTCTGGACACACAAATGACTCGTTACTGAAACTTCCACGGACTTCAGAGCACCTAAATATGACATAACACCACTCTAGAACCCTCCCTGGACTGTATGCCCTTCACTCTCATCAATACGTGCTGGATGTTCATGTTATTGATGTTCAACATATTGTGCTATTACGCTGATGGATCTGAAGTGTACTGGCTGAATCATGGGAGAAAGGCAATCCTTTAGGAAGAATCAGCAGTAGTTCAGTACCATGCAGACCCTGACATCCCCCACCCTTTCATCAATTACCAATCAGTTGGATTTCTAAAGCTCTTCTCTTTTTTACATCAACAGTTGTTACAGAGTGCTTTTCAGAAGCACAAGCAGAAGCACAGCCCTCAGCCTCAGACAGTGGTGATGGTGACTGGCAGAGCAGAGGAACAGATCCTAGATTACATCTGCAGGTAGAGCTCTGGAAGTCTGCCTGTCCCGTCCCCTGACTGTCCTCTCGTTTACCTTTGGAATTCCATGtgctccctccgtctctcctcctcttctcctgcgtTCTTCCTTCTTTTTCCCAGGAGCGCTACTGACTCACAGGCTCTGTTGTGATGGCTTTACAATGTGTGCAGGGTTCACTCAGATTGTCCTCTGTCCTGCATCTTTTCTGCTTCCTTTTCTGTCCGCCATCCGTGACCCCTgtttgaagaagaagaagaggtccACTTCATTGTGCTATATCCATGGATGTCCAACTGCTCCTTGTCTTGTCCTTTTTGTCCGACCCCTCCAAAgacttacacacacatacagtggttTGAGAGCTCTGACAGATTTCGGTCCACCTCCTGAAAAATCATCAAGATCTTTTCATAAATAGTTGAACATTTGGAAATCTGGGCCAATGTTGTGTATTGTTtatgtgtttttgta
>TU247194
TTTAAGACCATGGAGGATTTGATATGTGTGTTAAGGGAGGATGTGGCAGCAAAAAGTCCATGAAACATGGGATGATATATAGACTCATGACCATTTAGTTAATATCTATCCTTAAACTACTGGGCATTATAATGAACAGGCCGAGGAGGACAGCTCTTTCAACGGCTGcagcccaaatggcactctattccctatattgtgcactacttggGCTCTGGACACACAAATGACTCGTTACTGAAACTTCCACGGACTTCAGAGCACCTAAATATGACATAACACCACTCTAGAACCCTCCCTGGACTGTATGCCCTTCACTCTCATCAATACGTGCTGGATGTTCATGTTATTGATGTTCAACATATTGTGCTATTACGCTGATGGATCTGAAGTGTACTGGCTGAATCATGGGAGAAAGGCAATCCTTTAGGAAGAATCAGCAGTAGTTCAGTACCATGCAGACCCTGACATCCCCCACCCTTTCATCAATTACCAATCAGTTGGATTTCTAAAGCTCTTCTCTTTTTTACATCAACAGTTGTTACAGACAGAAGCACAGCCCTCAGCCTCAGACAGTGGTGATGGTGACTGGCAGAGCAGAGGAACAGATCCTAGATTACATCTGCAGGTAGAGCTCTGGAAGTCTGCCTGTCCCGTCCCCTGACTGTCCTCTCGTTTACCTTTGGAATTCCATGtgctccctccgtctctcctcctcttctcctgcgtTCTTCCTTCTTTTTCCCAGGAGCGCTACTGACTCACAGGCTCTGTTGTGATGGCTTTACAATGTGTGCAGGGTTCACTCAGATTGTCCTCTGTCCTGCATCTTTTCTGCTTCCTTTTCTGTCCGCCATCCGTGACCCCTgtttgaagaagaagaagaggtccACTTCATTGTGCTATATCCATGGATGTCCAACTGCTCCTTGTCTTGTCCTTTTTGTCCGACCCCTCCAAAgacttacacacacatacagtggttTGAGAGCTCTGACAGATTTCGGTCCACCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586699.2 False 2276 mRNA 0.49 2 3152009 3162923
TU247194 True 1017 lncRNA 0.34 2 3152092 3153128

Neighbor

gene id symbol gene type direction distance location
LOC118936609 LOC106605979 coding downstream 31898 3106571 ~ 3120111 (-)
LOC110506763 pon2 coding downstream 45769 3099268 ~ 3123981 (-)
LOC110520730 LOC106573659 coding downstream 53850 3091532 ~ 3098159 (-)
LOC110506785 LOC106593475 coding downstream 75506 3058329 ~ 3076503 (-)
LOC110506699 LOC106606088 coding downstream 93244 3022808 ~ 3058765 (-)
LOC118944808 NA coding upstream 74552 3237475 ~ 3238019 (-)
LOC110507312 LOC106595913 coding upstream 458899 3621822 ~ 3625100 (-)
LOC110507329 LOC106606059 coding upstream 556777 3719700 ~ 3725695 (-)
LOC110506742 LOC106584706 coding upstream 830091 3993014 ~ 3998119 (-)
LOC110506736 LOC106584706 coding upstream 866169 4029092 ~ 4039160 (-)
G216964 NA non-coding downstream 73 3151623 ~ 3151936 (-)
G216956 NA non-coding downstream 19990 3131795 ~ 3132019 (-)
G216946 NA non-coding downstream 63467 3088309 ~ 3088542 (-)
G216945 NA non-coding downstream 63780 3087808 ~ 3088229 (-)
G216971 NA non-coding upstream 1310 3164233 ~ 3164979 (-)
G216980 NA non-coding upstream 25132 3188055 ~ 3189078 (-)
G216981 NA non-coding upstream 27393 3190316 ~ 3190593 (-)
G217000 NA non-coding upstream 64073 3226996 ~ 3227433 (-)
G217010 NA non-coding upstream 78448 3241371 ~ 3242201 (-)
G216902 LOC106606079 other downstream 92265 3046005 ~ 3059744 (-)
G216811 NA other downstream 413542 2736861 ~ 2738467 (-)
G216059 NA other downstream 1026657 2124176 ~ 2125352 (-)
G216066 NA other downstream 1030152 2121203 ~ 2121857 (-)
G216038 NA other downstream 1093580 2057915 ~ 2058429 (-)
G217261 NA other upstream 175263 3338186 ~ 3338580 (-)
G217459 NA other upstream 523479 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1276173 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1375739 4535483 ~ 4553394 (-)
LOC118944839 LOC106573494 other upstream 1481047 4634932 ~ 4648920 (-)
G216969 NA non-coding upstream 7147 3160275 ~ 3160547 (-)

Expression


Co-expression Network