LOC110506902 (LOC106573706)


Basic Information

Item Value
gene id LOC110506902
gene name LOC106573706
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3310514 ~ 3313472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586778.2
cacagagagaggctgCAGCAACagtgagaaagagatagagagagagctagagagagagagagagagagagagagagagagagagagagaagtggagcgGTGATGGTCCATCAACTGACATTATTATTTTTCAGCCAAATGTAAATAGGCTACCAATCAGAGTTGTAAATAATTGGAAAGCAATAAATAACGCTGACAAGTGTTACCCATTTTTTTGTTGCACTCTTACAGTACAGCAGATTCTCTCGTGTGTTTTGCATTTATCCTCTATTGGCACGCGGGAGAAAGAGGCGCACTCTGCAGGGTGCGTTCAGCTCGCTCCTCCGTCGTACGCGAGCCTCTGAGAGGGAGCTATCCAGTGCTGAAGTTGCATTTCTTCCCTTCGCAAGACACGGCGTTGCAGGTAGAACAGAGAAACCTAAGCACTACGGGTTGGCTGGGGGTTTGTTtgactgactgggtgtctgaTACTCTACGCAGCCAGGCATCCAAAAGCTCAGCCTTAAATATCCAGCTCTACATTGGCGTTGCATGAGGACAGTAACCCTGCCCTGGACGGTTGTTGTTTCGGTGCAACACCAGAAACATGCCAAGGTCTTTCCTGGTTAAAAAGGTGAAGCTTGATGATTTTTCATCCAGTGATTTTGAGAGTTCTTATGGACGATCCAGGACCGACGTCAGTCTACGGATTCACGATAAAGGGTACATTAGTGACTACATCAGCCCGTCTGTCTACGATGGAGAAAGCGACGGTGCCATTAAAGTTCCCTCTCCGGAGCCACTCTACGATGGAATCCACAGCGTCTACGGCGCCCCAGACTCAGACCAGCCTGACAGTCCGCAGTCGGACGTCACCTCCGGCTACATCAATGGGGACACCGCGGTGAGTGATTGCTACACGGTGGACGCGTTTTACATCACGGACGGAAGGTCACGGAGGAAAGTAATCAGCAGCCCCAGCAGCAGGAGCATACAGCGTCACACATGCAACGAATGTGGGAAAACCTACGCCACGTCTTCCAACCTGAGTAGGCATAAGCAGACCCACCGGAGCCTGGACAGCAAGATGGCCAAGAAGTGCGCAACCTGTGGGAAAGTGTACGTGTCCATGCCAGCAATGGCCATGCACCTGCTCACCCATGACCTCAAGCACAAGTGTGACATCTGTGGCAAAGCTTTCAGCAGACCTTGGCTACTGCAGGGCCACATGAGGTCACACACGGGTGAGAAGCCCTTTGGGTGCGCACACTGCGGAAAAGCGTTCGCCGACCGCTCCAACCTGCGTGCGCATATGCAGACTCACTCCGCTTTCAAGCATTTCAAATGCAAACGGTGCGACAAGACCTTCGCTCTCAAGTCCTACCTGAATAAGCACTACGAGTCCGCGTGCTTCAAAGGCGCGTTCTCGCCCTTGAGTCCTGATCTCGATGACTCTCCATGACGTCCACATTAAAAGTGCAGACAAAAACATTATATTTTTGGTTGACTAATTCTGCCAAACCTTTCCTAAAATCCACCTCAACTTCCAGTGGAACCACAATAATAGCACAATTTTTCTGTATTCTCCTTGAAATCCACCCGAAGGAATTACTGATGATCTTCGCATGCACTTAAaaatcctcttcctcctccagtcACGTGGATAGAATATACCTTCCACCGCGCGTAAATATGAAATCATATATTTTGAAATGTGACGAAGATGACAATACTGGATTGCTCCAAACAAAAGTCGAACATTTTAATGTTGGATAATAATGTACTGCTGCAACTGACCATACTCTCCGTTGAGGTAAATGCCATTTATGTttgtattaattaattaatctatttatttatgtatttatttatttatctatttatacATTAGGCTATTTATATGTATTTGTTTATATAGTATGTCTGACATATTGGTCTGTTTTTATTTGATACCACTACCTATTATTTGCACTTTAATGTGTGAATTTGCCAACCTCTCATGAACAGGCCAAAGCGTTGTCACTTATTCTTCGTTTACTACCATTTTAAATTATTGCATGCAAAAATGAAATCTATGCCAGTATCACAAAGCTTatgatttttttcttcttctccaaaATCTAGATAGTATCTGTTGGCAATATTTCTGTTGAAGCCACATGACGAATTATAAA

Function

NR:

description
transcriptional repressor scratch 1-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09219 SCRT; scratch

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586778.2 True 2152 mRNA 0.45 2 3310514 3313472

Neighbor

gene id symbol gene type direction distance location
LOC110506857 mroh1 coding upstream 68303 3202424 ~ 3242211 (+)
LOC110506827 LOC106573691 coding upstream 180457 3125511 ~ 3130057 (+)
LOC110518590 LOC106605982 coding upstream 219496 3081967 ~ 3091018 (+)
LOC110506718 LOC102207154 coding upstream 288847 3017105 ~ 3022686 (+)
LOC110506694 aif1 coding upstream 305846 2997993 ~ 3004668 (+)
LOC110520733 LOC106605973 coding downstream 145660 3459132 ~ 3491968 (+)
LOC118944810 NA coding downstream 174526 3487998 ~ 3490683 (+)
LOC110520734 LOC106605972 coding downstream 180644 3494116 ~ 3507117 (+)
LOC118936611 LOC106573422 coding downstream 194136 3507608 ~ 3533097 (+)
LOC110520752 LOC106606080 coding downstream 221047 3534519 ~ 3556267 (+)
G217036 NA non-coding upstream 6335 3303481 ~ 3304179 (+)
G217035 NA non-coding upstream 17401 3292897 ~ 3293113 (+)
G216745 NA non-coding upstream 28688 3281555 ~ 3281826 (+)
G216742 NA non-coding upstream 34091 3276107 ~ 3276423 (+)
G216733 NA non-coding upstream 51315 3258630 ~ 3259199 (+)
G217043 NA non-coding downstream 1451 3314923 ~ 3315144 (+)
G217047 NA non-coding downstream 10019 3323491 ~ 3324074 (+)
G217048 NA non-coding downstream 11165 3324637 ~ 3324851 (+)
G217055 NA non-coding downstream 23216 3336688 ~ 3337372 (+)
G217056 NA non-coding downstream 25003 3338475 ~ 3338765 (+)
G216673 NA other upstream 202281 3106354 ~ 3108233 (+)
G216640 LOC106606088 other upstream 268997 3039986 ~ 3041517 (+)
G216438 NA other upstream 735615 2572395 ~ 2574899 (+)
G216353 NA other upstream 847770 2461217 ~ 2462744 (+)
G217146 NA other downstream 166844 3480316 ~ 3481536 (+)
LOC110507370 LOC106606027 other downstream 413058 3725954 ~ 3733696 (+)
G217809 LOC106593792 other downstream 829171 4142643 ~ 4143089 (+)
G217870 NA other downstream 984084 4297556 ~ 4302856 (+)

Expression


Co-expression Network