LOC118944810


Basic Information

Item Value
gene id LOC118944810
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3487998 ~ 3490683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040131.1
ctatactacacagtggctatactacacagtggctatactacacagtggctatactacacagtgactatactacacagtggctatactacacagtggctatactgCACAGTGGCTATACTgcacagtggctatactacacagtggctatactacacagtggctatactacacagtgactatactGCACAGTGGCTATACTGCACAGTGGCTATACTgcacagtggctatactacacagtggctatactacacagtggctatactgcacagtggctatactacacagtggctatactacacagtggctatactgcacagtggctatactacacagtggctatactacacagtggctatactacacagtggctatactgcacagtggctatactacacactgACTATACACACAGTGACTATACCGcacagtgactatactacacagtggctatactacacagtggctatactacacagtgacaatactacacagtggctatactacacatTGGCTATGCTATACTgcacagtggctatactacacagtggctatactacacagtggaaATACTACACATTGGCTATGCTATACTgcacagtggctatactacacagtggctatactacgtagtggctatactacacagtggctataccACACAGTGGAAATACTACACAGTGGAAATACTACGtagtggctatactacacagtggctatactacgtagtggctatactacacagtggctatactacacagtggaaATACTACGtagtggctatactacacagtggctataccacacagtggctatactacacagtggaaATACTACGTAGTGGCTgtactacacagtggctatactacacagtggaaATACTACACATTGGCTATGCTATACTgcacagtggctatactacacagtggctatactacacagtggatATACTACACAGTGGCAATACttgtccagacacacacacacacacatacaaacacacacacacacacgtgggtgCACTTGGCTTATATCCAGCACTCTTCATCATTGACGAAGGTCAGTGTTGGAGGGACGTTAGTGTAgctgggatgagaggaggaggaaaggagtgGAACACAAGGCCATATCAGGCTGCTGTGCTTCTGGAGGAGGAGATAAGAGCAGTGTACGGTGAGGAGCCTGTTCAGTCAGCAGGTTCACAGAGATacggctccctccctctcctcatccccatcccggacagacagacaaacggggctgctgctgctgttttAAACGCTGACCTTCAGAGGACAGCGAGCGGAGCAGAGAGGAGCGGAGCACCACAGCGCCCTGCGGGACaccagtctccccctctcccctgagTAATGACAGGAGGGATCCTTGtgtcacacacatacagacagacacacacacacacacatacacacacacactctctcacacacatacacacacacaaacccctgaGTAATGCCAGGAGGGATCAGGAGACTGGGATCTGTAGATCAGAGGGTCACACAGCAGGGTTCTGTCAGCTCCCCATCACTCAGAGCAATGAGGCGAGGCTTGATAGTCATCCAGCAGTCATTCCGTAGGTTAGCTACCTGTCTGTTACCTCAGATACCTTTATTTCCTGTACAAACTAGGTGTCATTCCACaggttagctgtctgtctgttacctcaGGTGTCGTTCCGTAGGTTAGCTACCTGTCTGTTACCTCAGATACCTTTATTTCCTGTACAAACTAGGTGTCATTCCATAGGTTAGCTGTCTGTCTGATACCTCAGGTGTCGTTCCGTAGGTTAGCTACCTGTCTGTTACCTCAGATACCTTTATTTCCTGTACAAACTAGGTGTCATTCCATaggttagctgtctgtctgttacctcaGGTGTCGTTCCGTAGGTTAGCTACCTGTCTGTTACCTCAGATACCTTTATTTCCTGTACAAACTAGGTGTCATTCCATaggttagctgtctgtctgttacctcaGGTGTCATTCCATaggttagctgtctgtctgttacctcaGGTGTCATTCCATaggttagctgtctgtctgttac
>TU247359
GGTGTCATTCCATaggttagctgtctgtctgttacatcAGGTGTCATTCCATaggttagctgtctgtctgttacctcaGGTGTCATTCCATaggttagctgtctgtctgttacctcaGGTGTCATTCCATaggttagctgtctgtctgttacctcaGGTGTCATTCCATaggttagctgtctgtctgttacctcaGGTGTCATTCCGTaggttagctgtctgtctgttacct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040131.1 False 2073 mRNA 0.47 3 3487998 3490486
TU247359 True 232 lncRNA 0.39 2 3490374 3490683

Neighbor

gene id symbol gene type direction distance location
LOC110506902 LOC106573706 coding upstream 174526 3310514 ~ 3313472 (+)
LOC110506857 mroh1 coding upstream 245787 3202424 ~ 3242211 (+)
LOC110506827 LOC106573691 coding upstream 357941 3125511 ~ 3130057 (+)
LOC110518590 LOC106605982 coding upstream 396980 3081967 ~ 3091018 (+)
LOC110506718 LOC102207154 coding upstream 466331 3017105 ~ 3022686 (+)
LOC110520734 LOC106605972 coding downstream 3630 3494116 ~ 3507117 (+)
LOC118936611 LOC106573422 coding downstream 17122 3507608 ~ 3533097 (+)
LOC110520752 LOC106606080 coding downstream 44033 3534519 ~ 3556267 (+)
LOC110520760 LOC106606028 coding downstream 67794 3558280 ~ 3707777 (+)
LOC110507370 LOC106606027 coding downstream 235468 3725954 ~ 3733696 (+)
G217081 NA non-coding upstream 119101 3368331 ~ 3368897 (+)
G217079 NA non-coding upstream 121785 3365829 ~ 3366213 (+)
G217074 NA non-coding upstream 126808 3360859 ~ 3361190 (+)
G217072 NA non-coding upstream 128496 3359030 ~ 3359502 (+)
G217071 NA non-coding upstream 129340 3358302 ~ 3358658 (+)
G217220 NA non-coding downstream 196110 3686596 ~ 3688096 (+)
G217223 NA non-coding downstream 220311 3710797 ~ 3711204 (+)
LOC110493965 LOC106573899 non-coding downstream 259984 3738335 ~ 3754296 (+)
G217244 NA non-coding downstream 309435 3799921 ~ 3802530 (+)
G217146 NA other upstream 6462 3480316 ~ 3481536 (+)
G216673 NA other upstream 379765 3106354 ~ 3108233 (+)
G216640 LOC106606088 other upstream 446481 3039986 ~ 3041517 (+)
G216438 NA other upstream 913099 2572395 ~ 2574899 (+)
G217809 LOC106593792 other downstream 652157 4142643 ~ 4143089 (+)
G217870 NA other downstream 807070 4297556 ~ 4302856 (+)
G217896 NA other downstream 961268 4451754 ~ 4452556 (+)

Expression


Co-expression Network