LOC110493962 (pgcp)


Basic Information

Item Value
gene id LOC110493962
gene name pgcp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3754666 ~ 3803724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966117.1
GCAAAATGGAATTGTCAACGAACGTGAAAACGCATGGCTGTCCCTACTGCTTTGCCGTAGTCATTCATCGCGGAAGTTATTTTGAAATTGATAAGAAATAGCTAGTTGGCTAGAAGGAATAACATTTATTGTGAATTATTCCATCTGTCAAGACGGTCAGCAATTTACCAACTAACTGTAGAAGAAGATGCAGGGCCGGCAGATAAAACAATGTGGCCTTTCCTCACTGACTCTTTTGGTCACATTTCTCCATTGTAACTGTTTGCCACACAGTACTGGTGGAAAGCCATTTCCAGAGACCGCTAAAGAAATTGCCAGCTATGCAAAGGTAGCCAAGAGCATCATAGACTTGGCTGTGTATGGCAAAGCCCAGAACCGCTCCTATGAGAGACTGGCAGACTTCACAGATACAATAGGGAACCGTGTCAGTGGCTCTAAGAACCTGGACCTGGCTATCAAGTACATGTTCAGTGCCCTGAGGAAGGATGGGCTGGAGAACGTACATCTAGAACCAGTGAAGATCCCACACTGGGTCAGGGGAGAGGAAAGCGCCGTGATGCTACAGCCCCGGAACCACACCATGGCCATCCTTGGACTGGGCAGCAGTGTGGCTACACCCCAAGGAGGCATTGAAGCAGAGGTGCTGGTGGTGGAGTCTTTTGAGGAGCTGAAAAAAAGGCAGAAGGAAGCCATTGGGAAGATTGTGGTGTATAACCAGCCCTTTGTCAGCTATGGGGAGACTGTGCAGTACAGGGAGTTTGGGGCATCCAAGGCAGCTGAAGTAGGAGCTGTGGCTACTCTCATCCGGTCCATCACACCCTTCTCCATCAACAGTCCTCACACAGGCTGGCAGGACTACCAGGAGGGAGTGCAGAAGATccctaccgcctgtatcacagtGGAAGACGCCATGATGATGGCCAGGATGGCTAAGCGAGGCCAGAGGATTGTGGTCCGACTCACCATGAACGCCCAGACCTTCCCTGATGCTGACTCCTTCAACACTGTGGCTGAGATCATCGGCAGCGAGCACCCAGAACAGGTGGTGCTGCTCAGTGGTCATCTGGACAGCTGGGATGTGGGCCAGGGGGCCATGGATGATGGTGGTGGAGCGCTCATCTCCTGGGAGGCCTTGTCTCTGCTTAAAGACCTGGGTCTGCGTCCCAGAAGAACCCTCCGGACAGTGCTGTGGTCtgcagaggagcagggaggggttGGAGCGCAACAGTACTTCCAGCTTCACAAGGTGAACATCTCTAACTTTAACCTAGTGATGGAGTCTGACCAGGGTACCTTCACCCCCCTGGGACTGCAGTTCACAGGCTCAGTCCAGGCCCGGGCTGTCATGGCTGAGGTGATGAAGCTACTGAAgcccatcaacaccaccaccctggAGGAACACGGAGAGGGAATTGATATAGAGATGTGGATGGATGCTGGCGTGCCAGGAGCCAGCCTGCACGTTGCAGACAGTAGATACTTCTGGTTCCACCACACCAACGGAGACACCATGTCTGTTCAGAGCCCCATAGAAATGAACCTGTGTTCGGCCCTGTGGGCGGTGGTGGCCTACGTAGTGGCTGACCTGGAGGAGATGCTGCCCAGGTAGTCCACTAGGACTGTCCTGCATCCTAAACGGCACCCTATCCCCTGTATAGTTTTGGGAGAAGAATATGGAGAATATGGTGCCATAAAAATGCTTTACTGTTGTTTGTCCTCCAGAAGGGCTTCCTGCAGTAACCTCTGTGAAATTATACCCCACTCTGGTTAAGTGGCTAAAGAAGAATTAATAGTGTGTATAAACCACACAATGTACAAAATGGAATTAAGTATTTTTGGCATATTATTTCCAGTCAATTTCTTTTATAATGAACACATATGTACTGCATGTTTCATGTTGACTGTCATTATGTCTAATCTGCCAATAAAGCTGGTCATTAATTAGACCAAGGTGCACGT

Function

NR:

description
carboxypeptidase Q

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004180 carboxypeptidase activity molecular_function

KEGG:

id description
K01302 CPQ; carboxypeptidase Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966117.1 True 1959 mRNA 0.50 8 3754666 3803724

Neighbor

gene id symbol gene type direction distance location
LOC110493965 LOC106573899 coding upstream 371 3738335 ~ 3754296 (+)
LOC110507370 LOC106606027 coding upstream 20970 3725954 ~ 3733696 (+)
LOC110520760 LOC106606028 coding upstream 46889 3558280 ~ 3707777 (+)
LOC110520752 LOC106606080 coding upstream 198399 3534519 ~ 3556267 (+)
LOC118936611 LOC106573422 coding upstream 221569 3507608 ~ 3533097 (+)
LOC110507394 LOC106595324 coding downstream 50723 3854447 ~ 3874865 (+)
LOC118964350 NA coding downstream 94502 3898226 ~ 3910037 (+)
LOC118944821 LOC106584755 coding downstream 113267 3916991 ~ 3924440 (+)
LOC110520766 LOC106584755 coding downstream 161734 3965458 ~ 3968265 (+)
LOC110506729 LOC106584755 coding downstream 219251 4022975 ~ 4025061 (+)
G217223 NA non-coding upstream 43462 3710797 ~ 3711204 (+)
G217220 NA non-coding upstream 66570 3686596 ~ 3688096 (+)
LOC118944810 NA non-coding upstream 263983 3487998 ~ 3490683 (+)
G217521 NA non-coding downstream 1087 3804811 ~ 3805064 (+)
G217546 NA non-coding downstream 43027 3846751 ~ 3846981 (+)
G217552 NA non-coding downstream 47094 3850818 ~ 3851040 (+)
G217554 NA non-coding downstream 71219 3874943 ~ 3875184 (+)
G217568 NA non-coding downstream 72175 3875899 ~ 3876116 (+)
G217146 NA other upstream 273130 3480316 ~ 3481536 (+)
G216673 NA other upstream 646433 3106354 ~ 3108233 (+)
G216640 LOC106606088 other upstream 713149 3039986 ~ 3041517 (+)
G217809 LOC106593792 other downstream 338919 4142643 ~ 4143089 (+)
G217870 NA other downstream 493832 4297556 ~ 4302856 (+)
G217896 NA other downstream 648030 4451754 ~ 4452556 (+)
G218309 NA other downstream 1133373 4937097 ~ 4939894 (+)
G218293 NA other downstream 1141279 4945003 ~ 4961450 (+)

Expression


Co-expression Network