LOC110507394 (LOC106595324)


Basic Information

Item Value
gene id LOC110507394
gene name LOC106595324
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3854447 ~ 3874865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966123.1
GCACTCTAAACTCAcatgcagacaggcagacatgaGGAACAGCACTACATACAGCCAGCCATGAGGAGGAGGATCCAACACAGATCAGTCCACTGACTGACAATGTAGTCTACATCACACAACTGTGTAGTGTGGATCCCTGTCCTGGATCTGGACCAGCAACAACAACTAACAAAACTAAAAGAGGACCGTTAGCCTGTGTTTCCTGCTGCCATGCCGTGGTACTTCCTGCCCTGCCAGCCCAGCTGCCACATGATCTGGCTGGTTCTGGCTGCCCTTCTGCTGCTACTGACGGgctatgtgtctgtgtctctggaaGAGCTGCCCAGGGGCCCAGGGGACATAGCTGGCAGCGGGTCCATGAGCGCCAGCACTAACACTAACGCTCGCCAGTACAACTCTATCCAGCACGGATCCTGCACCTATACCTTCCTGCTACCAGATAACGCTGGGGGGAACAGGCCGTGCTTGACGGAGGAGGAGGGGGTCGGCAGCTCCAGCACCAGCCAGGGACAGGGCCAGTACCAGGGGAACACTCTACAGGGAGATGCCCCACTGAAAAAGCCCAAGCTCCCAGGACTGGCCCCGGCTCTGGGGAACCAGAGGATCCAACACCTGGAGAACGTCATGGACAACTACACACAGTGGCTTCACAAAatgGAGAGATATGTGAAGGACAGTCTGAATGTGGAGATGGCTCAGCTGCAGCAGAGTGCTGTCCACAatcacactgctgccatcttgaaTCTAGGCACCAACCTCCTGACCCAGACTGCTCAGCACACACGGAAGCTGACAGACGTAGAGATCCAGGTGTTGAATCAGACCTCCAGGCTGGAGATTCAGCTCTTGGAGAACTCTCTGTCCACCAACAAACTGGAGACCCAGCTCCTCCACCAATCTACAGAGATCAGCAAGCTGCACGACAAGAACAGGCTCTTAGAGCAGAAGATGCAGGAGCTGGAGTCTGGGCACCATGAGGAGCTGGTCACCTTCCAGGAGGAGAGGTCCAGCCTGCAGCAGCTGGTAGCCAGACAGAGCAGTGTGATCACAGAGCTGCAGACCCATCTAGACCAGGCCACTGGCAACAACAGTATCCTGCTTAGCCAACAACAGCAGCTCACTGAGACCGTCAACAGTCTGCTGAAACTCTGCTCTAAGGACAGAGGGTCTGGAGTGGTGGCAAACAGCAACCTTGCCTTTAAGCAAAGAGATTCATCTCATGAGGAGAGAAAGTATCGGGACTGCTCAGAAGTCTTTCAAGCTGGCTTCAACAACAGTGGATTATATACTATTCACATCAACACACAGGAGACCAAAAAGgtttACTGTAACATGGAGGCAGCAGGGGGAGGATGGTCCGTCATTCAGAGAAGAAAAGATGGAACCATGGACTTCCAGAGGACGTGGAAAGAGTACAAGATGGGCTTTGGGAGTCTGTTTGGAGAACACTGGCTGGGGAATGAGTTCGTGTTCCTGCTGACCAGCCAAAGGCCCTACAACCTGAGGGTGGAAGTGACCGACTGGGACGGACAGCAGGCCTTCTCCCACTATGACCGTTTCTACATCGGCAGCGAGAAGCAGAATTACAGgcTGTTCCTGAAGAGTCACAGTGGAACGGCAGGCAGACAGAGCAGCCTGGTCATCAACGGAGCAGACTTCAGTACCAAGGATATGGACAACGACAACTGCATCTGCAAATGTGCTCTCATGCTCACTGGGGGTTGGTGGTTCGATGCCTGTGGACCATCGAACCTGAACGGGATGTACTACAGTCATGGTCAGAACATGGGTAAACTGAATGGGATTAGGTGGCACTACTTCAAAGGGTCTAGTTACTCTCTCCGTGCTACTACCATGATGATACGACCAGCAGACTTCTGAGAGGACCTTTTGGTGACTGTCGTTGGGTACGTTGTCCATAGACACATTGGCATCATTAGTCATGTTTCCATCCAACTGTTTTTATGCGATAAAGTAAAGTACTGTCCAACAGGTGTGACGGAAACACAAAATAGAAGGTGGGATAATTGTTTGTACTTTGACTTAAAAAATAGCAACCTAATTTAGTTTTCTATGAGGAACTTGGATTCTGACTTTCTGCTGCTTACATGTCCTCTTGAAAGACATTGATTGTTTGAGACAGTATGCTTGAGCACCAGCTCTGCAATGAATCAAACTGTAGAAGTGGGTTACATGAACAGGATATGAATGTAAGATTTGGTGCTTTTGAAAGACTTTAATTTGTCTGGCTTTCATTTCTCTTTTCATTTGACTCCCTTTAATTTGTCTCTTTCATGTATCTGTTGTGTATTGTTCTTCTATGGGTAAGGTATTCCTGTTAACATGTTGTGAATCAGTGTACTGCTCTCTTAGTCTGCACTGTGGGCAGAGAAGCCTGATGGCCTAGACTGGATACACTTCAGAACActgttatggatattatttgcCTATATAGtggattgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

NR:

description
angiopoietin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966123.1 True 2528 mRNA 0.50 9 3854447 3874865

Neighbor

gene id symbol gene type direction distance location
LOC110493962 pgcp coding upstream 50723 3754666 ~ 3803724 (+)
LOC110493965 LOC106573899 coding upstream 100152 3738335 ~ 3754296 (+)
LOC110507370 LOC106606027 coding upstream 120751 3725954 ~ 3733696 (+)
LOC110520760 LOC106606028 coding upstream 146670 3558280 ~ 3707777 (+)
LOC110520752 LOC106606080 coding upstream 298180 3534519 ~ 3556267 (+)
LOC118964350 NA coding downstream 23361 3898226 ~ 3910037 (+)
LOC118944821 LOC106584755 coding downstream 42126 3916991 ~ 3924440 (+)
LOC110520766 LOC106584755 coding downstream 90593 3965458 ~ 3968265 (+)
LOC110506729 LOC106584755 coding downstream 148110 4022975 ~ 4025061 (+)
LOC110512888 ctnnb1 coding downstream 221884 4096749 ~ 4135152 (+)
G217552 NA non-coding upstream 3407 3850818 ~ 3851040 (+)
G217546 NA non-coding upstream 7466 3846751 ~ 3846981 (+)
G217521 NA non-coding upstream 49383 3804811 ~ 3805064 (+)
G217244 NA non-coding upstream 51917 3799921 ~ 3802530 (+)
G217554 NA non-coding downstream 78 3874943 ~ 3875184 (+)
G217568 NA non-coding downstream 1034 3875899 ~ 3876116 (+)
G217569 NA non-coding downstream 1685 3876550 ~ 3876779 (+)
G217570 NA non-coding downstream 10955 3885820 ~ 3886047 (+)
G217572 NA non-coding downstream 12619 3887484 ~ 3887700 (+)
G217146 NA other upstream 372911 3480316 ~ 3481536 (+)
G216673 NA other upstream 746214 3106354 ~ 3108233 (+)
G216640 LOC106606088 other upstream 812930 3039986 ~ 3041517 (+)
G217809 LOC106593792 other downstream 267778 4142643 ~ 4143089 (+)
G217870 NA other downstream 422691 4297556 ~ 4302856 (+)
G217896 NA other downstream 576889 4451754 ~ 4452556 (+)
G218309 NA other downstream 1062232 4937097 ~ 4939894 (+)
G218293 NA other downstream 1070138 4945003 ~ 4961450 (+)

Expression


Co-expression Network