XLOC_021562 (zgc:114081)


Basic Information

Item Value
gene id XLOC_021562
gene name zgc:114081
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16807209 ~ 16811727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042804
gttgggtctccgggcctgcagcttccccTTACTCAGTTGTGGCGGGGCTTTGGCGCATTATAAGATAGTAGCTACTTTCGATTTGGAGATGATAATCATGTTATGATTCAGCGGATTTAGATGTCCTGGAGCCTGTTATTTGTGTTTACTTGGGCGATCTAAACCGGAAATAAGCACATACACAGTAAAAGAGTCGATTAGAAGTGCTACATTGATCTAATGCGAAAGTAGTTACCGAGCTTATTATTGTTTGTGTTTCAGTATTTGTCTACCAGCCCTAATGAAAACAAATGAGTAAGTCCGAGAGCAGGCATTTTGATTCTGCGTCAAAGGAGTTTGGACATAGATCAGACGTAttCTCAGGTGTGATGCCAGCTGTTCCTCTAGCTGTGGTTGAGGAGATCTTGCTGAACCTGCCCGCTcatcaggtggtgcgagtgtgtCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGCTGCACACTGGAGAGAGCGCTGTCGGAGAGAGGGGATTCAGCCCTGTGATGCTTCCAGACCCCCAAAGAACTGGTGTCAGTTTTACTTTATAACTAAGAAACGACGTAACCTGATCAAGAATCCAGCAGCTGATGATGAATTTCAAGGATGGGAGATTTTAGAGAATGGAGGTAATGGCTgggaaatagaaaataatagaaaacCATTTCCAGACAACACAGTCACCAAATGTTTCACAACATCTTGTTGGTTATGTTTGAAGCAACAGCTGATTGATTTGGAAAAAGAAGGCTACAATGCTGCTTTCATGGATCAACTGCAACCTCACATCAAAATATCAGACTG
>TCONS_00042805
TTTCAGACACGATGACGTCATTGCGAAAGGCAGGGTGGTGttagttCTCAGGTGTGATGCCAGCTGTTCCTCTAGCTGTGGTTGAGGAGATCTTGCTGAACCTGCCCGCTcatcaggtggtgcgagtgtgtCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGCTGCACACTGGAGAGAGCGCTGTCGGAGAGAGGGGATTCAGCCCTGTGATGCTTCCAGACCCCCAAAGAACTGGTGTCAGTTTTACTTTATAACTAAGAAACGACGTAACCTGATCAAGAATCCAGCAGCTGATGATGAATTTCAAGGATGGGAGATTTTAGAGAATGGAGGTAATGGCTgggaaatagaaaataatagaaaacCATTTCCAGACAACACAGTCACCAAATGTTTCACAACATCTTGTTGGTTATGTTTGAAGCAACAGCTGATTGATTTGGAAAAAGAAGGCTACAATGCTGCTTTCATGGATCAACTGCAACCTCACATCAAAATATCAGACTGcttcgTCCCTTATGTTTTACGtggcggatacccttccagccacaacccagtcctgggaaacacccatacactcacattcacacacttacacactagggccaattttgttaatccaattcaccatatctttgggctgtggggtaAGCCAGAGCACTCCCCATGGAAActcatgtgaacatggggagaacattcaaactccgcATAGAAATGCTGACTGGCTCAGCCGTGACTCGAACcagctgtgaggtaacagtgctaaccactcagcttCAGTGCTGCCCCTAATCTGGTtcatgcaacataggctcatcctgaaaatgtagccctgtatacatttctggaggtcacgaattatgtagcctgaagtACTTTTAGCTGCATTgggtctttttaaaaataaacattacagaGTGGTATATcgctgttcctttttgcgcttaacaGCTGACTGCTTAgttccatatggacggctttccagctgttatcagtttgtccgacgaggttcgagtctggtgaagaatggtttcagaaaacacgtaaaatgaaaacagaatccaaaaaataaaataagcacataaataacagggtgaggatgtggtGACATCTGAAACATTGTATAAATCAGGCGAGGACTTTTGTTTTCTgggttgctttttaaaactgacgGGTggttttagggaagtgggtgggcaggtcaatctatgcttttgaaaacactattggttgggtttagggaaggcctctggtggattcgcgaaaataaaaactgctataaaacgtagctcctgggaagtatttggcactctccagaaatgtacatagcaGTATGTTTTCACTATGAGCCAGAGTTGGGTTCATACTACCATGATAATAAGGCTTAAATGATTTAACATATCTTTGACTTATGCAGGATTGCTGTAAGATGCAATGATGATGTAAACTCCCATGAATTCACACTCAGTCATGCTTCATCAAACTATGTAATCAA
>TCONS_00042806
tttcagttCTCAGGTGTGATGCCAGCTGTTCCTCTAGCTGTGGTTGAGGAGATCTTGCTGAACCTGCCCGCTcatcaggtggtgcgagtgtgtCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGCTGCACACTGGAGAGAGCGCTGTCGGAGAGAGGGGATTCAGCCCTGTGATGCTTCCAGACCCCCAAAGAACTGGTGTCAGTTTTACTTTATAACTAAGAAACGACGTAACCTGATCAAGAATCCAGCAGCTGATGATGAATTTCAAGGATGGGAGATTTTAGAGAATGGAGGTAATGGCTgggaaatagaaaataatagaaaacCATTTCCAGACAACACAGTCACCAAATGTTTCACAACATCTTGTTGGTTATGTTTGAAGCAACAGCTGATTGATTTGGAAAAAGAAGGCTACAATGCTGCTTTCATGGATCAACTGCAACCTCACATCAAAATATCAGACTGcttcgTCCCTTATGTTTTACGtggcggatacccttccagccacaacccagtcctgggaaacacccatacactcacattcacacacttacacactagggccaattttgttaatccaattcaccatatctttgggctgtggggtaAGCCAGAGCACTCCCCATGGAAActcatgtgaacatggggagaacattcaaactccgcATAGAAATGCTGACTGGCTCAGCCGTGACTCGAACcagctgtgaggtaacagtgctaaccactcagcttCAGTGCTGCCCCTAATCTGGTtcatgcaacataggctcatcctgaaaatgtagccctgtatacatttctggaggtcacgaattatgtagcctgaagtACTTTTAGCTGCATTgggtctttttaaaaataaacattacagaGTGGTATATcgctgttcctttttgcgcttaacaGCTGACTGCTTAgttccatatggacggctttccagctgttatcagtttgtccgacgaggttcgagtctggtgaagaatggtttcagaaaacacgtaaaatgaaaacagaatccaaaaaataaaataagcacataaataacagggtgaggatgtggtGACATCTGAAACATTGTATAAATCAGGCGAGGACTTTTGTTTTCTgggttgctttttaaaactgacgGGTggttttagggaagtgggtgggcaggtcaatctatgcttttgaaaacactattggttgggtttagggaaggcctctggtggattcgcgaaaataaaaactgctataaaacgtagctcctgggaagtatttggcactctccagaaatgtacatagcaGTATGTTTTCACTATGAGCCAGAGTTGGGTTCATACTACCATGATAATAAGGCTTAAATGATTTAACATATCTTTGACTTATGCAGGATTGCTGTAAGATGCAATGATGATGTAAACTCCCATGAATTCACACTCAGTCATGCTTCATCAAACTATGTAATCAA

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0006516 glycoprotein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-78 Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human FBXO44 (F-box protein 44) and FBXO6 (F-box protein 6).

Ensembl:

ensembl_id ENSDARG00000057899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042804 False 829 mRNA 0.44 4 16807209 16810391
TCONS_00042805 False 1505 mRNA 0.44 5 16807785 16811727
TCONS_00042806 True 1467 mRNA 0.43 4 16807945 16811727

Neighbor

gene id symbol gene type direction distance location
XLOC_021561 NA coding upstream 8487 16798100 ~ 16798722 (+)
XLOC_021560 zgc:153722 coding upstream 18979 16774589 ~ 16788230 (+)
XLOC_021559 si:rp71-1k13.6 coding upstream 33930 16760845 ~ 16773279 (+)
XLOC_021558 fbxo44 coding upstream 49454 16748806 ~ 16757755 (+)
XLOC_021557 snphb coding upstream 165028 16620801 ~ 16642181 (+)
XLOC_021563 zgc:100832 coding downstream 3241 16814968 ~ 16823262 (+)
XLOC_021564 zgc:173570 coding downstream 11658 16823385 ~ 16854489 (+)
XLOC_021565 AL732515.2 coding downstream 47190 16858917 ~ 16859033 (+)
XLOC_021566 zgc:114174 coding downstream 52403 16864130 ~ 16884098 (+)
XLOC_021567 si:dkey-147f3.8 coding downstream 77425 16889152 ~ 16918191 (+)
XLOC_021556 CU041345.1 non-coding upstream 361169 16444961 ~ 16446040 (+)
XLOC_021554 NA non-coding upstream 399783 16406558 ~ 16407426 (+)
XLOC_021553 AL928725.1 non-coding upstream 449980 16356708 ~ 16357229 (+)
XLOC_021552 NA non-coding upstream 527715 16272565 ~ 16279494 (+)
XLOC_021571 BX927275.1 non-coding downstream 334588 17146315 ~ 17211806 (+)
XLOC_021573 NA non-coding downstream 442771 17254498 ~ 17254757 (+)
XLOC_021576 NA non-coding downstream 600798 17412525 ~ 17447163 (+)
XLOC_021578 NA non-coding downstream 661392 17473119 ~ 17477448 (+)

Expression


Co-expression Network