LOC118944829 (LOC106606066)


Basic Information

Item Value
gene id LOC118944829
gene name LOC106606066
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4535483 ~ 4553394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966268.1
GCATGAATAGGGAGACGCTAGTATGTAACTGCCCAGCCAAGTCCCCTTCCGTGTGATGAAACGGAAGTATGCTCACGGCTGTAGGATTAGAGACATTCAGGGCATTTTCGAGAAACTCACGTCCTGCAGTTAACATGGCACATCATACACATATATAGTAAAACCGTCGTTGTACCTCTTGATATGTGGTTCAGTTTAACATGCGTAAAACGCGTGCACAAGCGCAAATGAACACAATTCCATGGAACGCTTCATTGCACGGAACGAATGGATTCATTCTGCGCTGGCTGATGGTCAAGGAAAGCCAGGGGAAAACGCTGGACATTTGATCTCAAGAAAGTGCAGCCTTTTATGAAGCACAACGAATGCATCACAGAGAGCATTTCGTTCAGAGAAGGTATCATAGAGTAACAAATCCTTTTTGGGAGACTGTTCAGCAACTGTTTGGCTATTTGATCTTATGCGCGCAAGTATCGAGCTAACTTATTACATCAAATGGATTCATTATTTAATTGCCTTCAACAGTCTCTGTTTGATGCGCATGGTTGGTTACATTTGAAAGAGTTGTGATGGTGGATTAGAATAATTGGGCGGACACTTACTGTTAACACGTTTGTGCGTAAATGAACAGAGGAATTGATAACGAAAACCGGCAGTGGCCCTTCTCTGTGCTTGGGGAGAATTCGGGTGGGGGACACGCAGCCGATTTCATGTTTGCCACAATATTGGTTTATTCCCCGCAGCATTGACGTAAACAAGAACATACAACTCTGTAATATTAAGTTATAATTACTCTCACATTTCAATACGCAAAACACGTAAAATGTGAATTATGTATGCAAATAAGGAAGACCCGAAGTTGTTTCTATTTCAAAGAGCTTTCATTGACGTTGACTGCCATTCCAATTTCCTTCAAACGCACGTCCTTCACCGGCAGACCTATTTAATCAGTTACACATTTTATTTGGTGTCAGTGAGTGGATACCAATTTTGCACAATAGGAGCAACATTTAATAGAACCATTTAATCTAGTCTATCGTCATTGCATCTATTTACAAAGGCAACCGTAGGCTATGTCTAAATGCCGGTTTAAATACCCCTATTCCAAAGCAGTCGTGCAAATGGCTTCATTCCCTGACTCCGACTTGACGACATGCCCCCTATGCAAACAACTGTGCTGCTCCTCTGCTCCACTCTCCTCCAACTCTTCTACCTCCTCGTCCTCGTCTCATACCTCAACTAGCTCATCTACCTCATCCTCCAGAAGGCTCCACGTCCTCCCATGCCTCCATGCCTTTTGCAGGCAGTGTCTGGAGGGCCAGCGGAACCCCGAAGACCCCTTGAAACTCCGGTGCCCGACTTGTGACCTAAAGGTTCTAATGCCCGTATCAGGAGTAGATGCCTTGCCCTCCTCAAACTTTTTATTTAAGAACATGTTGGATGCCGTGGTAAATTTGTCTGAGGAGCAAATCAACAACACTGTTAGCAGCAGGGGCAACAACTTGTCTCACAGACACAGCAGAGAGCCCCTGTGCAGCTCTTGCAACGAGGGCAATCCCGCTACCTCTCACTGCCGAGACTGCCAGGAGTACCTTTGTAACAACTGTGTATGGGCACACCAGAGGGTCCGGCTTACCAAAGACCATTTCATTGATAGACTAGTGGAGAGTCTGTTTCACCAACACCTGGGGAACCGAACCAACAACTCTAACAACACAGCTACTGCCACTCTGAGCCGGTCCTCCTTCCAGTCGAGCTACTCTCTGCTGCCTGTCTTTCAGGACAGAGAGCATGACAATGCGGTTCTGCATTTCTTCTGTGATACGTGCTCCGTGCCTGTCTGTAGGGAGGCCAGTGTGGGTTGTCACTCAGGCCACAGCCTCCTCTACCTCCAGGATTCCTTGCAGGACTCCAGGACCCTCACCATCCAGCTGCTGGCAGACGCCCAGCGGGGCAGGCACGCTGTACAGCTGAGCATTGAGAAAGCACAGGCCGTTGCTGAGCAGGTGGAACTGAAGGCCATGGTGGTCCAGTCAGAGGTCAAAGCCATCACACAGCGTTATAAGAAGGCCCTGGAGGAACGAGAGTGTGAACTACTGTGGAAAGTTGAGAATATCCGTCAGGTGAAAGCCAAGTCCCTCTATCTCCAGTTAGAGAAGCTGCACCAGAACCTGACCAAGCTGGACAGCACCATCTCTACAGTAACCCAGGTCCTAGAGAAGGGCAGTAGTCTGGACCTGGTGCTGGCCAGAGAGAGCATGCTCCTCCAGATCACAGAGCTGAAGGCCCTCAGGGAGCTGTTACTGCCGCAGGATGATGATCGCATCCTGTTCACCACCCCCGACCAGACTTTGCTCCTCGCCATCCAGTCCCTAGGTCTGGTCAGCTCCGGGGCCTTCGCCCCCCTCACCAAGGCCCAGGGAGAGGGGCTTTGTCAGGGCTTGCAGGGTAAGCAGGCTTCCTTCACTGTGGTGGGGTATGATCATGATGGAGAGCTCAGGCTGTCTGGTGGGGACGGTGTGTCAGCTGTGGTGGTGGCGTCCGATGGTAACCTGCTAAACGCTGAGGTGACTGACCATCAGAATGGGTTGTACACGGTCAGCTACCTGCCCAAGGTAGAAGGAGAACATCTGGTGTCAGTCCTTATCTGCAACCAGCACATCGAAGGCAGCCCCTTTAAAGTGCTGGTCAAGTCTGGCCGTAGCTATGGAGGTATCCCCTTGCCGGTGGCCTCGTTCGGCAGGGAGGGGGACGGAGATGGGCAGCTGTGTCGCCCCTGGGGGGTGTGTGTGGACAAAGAGGGCTACATAATCGTAGCTGACCGAAGCAACAACAGGGTGCAGATCTTCAAGCCGTGCGGTTCCTTCCACCACAAGTTTGGTACGCTGGGCTCCAGACCAGGCCAGTTGGACCGACCAGCTGGGGTGGCCTGCGACAGCCAGAGGAGAATCATCGTCGCCGACAAGGATAACCACCGCATCCAGATCTTCACCTTTGAAGGCCGGTTCCTCCTCAAGTTCGGGGAGAAGGGAACCAAGACCGGTCAGTTCAGCTACCCCTGGGACGTGGCGGTCAGCTCGGAGGGAAAGATCCTCGTCTCAGACACCCGGAACCACCGCATCCAGCTCTTCAGGCAGGACGGCACCTTCCTCAACAAGTACGGCTTTGAGGGGGCTCTATGGAAACACTTGGACTCCCCCAGAGGCGTGGCCTTCACTCAGGAGGACCACCTGGTGGTGACAGACTTCAACAACCACCGTCTGCTGATCATCCGGTCGGACTGCCAGTCAGCCCGCTTCCTGGGATCAGAGGGAACTGGTAACGGTCAGTTCCTGCGGCCGCAGGGCGTAGCAGTGGACCAGGAGGACCGCATCGTGGTGGCTGACTCCCGGAACCACCGGATCCAGGTGTTTCAAACCAACGGTAATTTCTTATGCAAGTTGGGGACTCAGGGTAGCAGCTTTGGACAGATGGATCGCCCATCGGGTATAGCTGTTACTCCTGACGGAAGGATTGTTGCCGTGGACTTTGGAAACAACCGAATCATTATGTTCTAGGCTAGGCAGTTTGTCTGCTGGTTTGCAAAGAAAGAAACATTGAAGAGGAGATTTTGAAACACACCCAGCAGATGTAAATGTCTTTGTCAGCAAATGGAGACGGTAATATTGAAACTTGACCTTTTCTCTCAGCTTTACCTCTATTTTGAAAGAGCAAATCAAAGCAGTACATGAACCAATGCCAACAAGGGGTTATTGTCATAAGCTGACATTTTGAACCCTATAGTAGGCCTTCAGTGACAGTATCTGGCTCGATAGTTGTCTTTGCTCCTGATGTGTGTGTCAAAATCTCTGATTTTCTCAGGGAATTTCTTGCATTCTTGAAATGTTTCCACTGCATCATACCTACCTCATGTAGCTGTGTATGAATGTACTCCTTTATTATTTGATGCAGAGATTTTGCCAGTGGAGTTTTGATAAAGTAACTACCTCAATGCAAGAGAAAAGTATAGTTAACAAGAAGCAACATTTGGTTGATATTTGCACAGAAAGCGCTCACACATTTTCTCTAATTGTTACTGTTGACATAAAGCGTGTGAAATCCCAGAATGTAGCTGAGAACAATGTATTTCCTGTGTTACATACATGTGGAAACGTGGAGTCAGACAttttttataaactcagcaactgttatttttccattttgtttttaaatatgcCTCCATACCTCTGTAAAACCTTTTTTACCTCATGTCACAACCACATAGTACCTCAGAACTCCAGTGTCCTCAGGTCAATAGTatgctgagtcccaaatggcaccctattccctaaatagtgcactacttttgaccagggcccatagggcactggTGCACTAAATAGCGAATAGGTTGTAATCTGAGACTCGTCCTGTAAAATGGATTCTCTCCACAAAATGGCTGCTGCCAGTTTGCTATAGGCAGGTTGAATATTTGATATCAGTGACCATTGTCAGTTCAGTCAGTCGTGTGATTTCAGCTTTAAGGGAAAAAACATTTAACAAGGAATTGACCATCTTGAATTGGGTGAATCATCAGAATTGTTATTTTCAGGGCATCTATGAAGAATTGTGACTTGAAACTACTGGCAATCATCATTGTTGTTAGATTAATTAATACATGCCAGGATTAATATATCCTAAGGCAACTAGTGCATTCGGCCACAACATAGTGAAGATTAGACACATTGGTGTGGGTTAACTTGGATTTAATCTCAACCGTGTCTGAACCCGAGTCTAAATCTATTTACTGATATCCATTTAGAAATCATTGAAATCTGTGTAGACTAACTTTCCTAAGAGTAGAGGGGTCTAAGAGTAGAGGGGTCTAAGAGTAGAGGGGTCTAAGAGTAGTGAAGTTTCATCCTGATATTTTTTGAAGAACAACCTTTCTGCACATGTTTGGTGGTTTAGATTGGCACCCTAATGACGCTACCATGTTCCTTTCTTTGTGACTGTTGTTTGAAAAGTCTATCGTTGCTTCTGGGCCTTGACTATGTTCCCTCAAAGAAAGTCATCCGTTTAGCTTTTTTTCCTTCAAAATAGAATGCGTCAATCATGGGAAACCGCAAGAATATTGTTTTATCCTGGTGgcaaataaaataattttaaaaagtaaaA
>TU249887
gcagacatttttaTCCCAAGAGACTTAGTCATGCTTGTATTCACTGTCCCTACAGTTAAAGGCCTGTCTGCTGATTAAGCATTTTGGTAGCAGATCTTAACACAGTCTTAACTTAACGCTCTGAGCTTTAGTTCCAACCCCTACATCCACCAGAGGTGCCTCTATAGGGGGACTTCATGATGAGGACCCACTACTGTCTGGAAAACAGCTGCTGTGTTGGCCTGGGGTCAACAGCCTCTCTCCAGCAGTGGTACTGGAGCCAGTCTGAGCTGAGCATTGAGAAAGCACAGGCCGTTGCTGAGCAGGTGGAACTGAAGGCCATGGTGGTCCAGTCAGAGGTCAAAGCCATCACACAGCGTTATAAGAAGGCCCTGGAGGAACGAGAGTGTGAACTACTGTGGAAAGTAAGTTGGTTTTCTGCTAAGTAG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0072089 stem cell proliferation biological_process
GO:2000177 regulation of neural precursor cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0060964 regulation of gene silencing by miRNA biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0010586 miRNA metabolic process biological_process
GO:0000932 P-body cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966268.1 False 5157 mRNA 0.47 4 4535483 4553394
TU249887 True 428 TUCP 0.49 2 4538662 4540441

Neighbor

gene id symbol gene type direction distance location
LOC118944827 cck-l coding downstream 78552 4453491 ~ 4456931 (-)
LOC110505077 ulk4 coding downstream 181357 4135306 ~ 4354126 (-)
LOC110506736 LOC106584706 coding downstream 496323 4029092 ~ 4039160 (-)
LOC110506742 LOC106584706 coding downstream 537364 3993014 ~ 3998119 (-)
LOC110507329 LOC106606059 coding downstream 809788 3719700 ~ 3725695 (-)
LOC110507551 LOC106606051 coding upstream 2291 4555685 ~ 4563316 (-)
LOC118944831 NA coding upstream 13623 4567017 ~ 4595235 (-)
LOC118944839 LOC106573494 coding upstream 81538 4634932 ~ 4648920 (-)
LOC110507598 snrk coding upstream 151145 4704539 ~ 4763137 (-)
LOC110507662 NA coding upstream 204153 4757547 ~ 4758783 (-)
G219085 NA non-coding downstream 20826 4514354 ~ 4514657 (-)
G218083 NA non-coding downstream 42743 4492501 ~ 4492740 (-)
G218076 NA non-coding downstream 83857 4450972 ~ 4451626 (-)
G218075 LOC106605488 non-coding downstream 84580 4447883 ~ 4450903 (-)
G218022 NA non-coding downstream 193554 4341577 ~ 4341929 (-)
G219109 NA non-coding upstream 16027 4569421 ~ 4569831 (-)
G219153 NA non-coding upstream 115363 4668757 ~ 4669344 (-)
G219144 NA non-coding upstream 140580 4693974 ~ 4697023 (-)
G219201 NA non-coding upstream 215768 4769162 ~ 4770253 (-)
G218073 LOC106605488 other downstream 95046 4439096 ~ 4440437 (-)
G217459 NA other downstream 846179 3686402 ~ 3689304 (-)
G217261 NA other downstream 1196903 3338186 ~ 3338580 (-)
G216902 LOC106606079 other downstream 1475739 3046005 ~ 3059744 (-)
G216811 NA other downstream 1797016 2736861 ~ 2738467 (-)
G219200 NA other upstream 216956 4770350 ~ 4772051 (-)
G219290 LOC106593286 other upstream 454690 5008084 ~ 5009406 (-)
G219500 NA other upstream 1134331 5687725 ~ 5688291 (-)
G219591 NA other upstream 1194764 5748158 ~ 5748714 (-)

Expression


Co-expression Network