Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118944829 |
| gene name | LOC106606066 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 4535483 ~ 4553394 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0072089 | stem cell proliferation | biological_process |
| GO:2000177 | regulation of neural precursor cell proliferation | biological_process |
| GO:0035278 | miRNA mediated inhibition of translation | biological_process |
| GO:0000082 | G1/S transition of mitotic cell cycle | biological_process |
| GO:0010172 | embryonic body morphogenesis | biological_process |
| GO:0060964 | regulation of gene silencing by miRNA | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0021915 | neural tube development | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0010586 | miRNA metabolic process | biological_process |
| GO:0000932 | P-body | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0035198 | miRNA binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036966268.1 | False | 5157 | mRNA | 0.47 | 4 | 4535483 | 4553394 |
| TU249887 | True | 428 | TUCP | 0.49 | 2 | 4538662 | 4540441 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944827 | cck-l | coding | downstream | 78552 | 4453491 ~ 4456931 (-) |
| LOC110505077 | ulk4 | coding | downstream | 181357 | 4135306 ~ 4354126 (-) |
| LOC110506736 | LOC106584706 | coding | downstream | 496323 | 4029092 ~ 4039160 (-) |
| LOC110506742 | LOC106584706 | coding | downstream | 537364 | 3993014 ~ 3998119 (-) |
| LOC110507329 | LOC106606059 | coding | downstream | 809788 | 3719700 ~ 3725695 (-) |
| LOC110507551 | LOC106606051 | coding | upstream | 2291 | 4555685 ~ 4563316 (-) |
| LOC118944831 | NA | coding | upstream | 13623 | 4567017 ~ 4595235 (-) |
| LOC118944839 | LOC106573494 | coding | upstream | 81538 | 4634932 ~ 4648920 (-) |
| LOC110507598 | snrk | coding | upstream | 151145 | 4704539 ~ 4763137 (-) |
| LOC110507662 | NA | coding | upstream | 204153 | 4757547 ~ 4758783 (-) |
| G219085 | NA | non-coding | downstream | 20826 | 4514354 ~ 4514657 (-) |
| G218083 | NA | non-coding | downstream | 42743 | 4492501 ~ 4492740 (-) |
| G218076 | NA | non-coding | downstream | 83857 | 4450972 ~ 4451626 (-) |
| G218075 | LOC106605488 | non-coding | downstream | 84580 | 4447883 ~ 4450903 (-) |
| G218022 | NA | non-coding | downstream | 193554 | 4341577 ~ 4341929 (-) |
| G219109 | NA | non-coding | upstream | 16027 | 4569421 ~ 4569831 (-) |
| G219153 | NA | non-coding | upstream | 115363 | 4668757 ~ 4669344 (-) |
| G219144 | NA | non-coding | upstream | 140580 | 4693974 ~ 4697023 (-) |
| G219201 | NA | non-coding | upstream | 215768 | 4769162 ~ 4770253 (-) |
| G218073 | LOC106605488 | other | downstream | 95046 | 4439096 ~ 4440437 (-) |
| G217459 | NA | other | downstream | 846179 | 3686402 ~ 3689304 (-) |
| G217261 | NA | other | downstream | 1196903 | 3338186 ~ 3338580 (-) |
| G216902 | LOC106606079 | other | downstream | 1475739 | 3046005 ~ 3059744 (-) |
| G216811 | NA | other | downstream | 1797016 | 2736861 ~ 2738467 (-) |
| G219200 | NA | other | upstream | 216956 | 4770350 ~ 4772051 (-) |
| G219290 | LOC106593286 | other | upstream | 454690 | 5008084 ~ 5009406 (-) |
| G219500 | NA | other | upstream | 1134331 | 5687725 ~ 5688291 (-) |
| G219591 | NA | other | upstream | 1194764 | 5748158 ~ 5748714 (-) |
