LOC110507598 (snrk)


Basic Information

Item Value
gene id LOC110507598
gene name snrk
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4704539 ~ 4763137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966409.1
agagagtctcaatggtgctgcccatgctgtcacataCCCtacaatggcacagatacaaacaTTAGTCTTCCATCTATCTCTATGCGCCGAACACTTACGGCGCCGCCGCAACAGTTTCTGGGAGGAGAATGATTTCGACGAGAGATGCAATTCAATCCCAGGAACGTTGCAATGCCTTGTTTCACTGATGAGGTTTGGGCATAGGCACCGTGTAAGTGTCATTGGTAATCGCAACAGAGGAGGATACAATTAGCTAATAATAAACTTTATCGGGGGTAGAACGAAGGACATTATTTATCATCCAGTGTACTAGCTAGCTGAAGATTTCGGCTTGATGTTTACTGGAGAGAGAGTGGAAGTGGACATCATGGGCACGAAATTAACATCCAACGTGTTGAAGTAAAGTGGACCCACAAGACTGCTTAAAACCCATCCCCAGCCATGGCAGGCTTCAAACGAGGGTATGATGGCAAGATTGCAGGGCTCTATGACCTGGACAAGACGCTGGGCCGGGGCCACTTCGCCGTGGTCAAACTGGCGCGCCACGTCTTCACGGGGGAGAAGGTGGCGGTCAAGGTCATCGACAAGACCAAGTTGGACACAGTTGCCACGGGTCACCTGTTCCAGGAAGTGCGTTGTATGAAGCTGGTACAGCACCCCAACATTGTCCGGCTCTACGAAGTCATCGACACGCAGACCAAGCTCTACCTGATCCTGGAGCTGGGCGACGGAGGAGACATGTTCGATTACATCATGAAGCACGAGGAGGGCCTCAGCGAGGAGCTGGCCAAGAAGTACTTTGCCCAGATCGTCCATGCCATCTCCTACTGCCACCGGCTGCATGTGGTGCACCGTGACCTCAAGCCGGAGAATGTGGTGTTCTTTGAGAAGCAGGGAGTGGTGAAGCTCACTGACTTTGGCTTCAGCAACAAGTTTCAGCCAGGGAAGAAGCTCACTACTAGCTGTGGCTCGCTGGCCTACTCTGCCCCAGAGATCCTGCTGGGAGATGAGTACGATGCTCCGGCCGTAGaTATCTGGAGTCTTGGTGTGATCCTGTTCATGCTGGTGTGTGGACAGCCCCCCTTCCAGGAGGCCAACGACAGCGAGACCCTCACCATGATCATGGACTGTAAATACACTGTACCCACCCACGTCTCCAACGCCTGCAAAGAtcTGGTAGGCCGGATGCTGCAGCGGGACCCAAAGGGCCGTGCGTCTCTGGAGGAGATAGAGAGCCATGCCTGGCTGCAGGGGGTGGACCCGTCCCCAGCCACCAAGTTCAACACCCCCCTGGTGTCTCATAAGAGCCTGTCTGAGGATGAGCACAACGGGATCATACAGCGCATGGTGCTGGGGGACATCGCAGACCGAGAGCCCATAGTAGAAGCCCTGGAGACCAACAAGTACAACCACATCACTGCCACCTACTTCCTGCTGGCTGAGAGGAtcctgagagagaaacaggagaaggAGGTCCAGACACGCTCCTCCAGCCCCAGCAACATCAAGGCCCAGttcagGCAGTCCTGGCCGACGAAGATTGACATGCATCAGGACATCGAGGACAGTCTGGCAGCCTCCTCCATCTGCCACGCTGGTGGTCCCCAGTCCCCCGCCCGCAGCGCTGAGAGCCTTCTCAACGGACATCGCACCAAAGGCCTGCTGGAGCTCCGCAGGGACGAGAGCAACGCAGGGGCCTCCGGTGCCCCTGCCCCCGTTTCTGGGCCCCCTAGAGCTGGGGCCACGGCCCCcacaccctccacctcctcagCCAAGCAGCGCAGCTGCCTGTTCAGagtggaggaggatgaagaggaggaagaggacccgTCCCCTCTGTCCACACAAGTGATCCTGCGTCGCAAGGCTCCATCTATCACCAACCGGCTGACCTCCAGGAAGAGTGCCCCAGTCCTCAACCAGATCTTTGAGGAGGAGGGTGAGTCAGACGACGACTTCGACATGGACGAGGGCCTGCCACCCAAACTCAGCCGGCTAAAGATGAACATCGCTGCTGCAGCGGCCGGGTCGCCGGGCACCACTCAGAAACGCTATCACCGCCGCAAGAGCCAAGGCCGCGGCTCGTCCTGCTCCAGCTCAGAGACCAGCGACGACGACTCCGAGAGCCACCGCCGGCGTCTGGACAAGGACACAGGCTTCACCTACAGCTGGAACCGCAGGGACAGCAGTGAGGGCCCGCCTGGAAACTCAGGGGGAAATGGTGGAGGGAGCAGTGGAGGGCAGAGTAAACCCCCCGGGGAGGGGGGCAGTCCTcctggagggggaggtggggggagtAATGACAATGGAGGGAGTGGTAGTAGTGGGGGGGGAGGTGGTAAGGGACAGGGTTCCCCCTCAAGTTGTTCTAACGGCAGCAGTAACCACTCGTCTTCAGGCTCAGGGTCCACGCGGAGACACTGTGCCTCCCGCAGCCCCGGGGCAGCAGAGCTGGTGGAGAGCCTGAAGCTCCTGAGCCTGTGTCTCAGCTCCCAGTTACAGCACAGGGGGAGAAGTGGAGGCCCCGGCCTGGCAGGGGGGATGGGCCAGTTCATCATAGACCCTCAGAACCTGTCCAATAGTCTGTCCAGCAGCCTGTCAGCTGGCAGCGTCAAGACACAGGAGAGGTCCTCTTGGAAGATGTGCATCGGCTCCAACGGCAGCTTGGACCTGGAGTTAGACACCATCGCTCTGCCCACCACTGCTGTCAACACTCCACGGTCATACACAGACCAAACGGCAGCAGCACTTAGCGAACTGGCCCTGGCCACCAAGGAGAATAACAAGCTGAACAACCTGAAAAAGAATGTTCTCCAGCTACCTCTGTGTGAAAAGAGCATCTCTGTGAACATCCAGCGCAGCCCTAGAGAAGGGCTCCTGTGCACCTCTCAGGCCAGCTGCTGCCAGGTCATATGACACACACTCCCTGGCGCCCTCTGACACCACTCTGCCAGTCCAATCTGTCCAACCACAGTCACCGCTGTAGCATACGTCTGACCTCAGAACACCTCCCCATCACAACCTGCCTTCTGCTGTTGTCTTAAAAGATGCcacttgttattgtttttgtttgttcaCTAGGACCTATGAGCTGCATGCTGCAGGGGGTTCTTTTGTTTCTGCTACATCACTAGCTCCCCCTGGAATGAGCCGAGGTAACACAACTTAGTTGGGGTGTTGATGGAAACATAAATATGGATGTTGGTTTGATTTTAGATCAACTATATTTTGGGGTACAAAATACCAAACTTTTAACAGTGGGTAAGTAGTAGCACGTGATAGTTAAAGGGTAAGCACTTAAATTTGATTATTCGTCTACTGTCTACTATGTAAAGGGTATgttaggagaggtagaggaggacaggacagagatgCCATACAGCTGGGAGAGAtaagaggacaggacagagataccATACAGCTGGGAGAGATAGGAGGACAGGACAAAGATACCAGTCACCATACAgctgggagagatgggaggacagGACAAAGATACCAGTCACCATACAGCTGGGAGAGATAGGAGGACAGGACAAAGATACCAGTCACCATACAgctgggagagatgggaggacaggacagagataccatacagctgggagagataggaggacaggacagagatatCATACAGCTGGGAGAGataggaggacaggacagagataccagtcaccatacagctgggagaggtagagttggacaggacagagataccagtcaccatacagctgggagaggtagaggagagcagGACAGAGATACCAGTCACCATACAgctgggagaggtagaggaggacaggacagagatactagtCACCATACAGCTGGGAGAGGTAGACGAGAGCAGGACAGAGATACCAGTCACCATACAGCTGGGAGAGGTAGAagagaacaggacagaga
>XM_036966418.1
actactttaaaatggagagagtctcaatggtgctgcccatgctgtcacataCCCtacaatggcacagatacaaacaTTAGTCTTCCATCTATCTCTATGCGCCGAACACTTACGGCGCCGCCGCAACAGTTTCTGGGAGGAGAATGATTTCGACGAGAGATGCAATTCAATCCCAGGAACGTTGCAATGCCTTGTTTCACTGATGAGGTTTGGGCATAGGCACCGTGAAGTGGACATCATGGGCACGAAATTAACATCCAACGTGTTGAAGTAAAGTGGACCCACAAGACTGCTTAAAACCCATCCCCAGCCATGGCAGGCTTCAAACGAGGGTATGATGGCAAGATTGCAGGGCTCTATGACCTGGACAAGACGCTGGGCCGGGGCCACTTCGCCGTGGTCAAACTGGCGCGCCACGTCTTCACGGGGGAGAAGGTGGCGGTCAAGGTCATCGACAAGACCAAGTTGGACACAGTTGCCACGGGTCACCTGTTCCAGGAAGTGCGTTGTATGAAGCTGGTACAGCACCCCAACATTGTCCGGCTCTACGAAGTCATCGACACGCAGACCAAGCTCTACCTGATCCTGGAGCTGGGCGACGGAGGAGACATGTTCGATTACATCATGAAGCACGAGGAGGGCCTCAGCGAGGAGCTGGCCAAGAAGTACTTTGCCCAGATCGTCCATGCCATCTCCTACTGCCACCGGCTGCATGTGGTGCACCGTGACCTCAAGCCGGAGAATGTGGTGTTCTTTGAGAAGCAGGGAGTGGTGAAGCTCACTGACTTTGGCTTCAGCAACAAGTTTCAGCCAGGGAAGAAGCTCACTACTAGCTGTGGCTCGCTGGCCTACTCTGCCCCAGAGATCCTGCTGGGAGATGAGTACGATGCTCCGGCCGTAGaTATCTGGAGTCTTGGTGTGATCCTGTTCATGCTGGTGTGTGGACAGCCCCCCTTCCAGGAGGCCAACGACAGCGAGACCCTCACCATGATCATGGACTGTAAATACACTGTACCCACCCACGTCTCCAACGCCTGCAAAGAtcTGGTAGGCCGGATGCTGCAGCGGGACCCAAAGGGCCGTGCGTCTCTGGAGGAGATAGAGAGCCATGCCTGGCTGCAGGGGGTGGACCCGTCCCCAGCCACCAAGTTCAACACCCCCCTGGTGTCTCATAAGAGCCTGTCTGAGGATGAGCACAACGGGATCATACAGCGCATGGTGCTGGGGGACATCGCAGACCGAGAGCCCATAGTAGAAGCCCTGGAGACCAACAAGTACAACCACATCACTGCCACCTACTTCCTGCTGGCTGAGAGGAtcctgagagagaaacaggagaaggAGGTCCAGACACGCTCCTCCAGCCCCAGCAACATCAAGGCCCAGttcagGCAGTCCTGGCCGACGAAGATTGACATGCATCAGGACATCGAGGACAGTCTGGCAGCCTCCTCCATCTGCCACGCTGGTGGTCCCCAGTCCCCCGCCCGCAGCGCTGAGAGCCTTCTCAACGGACATCGCACCAAAGGCCTGCTGGAGCTCCGCAGGGACGAGAGCAACGCAGGGGCCTCCGGTGCCCCTGCCCCCGTTTCTGGGCCCCCTAGAGCTGGGGCCACGGCCCCcacaccctccacctcctcagCCAAGCAGCGCAGCTGCCTGTTCAGagtggaggaggatgaagaggaggaagaggacccgTCCCCTCTGTCCACACAAGTGATCCTGCGTCGCAAGGCTCCATCTATCACCAACCGGCTGACCTCCAGGAAGAGTGCCCCAGTCCTCAACCAGATCTTTGAGGAGGAGGGTGAGTCAGACGACGACTTCGACATGGACGAGGGCCTGCCACCCAAACTCAGCCGGCTAAAGATGAACATCGCTGCTGCAGCGGCCGGGTCGCCGGGCACCACTCAGAAACGCTATCACCGCCGCAAGAGCCAAGGCCGCGGCTCGTCCTGCTCCAGCTCAGAGACCAGCGACGACGACTCCGAGAGCCACCGCCGGCGTCTGGACAAGGACACAGGCTTCACCTACAGCTGGAACCGCAGGGACAGCAGTGAGGGCCCGCCTGGAAACTCAGGGGGAAATGGTGGAGGGAGCAGTGGAGGGCAGAGTAAACCCCCCGGGGAGGGGGGCAGTCCTcctggagggggaggtggggggagtAATGACAATGGAGGGAGTGGTAGTAGTGGGGGGGGAGGTGGTAAGGGACAGGGTTCCCCCTCAAGTTGTTCTAACGGCAGCAGTAACCACTCGTCTTCAGGCTCAGGGTCCACGCGGAGACACTGTGCCTCCCGCAGCCCCGGGGCAGCAGAGCTGGTGGAGAGCCTGAAGCTCCTGAGCCTGTGTCTCAGCTCCCAGTTACAGCACAGGGGGAGAAGTGGAGGCCCCGGCCTGGCAGGGGGGATGGGCCAGTTCATCATAGACCCTCAGAACCTGTCCAATAGTCTGTCCAGCAGCCTGTCAGCTGGCAGCGTCAAGACACAGGAGAGGTCCTCTTGGAAGATGTGCATCGGCTCCAACGGCAGCTTGGACCTGGAGTTAGACACCATCGCTCTGCCCACCACTGCTGTCAACACTCCACGGTCATACACAGACCAAACGGCAGCAGCACTTAGCGAACTGGCCCTGGCCACCAAGGAGAATAACAAGCTGAACAACCTGAAAAAGAATGTTCTCCAGCTACCTCTGTGTGAAAAGAGCATCTCTGTGAACATCCAGCGCAGCCCTAGAGAAGGGCTCCTGTGCACCTCTCAGGCCAGCTGCTGCCAGGTCATATGACACACACTCCCTGGCGCCCTCTGACACCACTCTGCCAGTCCAATCTGTCCAACCACAGTCACCGCTGTAGCATACGTCTGACCTCAGAACACCTCCCCATCACAACCTGCCTTCTGCTGTTGTCTTAAAAGATGCcacttgttattgtttttgtttgttcaCTAGGACCTATGAGCTGCATGCTGCAGGGGGTTCTTTTGTTTCTGCTACATCACTAGCTCCCCCTGGAATGAGCCGAGGTAACACAACTTAGTTGGGGTGTTGATGGAAACATAAATATGGATGTTGGTTTGATTTTAGATCAACTATATTTTGGGGTACAAAATACCAAACTTTTAACAGTGGGTAAGTAGTAGCACGTGATAGTTAAAGGGTAAGCACTTAAATTTGATTATTCGTCTACTGTCTACTATGTAAAGGGTATgttaggagaggtagaggaggacaggacagagatgCCATACAGCTGGGAGAGAtaagaggacaggacagagataccATACAGCTGGGAGAGATAGGAGGACAGGACAAAGATACCAGTCACCATACAgctgggagagatgggaggacagGACAAAGATACCAGTCACCATACAGCTGGGAGAGATAGGAGGACAGGACAAAGATACCAGTCACCATACAgctgggagagatgggaggacaggacagagataccatacagctgggagagataggaggacaggacagagatatCATACAGCTGGGAGAGataggaggacaggacagagataccagtcaccatacagctgggagaggtagagttggacaggacagagataccagtcaccatacagctgggagaggtagaggagagcagGACAGAGATACCAGTCACCATACAgctgggagaggtagaggaggacaggacagagatactagtCACCATACAGCTGGGAGAGGTAGACGAGAGCAGGACAGAGATACCAGTCACCATACAGCTGGGAGAGGTAGAagagaacaggacagaga

Function

symbol description
snrk Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in protein phosphorylation. Predicted to be located in nucleus.

NR:

description
PREDICTED: SNF-related serine/threonine-protein kinase

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08802 SNRK; SNF related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966409.1 False 3906 mRNA 0.55 6 4704539 4763122
XM_036966418.1 True 3777 mRNA 0.56 6 4704539 4763137

Neighbor

gene id symbol gene type direction distance location
LOC118944839 LOC106573494 coding downstream 55619 4634932 ~ 4648920 (-)
LOC118944831 NA coding downstream 109326 4567017 ~ 4595235 (-)
LOC110507551 LOC106606051 coding downstream 141223 4555685 ~ 4563316 (-)
LOC118944829 LOC106606066 coding downstream 151145 4535483 ~ 4553394 (-)
LOC118944827 cck-l coding downstream 247608 4453491 ~ 4456931 (-)
plekho1b LOC106606096 coding upstream 89566 4852703 ~ 4892517 (-)
LOC110518085 LOC106593045 coding upstream 174292 4937429 ~ 4943500 (-)
LOC118944848 NA coding upstream 244194 5006952 ~ 5007885 (-)
LOC110507711 LOC106574107 coding upstream 279759 5042896 ~ 5054330 (-)
LOC110534068 LOC106574842 coding upstream 467203 5230340 ~ 5312338 (-)
G219144 NA non-coding downstream 7516 4693974 ~ 4697023 (-)
G219153 NA non-coding downstream 35195 4668757 ~ 4669344 (-)
G219109 NA non-coding downstream 134708 4569421 ~ 4569831 (-)
G219085 NA non-coding downstream 189882 4514354 ~ 4514657 (-)
G219201 NA non-coding upstream 6025 4769162 ~ 4770253 (-)
G219208 NA non-coding upstream 15870 4779007 ~ 4837111 (-)
G219236 NA non-coding upstream 135486 4898623 ~ 4898848 (-)
G219273 LOC106606069 non-coding upstream 208266 4971403 ~ 4974116 (-)
G218073 LOC106605488 other downstream 264102 4439096 ~ 4440437 (-)
G217459 NA other downstream 1015235 3686402 ~ 3689304 (-)
G217261 NA other downstream 1365959 3338186 ~ 3338580 (-)
G219200 NA other upstream 7213 4770350 ~ 4772051 (-)
G219290 LOC106593286 other upstream 244947 5008084 ~ 5009406 (-)
G219500 NA other upstream 924588 5687725 ~ 5688291 (-)
G219591 NA other upstream 985021 5748158 ~ 5748714 (-)
G219592 NA other upstream 988587 5751724 ~ 5752094 (-)

Expression


Co-expression Network