LOC110518085 (LOC106593045)


Basic Information

Item Value
gene id LOC110518085
gene name LOC106593045
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4937429 ~ 4943500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966536.1
atgactaggtgtgtccaaacttttgactggtactgtatttggaaatgtgtatatatatattttattttattctctTAGGTTATAGGTTTAGGCTATTGTAACGCTGAATTGACCAGTAATATTACTGTGAGGTAGCAAACATAACCCATCAGTGCAGCACATATGGCATGCTATCTCCCTCTGGTCCCTATACATTTGATAAAGGACATGTGTTATGCAGCAATAGGTCTTACCTCAAATGGCCTAACCAAACAACTATCACAGCAGCCTATAAACATACAGATATTAGCCCGACATTGTGATGTCAAAGTGTATCATTGTAGTCAGCAGATTAGCCTAAATGGCATGACATGGATATAGTCTTTATGCCAGATCATGTTCTAGGAATTGTATTCTAGTCAAATGCATTGTTATACCATTCTGCCTATGCATTTGCATTGGTATGTTTACATCTGTTTGCAGCGTTTTCATTCGCTGGACTGGGCTCACTCAGTTCACACCTAGAGATgtaacataacactttgtattttgACACCACTGCTGCTCTCGTATTGCCCGTGATACATTAGAGAATACGATTGTAATCTCTTCGTAATCTGAAGACAGACGCGAAATCCCTCTATTTAAATTGCTTTAAACCTATTAATAGCCTCGCTCTCAGATGAGAGCATCATAGCCGACAAAACATCGTAATATTCCTCGATTAGAACGAGGTGACTCCCAAGGCGAACGGTATTCGGTCCGTCCACCTATGGTCTGGCAGGTTTTTGACCAAGGCTACGGATAAAATGTGGGATGAAGTTGCTCGGTCTGCGCCGGTTAAGTATGGCGCTGTCATAGCGGTCACAGTGATCTGCGTTGTTCTGTTGAGAAAATGGATTGCTGGGGGTGTGTGTCAATCTTCAGTCCAATTACATGGCAAGACGGTGTTGGTCACCGGTGCCAACACCGGCATTGGCAAGGAAACGTGCCATGACATGGCACGTAGAGGGGCGCGGGTGGTGATGGCATGCCGGGACCTGACACGGGCTGCGAGGGCGGCGGATGAGATTCGTCAAGCCACGGGGAACAGCAACATCGTAGTGCGGCACCTGGACCTGGCCTCTATGTACTCTGTCAGAGAGTTGGCCAAAGAGTTCATTGCCAGTGAGGATCGCCTAGATATACTCATCAACAACGCTGGTGTGATGATGTGCCCTAAGTGGCTAACAGAGGACGGCTTCGAGACACAACTGGCTGTCAATCACCTCGGACACTTTCTACTGACCAATCTCCTTCTGGGGAAGCTCAAGAGCTCCGCCCCTAGCCGTGTGGTCAATGTGTCTAGCATTGCACACAAAGGGGGTAAGATCCAGTTTGATGATCTTTTCTTTGCCAAGAGGCCGTACAACTCCCTGGTCAGTTACAGGCAGAGCAAGCTGGCCAACGTGCTATTCTCCAGAGAGCTGGCCAGAAGGTTGAAAGGTACGGGGGTGACGTCCTACAGCCTGCATCCCGGGGTGATCAGGACAGAGCTGACTCGTCACGTGGAGACCTGGTTCCCCATGCTGAGGGCCATCCTGTCAGCCCCCTCCATGCTCCTCATGAAGACCCCCACCCAGGGTGCCCAGACCTCCATCTACTGTGCTGTCACCCCAGGACTGGAGAACAAGTCTGGCAGCTACTTCAGtGACTGTGCCATGACGGAGACCGCCCCAGGGGGGAGGGATGATGCGGTGGCCAAGAGGCTTTGGAAGGAGAGTGCCCGTCTGGTGGGTTACAAAGAAAAAGACTGAACAACCCCCTCCATCTGAAAACCATAGAGAAAGACTGTACAACCCCCTCCATCTGAAAACTATAGAGAAAGACTGAACAACCCCCTCCATCTGAAAACCATAGAAAAAGACTGAACAACCCCCTCCATCTGAAAACCATAGAGAAAGACTGTACAACCCCCTCCACCTTCAAACTATAGAGAAGGACTGGACAACCCCCTCCACCTTCAAACTATAGGGAAAGACTGTACAACCCCCTCCACCTGAAAACCATAGAGAAAGACTGTACAACCCCCGCCATCTGAAAACTATAGTGAAAAACCGAACAATCCCCTCCACCTGAAAACCATAGAGAAAAACTGAACCCCCTCCATCTGAAAACTATAGAGAAAGACTGTACAACCCCCTCCATCTGAAAACCACACAGAAAGACTGAACAACCCCCTCCACCTGCAAACTATAGAGAAAGACTGAGCAACCCCCTCCACTTGCAAACTATAGAGAAAGACTGTACAACCCCCTCCACCTTCAAACCATAGAGAAAGACTGTACAACCCCCTCCACCTGCAAACCATAGAGAAAGACTGAACAACCCCCTCCATCTGAAAACTACAGAGAAAGACTGTACAACCCCCTCCACCTGAAAATGGTAGAGAAACACTGAACAACCCCCTCCACCTTCAAACTATAGAGAAAGACTGAACAACCCCCTCCACCTGCAAACTATAGAGAAAGACTGTACAACCCCCTCCACCTTCAAACCATAGAGAAAGACTGAACAACCCCCTCCACCTGCAAACCATAGAGAAAGACTGAACAACCCCCTCCATCTTCAAACTATAGAGAAAGACTGAACAACCCCCTACATCTGAAAACCGGGAACTCATGAACTAAGGACAGCCCCAAACCTCTCTGACAAACAGCATCAACAGATTGGACGACTGGTACCAAGGAATCCTCAAGCCTCTCTTCTCTGACCTCTCAATATAAAATTACCTGTAAGGAGTCTTCAAAAAGACATGCATGGGTGATGTGTAGTTACCAGGTTGGGGCGTCCATGCTTACCTTGGAGATTGCAGACTGAAAGACTAACAGACCTGTAGGAACTCAACTCAGGACAAAAAGTCCTTTCACCTCACTATGCTGGAGATCAGATATCCAACAAATTATTTGGAGCATCCATCGCCAGTCATTCTTGTAGAATTCTGACCCTTGTTAACAGGGGCGTCATGTACCCCAAAAATCTGAGGTTTAACAGGGGCGTCATGTACCCCAAAAATCTGAGGTTTAACAGGGGCGTCATGTACCCCAAAAATCTGAGGTTTAACAGGGGCGTCATGTACCCCAAAAATCTGAGGTTTAACAGGGGCGTCATGTACCCCAAAAATCTGAGCTTTAACAGGGGCGTCATGTACCCCAAAAATCTGAGGTTTAACAGGGGCGTCATGTACCCCAAAAATCTGAATGTGCACAAAGTATGTGAGGATGGCTGGGGGAGTGGTTGGATAATTTAgcaattttcaaacacctgaaaaagcattttcctgcaatctagagccatgatcattatgcttaattttgtgtgaaaaatatgtatatttttctgcatatTTAAGCAAACTTTTTGAACTGTCTGTATCCACCTGATTGGTGGTTCTTTTTTTCAATAAACTAAATATTCATCTCTACATCTCTGCTAAAAATCTGGGTAAaggattgaaaggaatgtgagtcttattcagtacattgaATAATTCCTcacttttctaaagtctaccaaccttgccagcacacatgccagctaagatagttagacaagctagctactctaacttgttTGATAGCCTACTTtatagctagttatgaggttgggagattgggaaccaatctgggctagctaaagccaacttcataaaattgctaggaggctatttatttttttagttgTATAAACAGGACACATCTGAGGGGGCACGTTCCCCTGCGCCCCCTATGGGCATTATGCCTCTGCCTGATAATATGAATGTCAGTTGAGAGTGTTGTACTTGATAGCTTAGTACATTGGGATGAATATTACACTGGTGATCATGCATTTACTGCAGTTTAACACTTTAGAGTGTCATGTTTATGAAATAAGCAGGTAAATAGTATATTTCATCATTAGAGATTGCAGGTAATCATTGCCAAGTATTCACCTGGTTATTTCCTGAGGGCACTGTAAAAGCATGTTTATACTAAATGTTCTCTGTAAAGAGTAGTTGTCTTTTGGAATTCACTCCTGAAATGGGAAACTACTGATGGTCATTCTGTTTTTCAAGGGAGGATCATCTTCAAGGTAATTTTGCAAAGTAGCAACAATGACTATCTCAAATAAAATGTAAGCTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966536.1 True 4141 mRNA 0.45 7 4937429 4943500

Neighbor

gene id symbol gene type direction distance location
plekho1b LOC106606096 coding downstream 44912 4852703 ~ 4892517 (-)
LOC110507598 snrk coding downstream 174292 4704539 ~ 4763137 (-)
LOC110507662 NA coding downstream 178646 4757547 ~ 4758783 (-)
LOC118944839 LOC106573494 coding downstream 288509 4634932 ~ 4648920 (-)
LOC118944831 NA coding downstream 342216 4567017 ~ 4595235 (-)
LOC118944848 NA coding upstream 63831 5006952 ~ 5007885 (-)
LOC110507711 LOC106574107 coding upstream 99396 5042896 ~ 5054330 (-)
LOC110534068 LOC106574842 coding upstream 286840 5230340 ~ 5312338 (-)
LOC110535324 LOC106605869 coding upstream 380624 5324124 ~ 5333624 (-)
LOC110515205 ci023 coding upstream 390373 5333873 ~ 5335574 (-)
G219236 NA non-coding downstream 38581 4898623 ~ 4898848 (-)
G219208 NA non-coding downstream 100318 4779007 ~ 4837111 (-)
G219201 NA non-coding downstream 167176 4769162 ~ 4770253 (-)
G219144 NA non-coding downstream 240406 4693974 ~ 4697023 (-)
G219273 LOC106606069 non-coding upstream 27903 4971403 ~ 4974116 (-)
G219279 NA non-coding upstream 40649 4984149 ~ 4984514 (-)
G219283 NA non-coding upstream 45992 4989492 ~ 4990146 (-)
G219284 NA non-coding upstream 47739 4991239 ~ 4991523 (-)
G219286 NA non-coding upstream 49419 4992919 ~ 4993607 (-)
G219200 NA other downstream 165378 4770350 ~ 4772051 (-)
LOC118944829 LOC106606066 other downstream 396988 4535483 ~ 4553394 (-)
G218073 LOC106605488 other downstream 496992 4439096 ~ 4440437 (-)
G217459 NA other downstream 1248125 3686402 ~ 3689304 (-)
G219290 LOC106593286 other upstream 64584 5008084 ~ 5009406 (-)
G219500 NA other upstream 744225 5687725 ~ 5688291 (-)
G219591 NA other upstream 804658 5748158 ~ 5748714 (-)
G219592 NA other upstream 808224 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 1386102 6329602 ~ 6349701 (-)

Expression


Co-expression Network