XLOC_021564 (zgc:173570)


Basic Information

Item Value
gene id XLOC_021564
gene name zgc:173570
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16823385 ~ 16854489 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042810
ATGTCCAAAGTTAAGTGTGGacagaaatcacagggaatcacaaaaaaatcacaaaaccTCCACTGCCAGGTCCcgggttgtgagtttgttgccTTGTATTTCAGGAGTCAAGACAAGACAGTAGGTTATTTGAGtgaaaattttggcaggTGTTATAAAgagaggctt
>TCONS_00042811
AGTACTTTCGGTTTGGGATATAGGTAAACAGGTGATTTTAAGGACTAAATTGTGATTCAGTGCGTTTTTAGAATCCTGCAATGTGTGACTAATAGGAGCCCTAAAGAAAGACTATATACAGTACAACGGATCAAATCAGCTGGTAGTGAACCGTCAAAACGCCAGACATACAGTAATGTTAGCTCAGTTTCCTCTCAGCTTGCAGCCGCATTGAGAGCTATCGCTGGTCGAAAAGGCGATATTTAGCACATAACTAATCTGAaggtagtatttttattattattttttttcactcgGATCAACTCACGGTTTCATCATCGTCAGCATATAAGACGCAACTTTCGTGTTTTCACGAACAAAACTGTCTTATGAACGACAaatgaagtgaaaaaaaaacaagaatgggTCAGTCGACAAGCGGACAACCGCATGTTTCTTCTATCTATGAGAGATCAGAGTTTCGGTCCAGATCAGACGCATTCTCAGGTGTGATGCCAGATGTTCCTCTAGCTGTGGTTGAGGAGATCTTGCTGTACCTGCCCGCTcatcaggtggtgcgagtgtgtCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGTTGCACACTGGAGAGAGCGCTGTCGGAGAGAGGGGATTCAGCCCTGTGATGCTTCCAGGCCGCCAGAAGACTGGTGTCAGTTTTACTTTATAACTAAAAAACGACGGAACCTGATCAAGAATCCCAAAGCTGAAGATGAGTTCAATGATTGGATGATTGTACAGAATGGTGGTGATCTGTGGACGATTGAAGATAATGGTGTCGAAATTCCAAAGCACACAGTGTCTAAATACTTTGTCACCTCTCACTGGTTATGTTTAAAGCAACAGCTGATTGATTTGCAGAAAGAAGGCTACAGTGCTGCTTTCATGGATCATCTGCAACCTCATATCAAAATCTCAGACTGGTATGGCCCACGCATTGATTGTGGGTGTGAGTATCAGATCTGTGTGGAGTTGCTTGATCAGAAGAAGAAACCCATCAGTACCTTTGAACCCGAACCAGTTATCTTTCCACAGTGGAGTGACTGGCAGTGGTGTGAAaTGATTCATGTCTTCAAGGATTATGGACCTGGTGTTCGGTTTATCCGTTTCACTCACGGAGGGAAGGATACTCAGTTCTGGGCAGGTCATTATGGAATAAGAGTAACTAACAGTAGTGTGGAGATCTGCCCAGCTGCAGAGAGAGAGTCATTGTCTGTTTGAGTATTTCCTCTGTTATAAGAAACACTATGAAATAATGGACctgcttaaattattatttttattattattatttaatattattgacCATTACACTGTTATAAAGTAATCTAAGCATGCAatgtaaacaatcattttaaaaaagtcttaatCTGTTATACATCTGGCAGCATTGCACTATGCTTCAGTTTACGCCCTCTCTGTGCCTCcgcaaaaacatttaaacagacaTGGGAAGATGTGAGATAGTGGCCAGGTGAAGCAGAAAAGGAAAGAGCAGGTAACAAGAAAGCATCTATATCTCTGTTTACTCTAATGTATAACGTTAATCGTATGttcttatgaaaaataaaaagagttgTTAAAAGA

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0006516 glycoprotein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-15 Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000037645

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042810 False 168 mRNA 0.41 8 16823385 16854489
TCONS_00042811 True 1616 mRNA 0.41 6 16831063 16849515

Neighbor

gene id symbol gene type direction distance location
XLOC_021563 zgc:100832 coding upstream 123 16814968 ~ 16823262 (+)
XLOC_021562 zgc:114081 coding upstream 11658 16807209 ~ 16811727 (+)
XLOC_021561 NA coding upstream 24663 16798100 ~ 16798722 (+)
XLOC_021560 zgc:153722 coding upstream 35155 16774589 ~ 16788230 (+)
XLOC_021559 si:rp71-1k13.6 coding upstream 50106 16760845 ~ 16773279 (+)
XLOC_021565 AL732515.2 coding downstream 4428 16858917 ~ 16859033 (+)
XLOC_021566 zgc:114174 coding downstream 9641 16864130 ~ 16884098 (+)
XLOC_021567 si:dkey-147f3.8 coding downstream 34663 16889152 ~ 16918191 (+)
XLOC_021568 si:dkey-147f3.8 coding downstream 74017 16928506 ~ 16945441 (+)
XLOC_021569 si:dkey-147f3.4 coding downstream 93560 16948049 ~ 16953236 (+)
XLOC_021556 CU041345.1 non-coding upstream 377345 16444961 ~ 16446040 (+)
XLOC_021554 NA non-coding upstream 415959 16406558 ~ 16407426 (+)
XLOC_021553 AL928725.1 non-coding upstream 466156 16356708 ~ 16357229 (+)
XLOC_021552 NA non-coding upstream 543891 16272565 ~ 16279494 (+)
XLOC_021571 BX927275.1 non-coding downstream 291826 17146315 ~ 17211806 (+)
XLOC_021573 NA non-coding downstream 400009 17254498 ~ 17254757 (+)
XLOC_021576 NA non-coding downstream 558036 17412525 ~ 17447163 (+)
XLOC_021578 NA non-coding downstream 618630 17473119 ~ 17477448 (+)

Expression


Co-expression Network