LOC110507709 (LOC106574077)


Basic Information

Item Value
gene id LOC110507709
gene name LOC106574077
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5018589 ~ 5026840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966556.1
TACCAGTTTGTAAACCAATATTTGATACTACACTACCCATAATACTACGTCCCGTCTTTGAACGTCACGTCAGCCCAAGACGAGTCACGCACGACTCTTGGGCATTAACATTTCAAACTTACAGTGCAGTCTTTTTATTCCTGAGACGTGCAGATacagttaacgttagctatatGCAACAAAGACAACTAGAACACTCTAATTTCAGACTGTCTTTACGTAGTGCATCCGATAACCATGgatatatttttaaaaagctgTCGCAATGAACTGAAGGGGAACGCAGAGGGCAGCCCAGGGTTCCATGTGGTCCTGGGGAACGAGGCCTGTGACCTGGACTCCATGGTGTCAGCTCTGGCCTACGCATACTTCCTGTCCAAGacACTTGATTCTGGGAAAGTTCCTCTTCCCGTTCTGAACATTCCCCGGCAAGAGTTCCCGCTGCGCACGGACAATGCCTTCCTGCTGAGAGAGAATGGCCTCTCCCAGGATGACCTGGTGTTCCGGGACGAGGTGGACCTGGGGAGTCTACACCGGGCCGGCCGGCTGGACCTCACATTGGTGGACCACAACGTGCTGCCCAGCTCTGACTGTGATCTAGAAgaggtggtgttggaggtgatCGACCATCACCTCCTGGAGAGGAagccctctccctcctgtcccgtTACCGTGGAGACGGTGGGCTCCTGCTCCACCCTGGTGGCAGAACGGATCATCCAGAAAGCCCCTCAAGTCCTCGACCAACAGGTGGCCCAGCTCTTATATGGCACCATAGTGTTAGACTGTGTGAACATGGCCCCAGAGGCAGGGAAAGTCACCCCTAAAGACAGCCAGTACGCTGGCCTCCTGGAGACTCACTTCCCCAACCTGCCACCAAGGGGCGTCCTCTTCCAGTCCTTGCAGAATGCTAAATTTGACGTGTCAGGTCTTACCACAGAACAGATGCTTCTGAAAGACATGAAGGTGGCATCGGAAGGAGATTTAAAACTGGCAGTCAGTGTGATATATATGACACTGGAGGCTTTTCTACAGAGACAAAGCTTACAGCAAGAGCTCTGTGAGTTCTGCCACAAGCACAGCTACAACCTGGTGGTGGCCATGACGATCTCCTTCAACGATAACAAGGAGCCCTTCAGGCAGCTGGCCGTCTACAGCTCCAGCACCCTCTACAGGGGGGAGATGAGCCAAGCCTTGGAGCAAGCCCGGAGCCCCAGTCTGAGCCTGAGTCCAATGAGCAGCCCTTACTCGGACATCAGGGCTTACCTCCAGGGCAACACGTTGGCCTCCAGGAAGAAGGTGCTGCACATCATCAAGGACTTCCTGAGGGACAGGGAGCGAAGAGAGGTGCATTGTGGGACCCTAGAGGAGAGTTACGAGGTACCACAGCAACGAGCGTGCACTGAGGACGCTGGGATAGAGGAGGACTCCTACTTCCCCCCCACCCCTATGAACAGTCTGGTGGAGGGCTGTCCCCTTGACAACGGACTGCCCAAGATCAGCGCTGAAGCTCTGACGGAGAAGTTCAGCAAGATGGCCAGCGAAGAGGAGAACGCAGGGGGACTCTGATGTCACTCACACTCCTGGTGGTCAGCGGAGCACCCAAGCTCACTAACCTGTATAACAGCTGGATGGCCAGAGTTCTCGCAACAGGATTCAGACCAGTCAGTACAGATTGTTTGTGACTGTGCAGGGTGTTGAGCTCGGCACAACATTGATCCGCTGGGACGAGGACTGGGAGGCACACTGTTCCCAATCCAGAGGAGTAAACAAATCACTGGCAATCATATTGGAGATGATGGAAATGCATTGAAAATATTAGTGACACCCGTGCTTTACGTTGGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCATGCTTTACGTTAGTGACACCCGTGCTTTACGTTGGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTGGTGACACCCGTGCTTTACGTTGGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTATATGGGGGGAGGGAGTTCCTGAGTGGTGtagcggtccaaggcactgcatctcagtgctagaggcgtcactacagaacctggtttgattcctggctgtatcacaactggccgtgattgggagtccattgtcccagcgtcgtccgggttaaggtttggccggggtaggccatcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaataaaaaaaatattagtgACACCGATGCTTTCATCCTTGAATGGGAATAAGACATTTAATTGGGAACTCTGTTAATGGAAAAATACTCCCAGTTATGTTTCCGGGAAATAGATTTTGCTGTAGATTTGAGAAAATAGATCCACTAGATCTAGACTAGTGTGTATATGAACATTTGTGTGATAGATGCCTAAACCAATATGTGGTCTGCTTACTAaggcaacagggatcttgatccaggagggcattgaatgtctctactgtaaccaagaagcttgatcttgacatctagGCACTGTGCCCTATACTAATGTGTATAGGAAGATCTTTGTGATAGATGCCTAAACCAATATGTGGCcccactttatttggatagtccagcTGTAGATGgtcaaactatctgttgataagcaactgcttacTAAGCTTGGGTTAATAGTTAGAGTTGGGGTTGGGGTCAGAGTTAAGTTTAGGGTTTGGTTAAGGTTGGCGTTTAGTACATAGTTAGTTGGAAtgtgatagtctgtagagcatctacaaaTGGACTGTCCAAATGAAGGGTTACTCTGCATGATATGCAGTGTTGATTTGACATAATTGATAAGCAGTTTGACGTTGAAGTAAAGAGTTTGTGTTGAATAGTTATTGCTAGAGATAGCTAGACATTATTCCTTGACTGTTTTATTGATAATAAATCAGTTTTGAATGTTCTTCTGATTCAAAACACCATTATAATACTATCTTCCCCAAATGAAAGATTTTGTATACTGCAAATGTATGTAAACATAATGTATTTAAGAATTATCTGATTATATGCAATTGTATCGCACGAAGATACAGTAACTTCCGTTGGATTGTGTTAAAACACTTGGTACCAATGATATTGCTGATGTCATGTTAATTTGAATATAATACTTTGATCTCTTATCTGAAACTAGGACTCCCAGAACCAAGGTACTTCCAGGCCTGATGTAGTCTAATTAAATGACTGTTTATTTCATTAAATGCTCTAAACTGATGAGAACAGATGAGATGTAGCCATAATCTGCACTGAAAGGTAGAGTAGATTTCAGTCAAGGTTAGACCATTAGCAGATGTTATGAAGGACAATCAAGTGAAAAATGTCAGTTTGACCTTTTTAATCATTTGGAAACCAGCTGACTAAAGTTTTACAGTTAGAAATGTAATGGTTTTCACCTGAAATGTTGAAAAGGATTTAATATTATTAAAGTTTCTTATCCTG
>TU248804
TAACATTTCAAACTTACAGTGCAGTCTTTTTATTCCTGAGACGTGCAGATacagttaacgttagctatatGCAACAAAGACAACTAGAACACTCTAATTTCAGACTGTCTTTACGTAGTGCATCCGATAACCATGgatatatttttaaaaagctgTCGCAATGAACTGAAGGGGAACGCAGAGGGCAGCCCAGGGTTCCATGTGGTCCTGGGGAACGAGGCCTGTGACCTGGACTCCATGGTGTCAGCTCTGGCCTACGCATACTTCCTGTCCAAGacACTTGATTCTGGGAAAGTTCCTCTTCCCGTTCTGAACATTCCCCGGCAAGAGTTCCCGCTGCGCACGGACAATGCCTTCCTGCT
>TU248803
ggcactgcatctcagtgctagaggcgtcactacagaacctggtttgattcctggctgtatcacaactggccgtgattgggagtccattgtcccagcgtcgtccgggttaaggtttggccggggtaggccatcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaataaaaaaaatattagtgACACCGATGCTTTCATCCTTGAATGGGAATAAGACATTTAATTGGGAACTCTGTTAATGGAAAAATACTCCCAGTTATGTTTCCGGGAAATAGATTTTGCTGTAGATTTGAGAAAATAGATCCACTAGATCTAGACTAGTGTGTATATGAACATTTGTGTGATAGATGCCTAAACCAATATGTGGTCTGCTTACTAaggcaacagggatcttgatccaggagggcattgaatgtctctactgtaaccaagaagcttgatcttgacatctagGCACTGTGCCCTATACTAATGTGTATAGGAAGATCTTTGTGATAGATGCCTAAACCAATATGTGGCcccactttatttggatagtccagcTGTAGATGgtcaaactatctgttgataagcaactgcttacTAAGCTTGGGTTAATAGTTAGAGTTGGGGTTGGGGTCAGAGTTAAGTTTAGGGTTTGGTTAAGGTTGGCGTTTAGTACATAGTTAGTTGGAAtgtgatagtctgtagagcatctacaaaTGGACTGTCCAAATGAAGGGTTACTCTGCATGATATGCAGTGTTGATTTGACATAATTGATAAGCAGTTTGACGTTGAAGTAAAGAGTTTGTGTTGAATAGTTATTGCTAGAGATAGCTAGACATTATTCCTTGACTGTTTTATTGATAATAAATCAGTTTTGAATGTTCTTCTGATTCAAAACACCATTATAATACTATCTTCCCCAAATGAAAGATTTTGTATACTGCAAATGTATGTAAACATAATGTATTTAAGAATTATCTGATTATATGCAATTGTATCGCACGAAGATACAGTAACTTCCGTTGGATTGTGTTAAAACACTTGGTACCAATGATATTGCTGATGTCATGTTAATTTGAATATAATACTTTGATCTCTTATCTGAAACTAGGACTCCCAGAACCAAGGTACTTCCAGGCCTGATGTAGTCTAATTAAATGACTGTTTATTTCATTAAATGCTCTAAACTGATGAGAACAGATGAGATGTAGCCATAATCTGCACTGAAAGGTAGAGTAGATTTCAGTCAAGGTTAGACCATTAGCAGATGTTATGAAGGACAATCAAGTGAAAAATGTCAGTTTGACCTTTTTAATCATTTGGAAACCAGCTGACTAAAGTTTTACAGTTAGAAATGTAATGGTTTTCACCTGAAATGTTGAAAAGGATTTAATATTATTAAAGTTTCTTATCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966556.1 False 3610 mRNA 0.47 8 5018589 5026840
TU248804 False 362 TUCP 0.47 3 5018694 5021873
TU248803 True 1423 lncRNA 0.43 1 5025416 5026838

Neighbor

gene id symbol gene type direction distance location
LOC110516306 LOC105018869 coding upstream 720 4999319 ~ 5017869 (+)
LOC118936614 LOC106574548 coding upstream 19392 4984705 ~ 4999197 (+)
LOC110507681 sbp1 coding upstream 35102 4975047 ~ 4983487 (+)
LOC118944843 LOC106574283 coding upstream 184001 4829858 ~ 4834588 (+)
LOC118936613 LOC106573598 coding upstream 249294 4764613 ~ 4770261 (+)
LOC110507710 LOC106606072 coding downstream 953 5027793 ~ 5039155 (+)
LOC110520779 LOC106574086 coding downstream 29697 5056537 ~ 5150464 (+)
zgc:153896 LOC106574856 coding downstream 286792 5313632 ~ 5318428 (+)
LOC110535282 LOC106574835 coding downstream 292498 5301374 ~ 5324765 (+)
LOC110535312 LOC106574762 coding downstream 340792 5367632 ~ 5371403 (+)
G218300 NA non-coding upstream 27449 4989404 ~ 4991140 (+)
G218307 NA non-coding upstream 84514 4933832 ~ 4934075 (+)
G218306 NA non-coding upstream 88783 4929587 ~ 4929806 (+)
G218286 NA non-coding upstream 96440 4915148 ~ 4922149 (+)
G218274 NA non-coding upstream 125003 4893270 ~ 4893586 (+)
G218325 NA non-coding downstream 16060 5042900 ~ 5044159 (+)
G218338 NA non-coding downstream 51272 5078112 ~ 5080045 (+)
G218339 NA non-coding downstream 52173 5079013 ~ 5081026 (+)
G218348 NA non-coding downstream 79963 5106803 ~ 5107019 (+)
G218351 NA non-coding downstream 86430 5113270 ~ 5113529 (+)
G218293 NA other upstream 57139 4945003 ~ 4961450 (+)
G218309 NA other upstream 78695 4937097 ~ 4939894 (+)
G217896 NA other upstream 566033 4451754 ~ 4452556 (+)
G217870 NA other upstream 715733 4297556 ~ 4302856 (+)
G217809 LOC106593792 other upstream 875500 4142643 ~ 4143089 (+)
G218301 NA other downstream 298587 5325427 ~ 5326009 (+)
G218465 NA other downstream 433252 5460092 ~ 5561271 (+)
LOC110535491 LOC106606078 other downstream 506175 5533015 ~ 5627436 (+)
G218487 NA other downstream 517090 5543930 ~ 5633481 (+)
G218558 NA other downstream 721385 5748225 ~ 5748742 (+)
G218322 NA non-coding upstream 1808 5023261 ~ 5023608 (+)
LOC110507709 LOC106574077 other upstream 3543 5018589 ~ 5026840 (+)

Expression


Co-expression Network