LOC110534068 (LOC106574842)


Basic Information

Item Value
gene id LOC110534068
gene name LOC106574842
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5230340 ~ 5312338 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966592.1
GCAGTATTGTCAAGATAGTGATAGCGCAGCGCGCAGCAACATCTCATTGAAGAAGAGGGTGCATCTGAAGTGATGCGGGAGCCAGTGAAATCATCTTTGGGACTGTTCTCCAACCGTCTTTCAtaaagaggaaagggggagacacAACTACATTGAACGTCAAGAGGGCAGGCTCCTCTATCGCTGCTGATATAAACAATGGATTGAGAATGGGGTTTGGTTTTCTGTGTGGTGAAGTCATCTTTCTTAGCCGAGTTTGCTCAAATCGGAGCCTTTGAATTTGAAAAGTTTTTTTTGTCAGCATCACTCACTGGTTTGGGATTATTTTTGTTCATGTTTTTATAAGAACactcgccacacacacacaccatgagcaACATCTATGAGTCTGCGGCCAACACCCTTGGTCTGTTCAACAGCCCGTGCCTGGCCAAAGTGGAGCTGCGGGTGACCTGCAAGGGCATCTCAGACCGGGACGCCCTGTCCAAGCCAGACCCCTGCGTACTCATCAAAATGCAGTCCCACGGACAGTGGCTGGAGgttGACAGGACAGAGGTGATCCGTAGCTCCATAAGCCCCACCTTTTCTAAAGTCTTCACCGTGGACTTCTACTTTGAGGAAGTACAGCGGCTACGTTACGAGCTCTATGACATCAGCAGCAATCACAACGGCATCAAGGAGGCTGACTTTCTGGGGGCCATGGAGTGCACACTGGGACAGATTGTGTCCCAGAGGAAGCTCACCAAACCACTGCTCAAACAGGGCAGCACAGTGAGCAAGTCCTTCATCATGGTCACCGCCGAGGAGCTGACAGGGAATGATGATTATGTGGAACTTTCTTTCAGTGCCAGGAAACTTGACGACAAGGACTTTTTTAGCAAATCAGACCCTTTCCTGGAGATCTTCAGGATGAACGATGACGACACGCTACAGCTTGTGCACAGAACAGAGACTGTTATGAACAACCTTAACCCGGTGTGGAAAACCTTCAAGACTTCCCTGAATTCCCTCTGCAGTGGAGACCATGACCGGCCTCTAAAGtgcaCAGTGTGGGACTGGGACTCCAATGGGAAGCACGACTATATTGGTGAATATCAGGCCACATTCAAAGAGATGAGAGGGGCAATGGATGGGAGACAGGTCCAATGGGAGTGTATAAACCCCAAGTATCAGATCAAGAAGAAGAATTACAAGAACTCTGGTATCGTCATTCTCAATCAGTGCAAGATCATCAAGATGCACTCCTTCCTGGATTACATCATGGGAGGCTGTCAGATCCAGTTTACAGTAGCTATTGATTTCACCGCCTCGAACGGAGATCCTCACAACAGCTGCTCCCTACACTACATCCACCCATACCAGCCTAACGAGTACCTCAAAGCTCTGGTCGCTGTAGGGGAGATCTGCCAGGATTACGACAGTGACAAAATGTTCCCAGCGTTTGGCTTCGGCGCTCAGATTCCGCCCGACTTCAAGGTTTCTCACGATTTTGCAGTGAATTTTAATGAGGAAAACCCAGAATGTGCAGGTATCCAAGGGGTGGTGGAGGCCTATCAGACATGCCTTCCTAAGCTTCAGCTCTACGGCCCCACCAACATCGCCCCCATCATCCAGAAAGTAGCCAGCTCCGCTTCACAGGAAATGCACACCAAGGAGGCCATGCAGTACTTCATTCTGCTCATCCTAACGGACGGAGTGATCACAGACATGGCAGACACCCGCGAGGCCATCGTCCAAGCCTCCCACTTGCCCATGTCCATCATTATTGTAGGCGTGGGAAGTGCTGACTTCAGTGACATGCAGATGCTGGATGGAGATGACGGAATCCTTCGCTCGCCCAAGGGGGAGCCCTGCCTACGAGACATAGTCCAGTTCGTCCCCTTCCGCAACTTCAAACATGGCTCACCTGCAGAGCTGGCGAAGACTGTCCTAGCAGAAGTGCCCAACCAGGTGGttgactactacaacaacaagGGCATCAAGCCCAAAGTGCCCAGTGAGTTCGAGTCTTCCAGGACATTCGCCCCCTGAGAGGAGGGGCCCAACGCACTCGATACAACAGATAGCACCTTACGCTGACTAACTGAAAAGTTTACTGTTTTGCTCTTCGTTTGTTTGTTCTTTTCATTGTGCATGCGTGGCCTCCGAGGCTTGCATCTGTAAAGCAACGGTATCATTCAAAGCATTGGTATGGTGGGGGGACACACAAACGAACAACCAAACTGTCATCCCTACAGATGAACAACTATCGATGAAGGAATGTATAGAACACCCCCGTTCCTTTTTTTATAAGAGTTTGTTGAGATTTTGCTACATTTCTTGATATTCATACATTGTAAAACATTTTGGACCACAGTGAATGAACTAGCTACCTGCGTTTAGAAACGTCTGCGTCCTCAGTAGTCCATATTGCAGATAAGGCAGATGCATGAAGTGTTGTTTTGCATGCTGGTAATAAAGCAGACACTGTTTTCTCATG
>XM_036966594.1
AGGGCAGTATTGTCAAGATAGTGATAGCGCAGCGCGCAGCAACATCTCATTGAAGAAGAGGGTGCATCTGAAGTGATGCGGGAGCCAGTGAAATCATCTTTGGGACTGTTCTCCAACCGTCTTTCAtaaagaggaaagggggagacacAACTACATTGAACGTCAAGAGGGCAGGCTCCTCTATCGCTGCTGATATAAACAATGGATTGAGAATGGGGTTTGGTTTTCTGTGTGGTGAAGTCATCTTTCTTAGCCGAGTTTGCTCAAATCGGAGCCTTTGAATTTGAAAAGTTTTTTTTGTCAGCATCACTCACTGGTTTGGGATTATTTTTGTTCATGTTTTTATAAGAACactcgccacacacacacaccatgagcaACATCTATGAGTCTGCGGCCAACACCCTTGGTCTGTTCAACAGCCCGTGCCTGGCCAAAGTGGAGCTGCGGGTGACCTGCAAGGGCATCTCAGACCGGGACGCCCTGTCCAAGCCAGACCCCTGCGTACTCATCAAAATGCAGTCCCACGGACAGTGGCTGGAGgttGACAGGACAGAGGTGATCCGTAGCTCCATAAGCCCCACCTTTTCTAAAGTCTTCACCGTGGACTTCTACTTTGAGGAAGTACAGCGGCTACGTTACGAGCTCTATGACATCAGCAGCAATCACAACGGCATCAAGGAGGCTGACTTTCTGGGGGCCATGGAGTGCACACTGGGACAGATTGTGTCCCAGAGGAAGCTCACCAAACCACTGCTCAAACAGGGCAGCACAGTGAGCAAGTCCTTCATCATGGTCACCGCCGAGGAGCTGACAGGGAATGATGATTATGTGGAACTTTCTTTCAGTGCCAGGAAACTTGACGACAAGGACTTTTTTAGCAAATCAGACCCTTTCCTGGAGATCTTCAGGATGAACGATGACGACACGCTACAGCTTGTGCACAGAACAGAGACTGTTATGAACAACCTTAACCCGGTGTGGAAAACCTTCAAGACTTCCCTGAATTCCCTCTGCAGTGGAGACCATGACCGGCCTCTAAAGtgcaCAGTGTGGGACTGGGACTCCAATGGGAAGCACGACTATATTGGTGAATATCAGGCCACATTCAAAGAGATGAGAGGGGCAATGGATGGGAGACAGATCATCAAGATGCACTCCTTCCTGGATTACATCATGGGAGGCTGTCAGATCCAGTTTACAGTAGCTATTGATTTCACCGCCTCGAACGGAGATCCTCACAACAGCTGCTCCCTACACTACATCCACCCATACCAGCCTAACGAGTACCTCAAAGCTCTGGTCGCTGTAGGGGAGATCTGCCAGGATTACGACAGTGACAAAATGTTCCCAGCGTTTGGCTTCGGCGCTCAGATTCCGCCCGACTTCAAGGTTTCTCACGATTTTGCAGTGAATTTTAATGAGGAAAACCCAGAATGTGCAGGTATCCAAGGGGTGGTGGAGGCCTATCAGACATGCCTTCCTAAGCTTCAGCTCTACGGCCCCACCAACATCGCCCCCATCATCCAGAAAGTAGCCAGCTCCGCTTCACAGGAAATGCACACCAAGGAGGCCATGCAGTACTTCATTCTGCTCATCCTAACGGACGGAGTGATCACAGACATGGCAGACACCCGCGAGGCCATCGTCCAAGCCTCCCACTTGCCCATGTCCATCATTATTGTAGGCGTGGGAAGTGCTGACTTCAGTGACATGCAGATGCTGGATGGAGATGACGGAATCCTTCGCTCGCCCAAGGGGGAGCCCTGCCTACGAGACATAGTCCAGTTCGTCCCCTTCCGCAACTTCAAACATGGCTCACCTGCAGAGCTGGCGAAGACTGTCCTAGCAGAAGTGCCCAACCAGGTGGttgactactacaacaacaagGGCATCAAGCCCAAAGTGCCCAGTGAGTTCGAGTCTTCCAGGACATTCGCCCCCTGAGAGGAGGGGCCCAACGCACTCGATACAACAGATAGCACCTTACGCTGACTAACTGAAAAGTTTACTGTTTTGCTCTTCGTTTGTTTGTTCTTTTCATTGTGCATGCGTGGCCTCCGAGGCTTGCATCTGTAAAGCAACGGTATCATTCAAAGCATTGGTATGGTGGGGGGACACACAAACGAACAACCAAACTGTCATCCCTACAGATGAACAACTATCGATGAAGGAATGTATAGAACACCCCCGTTCCTTTTTTTATAAGAGTTTGTTGAGATTTTGCTACATTTCTTGATATTCATACATTGTAAAACATTTTGGACCACAGTGAATGAACTAGCTACCTGCGTTTAGAAACGTCTGCGTCCTCAGTAGTCCATATTGCAGATAAGGCAGATGCATGAAGTGTTGTTTTGCATGCTGGTAATAAAGCAGACACTGTTTTCTCATG

Function

NR:

description
PREDICTED: copine-4 isoform X2

GO: NA

KEGG:

id description
K24525 CPNE4_6_7; copine 4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966592.1 False 2479 mRNA 0.49 16 5230340 5312335
XM_036966594.1 True 2395 mRNA 0.49 15 5230340 5312338

Neighbor

gene id symbol gene type direction distance location
LOC110507711 LOC106574107 coding downstream 176010 5042896 ~ 5054330 (-)
LOC118944848 NA coding downstream 222455 5006952 ~ 5007885 (-)
LOC110518085 LOC106593045 coding downstream 286840 4937429 ~ 4943500 (-)
plekho1b LOC106606096 coding downstream 337823 4852703 ~ 4892517 (-)
LOC110507598 snrk coding downstream 467203 4704539 ~ 4763137 (-)
LOC110535324 LOC106605869 coding upstream 11786 5324124 ~ 5333624 (-)
LOC110515205 ci023 coding upstream 21535 5333873 ~ 5335574 (-)
LOC110535340 LOC106574784 coding upstream 39802 5352140 ~ 5355536 (-)
LOC110535504 LOC106574737 coding upstream 63784 5376122 ~ 5439903 (-)
LOC110517595 LOC106585541 coding upstream 145188 5457526 ~ 5492523 (-)
G219388 NA non-coding downstream 18697 5211348 ~ 5211643 (-)
G219387 NA non-coding downstream 21042 5208876 ~ 5209298 (-)
G219386 NA non-coding downstream 23756 5206164 ~ 5206584 (-)
G219383 NA non-coding downstream 27580 5202547 ~ 5202760 (-)
G219382 NA non-coding downstream 28298 5201830 ~ 5202042 (-)
G219449 NA non-coding upstream 19491 5331829 ~ 5332056 (-)
G219450 NA non-coding upstream 25909 5338247 ~ 5338461 (-)
G219459 NA non-coding upstream 100026 5412364 ~ 5414964 (-)
G219464 NA non-coding upstream 113401 5425739 ~ 5426232 (-)
G219491 NA non-coding upstream 195703 5508041 ~ 5603177 (-)
G219290 LOC106593286 other downstream 220934 5008084 ~ 5009406 (-)
G219200 NA other downstream 458289 4770350 ~ 4772051 (-)
LOC118944839 LOC106573494 other downstream 581537 4634932 ~ 4648920 (-)
LOC118944829 LOC106606066 other downstream 689899 4535483 ~ 4553394 (-)
G218073 LOC106605488 other downstream 789903 4439096 ~ 4440437 (-)
G219500 NA other upstream 375387 5687725 ~ 5688291 (-)
G219591 NA other upstream 435820 5748158 ~ 5748714 (-)
G219592 NA other upstream 439386 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 1017264 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 1020630 6332968 ~ 6338813 (-)

Expression


Co-expression Network