LOC110535340 (LOC106574784)


Basic Information

Item Value
gene id LOC110535340
gene name LOC106574784
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5352140 ~ 5355536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966650.1
TAACTATTATATGCCTACTGTGACAAGATACAATATGGGAGTGACAGATATGAGGTAAGGAAAATGAAACTTAAGGAAAGGAAAACTCACCCATTGTAATAATACTAGCCTCACTCAGTCACTCCCATGACTGCTGAAACTCTTCACTAAGAAATACATCACATCCCAGACAGAGCACACCATGGGCGTCCAGGGATTGACCAGCTTTATGGAGGAGAATGGAAACATTTTAAAAGATGTTCACCTCAGAAACAGCAAGTTGATCATCGATGGCAGTAATCTGTTCAACTTGCTTTATTTTAACTCACGTTTGGATCAGAGTCATGGAGGGGATTATGATGCTTTTGAGGACCAGGTCTGCAAGTTCTTTAAGGCTCTGAGAGACTGCGACATTGACCCCTTTGTGATTGTAGATGGGGGCTCCGACTACACCGACAAAAAGTTTGAAACTCTCAAAGAACGAGCTCAATCAAGGATCAACACTGCCAATGACTTGTCCATGGGGCTTCAGGGGAGCGGTGGTATATTACCAACCCTCATCAAATATGTCTTCAAACAGGTCCTCATCAGCCTGAATGTGCCGTACGCACAGTGCATTTGTGAGGCAGACCAAGAAATAGCCTCCCTGGCTCGAAGTTGGAACTGTCCAGTGCTGTCCAATGACAGTGACTTTTATATCTTTGACATCCAGGCAGGATTTCTGCCTATCTCCCATTTTCACTGGCAGAGAGTGTCTATGCAACGCGGGAGCTCTATAAGATACATTCCCTGCAAGCAGTACACCACAACAAGCTTCTGCAGACACTTCAACATCAACAGAAAAGTTCTCCCGGTCTTTGCCTCTGTGGCAGGAAATGACTACATCAAGTTGCGTAACATGGGTGTTTCCCTCAGGTGGGAAGAATACTCGTCAATGAAAGGAAGGTTTGCCCGCTTCGACGGCTTGCTGAATTGGCTGGCCCACTTCCATGGGCAGGAGGAGGCCTTGGACTCCGTGCTCAGGCTCATCAGTCATAGTAACAACAGACAGAAAACAGGTGCTGTCCTCCATGGCCTCTCCCTGGGCATAGAAGAGTACCATCTTCCCCCTAGTTGCCTGGAGCGGTTCTTCAACGATGGAGTGGGACCAGGGCCCGGCCGTCTCCCAGAGCCTCTGAGGGTCCTTCCAGACTGGACCCTGCTGCCATTGATGGAAGGTAGACTTCCCTCCTGCATGGTAGACGTGATGCTGCTGGGAAGGATGATGCAGGGTGCCCAGGTGGAAGATCCCAGCTTGCCATGTGGGAACAACACCTCTCGGTCAATACGACAGGTACTCTACGGGCTGCTGCTGGGTGGGAGGAGGGCAGACCACAGCAGTCAGAGACCCCCAGTGGATGAAGTGGAGGAGTATTACAGGGAAGGCAAGAGCCTGACCAGCAGCATGGTTGATACCATCCTGCCCAGTGCTGCAGAACATATACAGCTAGACACTCTGCATCAGGCTCCAAGGTTAGTGCAGCTTAAGGTGTTTTTGGAGACACTTGGTGTGTCCCAGTCCACTTTGAGCGGTGTCCCGCCTCATCTGCGTCTTCCTGTGGCTGTCACCTGCTACTGGCTGAGGCACGCCCATCCCCCTCCAGAACTCCCTGTCCTGCAGGCCCTGCTACTAGGATTGGTGTACGGAGAGCTCTGCAGACAGAGGAAGAGCCAAAGAGGGTTTATGGAGGGACCAGTGTTGGAGAGGCTGAGAGGGCTGATTCAGAGAGGTAGAAGGAGCCTAGACCTAGGTGTGGCCCACGCCTACAGCCAGTGGCAGTGCTGCCTGAAAGAAAGCCTTCACCTCAACCAACTGCTGTGCTTCCCTCTAGCCGAGCCTCAGTGTGCCTGGCTGTACAAGGGCACTCTGGTGCACCAGCTTGTGACCAAACTGAGAGGGGGGTTAACCCCGGATTCTCTCCTGATGGGAGGCCCTTGCTCTGGGCAGCTGTATAGGCCCATGCTGGGAGCCATACTCAACTCCCATGATGCCGCTGTCATCCCCTTGGTGTCTGGGCCACAGAGGGCCACACCTCCATCCTTGACACAGCCACTGGACGATCTGACGGCCCATCTACACATTCTGGCTCTggaatatgatgatgatgatggtgctgGAGGTGGGAGCAAGGCCAAGCCAGAGGACGATCTGGGTTGGACGTTGGTCTCAGTGCGGACCAGGCACAAGAGCAAGGACAGATTCAACCGAGCTAGGAATCCAGAATTCTCCCGGAAGCAGGGGCGGATCGGCTGGGAATAGGGAGGGACCATTATATAACGGTTTAGATATAGAGACGTTCTGCTCAACTCTTCAATGTTTTTATTGTTCTTGTGTGTACTGTCGtagctgaatcagaattagttaggtaacattgataaataagatgttttattttttctcATAATATGCTTCTCTTGGGaaaagtcacttggggcccagagaggggagaggtcaggcttgtcttttacATGTCTGGTAATaggcagaatatcagaaagggagaGGTCAGGTTTGAACAAAATCTTCATAATGAATATATCTGTGaaaccatgtgaagggctccactatgtctgtactccagtcactccctccttttcccattggggggaggagtatggcagtgtctagaaccattgtatgtcccctctgatgtTGAAACTTGTCTTTCATagtatatgacctagaggctcactcccctcagGGAGCTTGTCCAGGGGTGggttgtatttgagatgggagtatctagaattgacaattgatatatgccattggatgaggtaatgttttggtaatatgaagtaccaagaacgagaagtagaacctcgtctaagagaccaaactgaacgataatttatagctaatgctatctggctatggaatactcctctctcaagtaaaaggccctttgttaagttcctaagatctgtggttcgtcatTGTGAGTTGAGAgaggtgtatcttggctataaaagatgaAGTATtattttgtaagcactctcagaatAAAtgtatagacactgaattgatctgagagtcaaagggctatggtgaagctcatattaataaaatatgaagttt

Function

NR:

description
protein asteroid homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966650.1 True 3097 mRNA 0.49 4 5352140 5355536

Neighbor

gene id symbol gene type direction distance location
LOC110515205 ci023 coding downstream 16566 5333873 ~ 5335574 (-)
LOC110535324 LOC106605869 coding downstream 18516 5324124 ~ 5333624 (-)
LOC110534068 LOC106574842 coding downstream 39802 5230340 ~ 5312338 (-)
LOC110507711 LOC106574107 coding downstream 297810 5042896 ~ 5054330 (-)
LOC118944848 NA coding downstream 344255 5006952 ~ 5007885 (-)
LOC110535504 LOC106574737 coding upstream 20586 5376122 ~ 5439903 (-)
LOC110517595 LOC106585541 coding upstream 101990 5457526 ~ 5492523 (-)
LOC110513540 LOC106585541 coding upstream 202458 5557994 ~ 5590146 (-)
LOC110533792 LOC106605966 coding upstream 368146 5723682 ~ 5725550 (-)
LOC110535565 LOC106606103 coding upstream 399524 5755060 ~ 5766123 (-)
G219450 NA non-coding downstream 13679 5338247 ~ 5338461 (-)
G219449 NA non-coding downstream 20084 5331829 ~ 5332056 (-)
G219388 NA non-coding downstream 140497 5211348 ~ 5211643 (-)
G219387 NA non-coding downstream 142842 5208876 ~ 5209298 (-)
G219386 NA non-coding downstream 145556 5206164 ~ 5206584 (-)
G219459 NA non-coding upstream 56828 5412364 ~ 5414964 (-)
G219464 NA non-coding upstream 70203 5425739 ~ 5426232 (-)
G219491 NA non-coding upstream 152505 5508041 ~ 5603177 (-)
G219494 NA non-coding upstream 161860 5517396 ~ 5611217 (-)
G219495 NA non-coding upstream 163827 5519363 ~ 5612281 (-)
G219290 LOC106593286 other downstream 342734 5008084 ~ 5009406 (-)
G219200 NA other downstream 580089 4770350 ~ 4772051 (-)
LOC118944839 LOC106573494 other downstream 703337 4634932 ~ 4648920 (-)
LOC118944829 LOC106606066 other downstream 811699 4535483 ~ 4553394 (-)
G218073 LOC106605488 other downstream 911703 4439096 ~ 4440437 (-)
G219500 NA other upstream 332189 5687725 ~ 5688291 (-)
G219591 NA other upstream 392622 5748158 ~ 5748714 (-)
G219592 NA other upstream 396188 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 974066 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 977432 6332968 ~ 6338813 (-)

Expression


Co-expression Network