LOC118944859 (LOC106585606)


Basic Information

Item Value
gene id LOC118944859
gene name LOC106585606
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5498544 ~ 5503473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040249.1
AGCAGTAAGGATTGTGTGGGGTGTAAACTGTATGAGATGGGAGGACACTTTGCAGGTGAGCCCCACCCTCTCCTGTTGCACAGACTGCTAGCAGAGAGAGCAGCAAACACACCTGGACAACACAAACCTGTGGGATATTCACATTTCACATATGCAAAAAAGAGAAAGGTTCTCCTGAAGTCCCTTCTCCCCTGCGTCTCCAGAGGGCCTCTACCATGATGAAGCTGACCGGTGCTATTCTACTTCTCTCGTTGGTGTCGCTAGTCCACGGTGCCTGCTCTCTCAatgggaggaacagaggagaccTCTATGACTGCCCAGCGGACGTGTACATTGTTCTGGACACCTCAGAGAGTGTGGCACTGAGGGCCAAGCCCTACGGCTCCTTTGTTGATCAGATCAAGCAGTTTGCCCTGGACTTTGTGGACCTGCTCAATACTAG

Function

NR:

description
collagen alpha-1(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040249.1 True 442 mRNA 0.52 3 5498544 5503473

Neighbor

gene id symbol gene type direction distance location
LOC110534114 LOC106574714 coding upstream 44055 5440095 ~ 5454489 (+)
LOC110535312 LOC106574762 coding upstream 127141 5367632 ~ 5371403 (+)
LOC110535282 LOC106574835 coding upstream 174644 5301374 ~ 5324765 (+)
zgc:153896 LOC106574856 coding upstream 180116 5313632 ~ 5318428 (+)
LOC110520779 LOC106574086 coding upstream 348080 5056537 ~ 5150464 (+)
LOC110493157 LOC106585480 coding downstream 618 5504091 ~ 5537123 (+)
LOC118944860 NA coding downstream 16618 5520091 ~ 5520401 (+)
LOC118936615 LOC106585480 coding downstream 102304 5605777 ~ 5612122 (+)
LOC110535491 LOC106606078 coding downstream 121782 5533015 ~ 5627436 (+)
LOC110534121 slc4a7 coding downstream 133789 5637262 ~ 5706145 (+)
G218294 NA non-coding upstream 42148 5356558 ~ 5456396 (+)
G218455 NA non-coding upstream 77762 5419666 ~ 5420782 (+)
G218295 NA non-coding upstream 88443 5359700 ~ 5410101 (+)
G218441 NA non-coding upstream 149383 5347526 ~ 5349161 (+)
G218437 NA non-coding upstream 167058 5330703 ~ 5331486 (+)
G218486 NA non-coding downstream 35101 5538574 ~ 5629141 (+)
G218497 LOC106585480 non-coding downstream 93113 5596586 ~ 5602412 (+)
G218487 NA non-coding downstream 128923 5543930 ~ 5633481 (+)
G218534 NA non-coding downstream 179925 5683398 ~ 5683643 (+)
G218301 NA other upstream 172535 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 476671 5018589 ~ 5026840 (+)
G218293 NA other upstream 537094 4945003 ~ 4961450 (+)
G218309 NA other upstream 558650 4937097 ~ 4939894 (+)
G217896 NA other upstream 1045988 4451754 ~ 4452556 (+)
G218558 NA other downstream 244752 5748225 ~ 5748742 (+)
LOC110508149 LOC106593364 other downstream 387053 5822391 ~ 5898142 (+)
LOC110508220 sc61b other downstream 453854 5957257 ~ 5963980 (+)

Expression


Co-expression Network