LOC118936615 (LOC106585480)


Basic Information

Item Value
gene id LOC118936615
gene name LOC106585480
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5605777 ~ 5612122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966718.1
CTCCAGGACGTCAGGGGGTTGCCGGGAGACCGGAAAGTTTGGGAGCAAAGGGGACTGCAGGTGACCAGGGGCcccaaggacacagaggagagaagGGTGACCGTGGTCCTATTGGTGACAGAGGTCCGAGAGGACCATCTGGACAAAAGGGTGAGAGAGGAGCGGATGGAGTGGACGGGAAGGATGGCCTTGTGgggGACTCTGGGGTTATGGGCCTGTCTGGTTGTAGAGGAGACGAGGGGGCAGAGGGGGAGCCAGGTCCTCTGGGGCAGAAAGGAGATGAAGGATCTTATGGATTACCTGGACAAAAGggagagatgggaacaCCTGGGGAGCCAGGGGTTCCTGGAGTGTCTGGAGCCAACGGAGCCAAGGGGGAGCCTGGACCAATCGGAGGACCTGGAAATAAGGGTGACCAAGGAGACGAAGGGGACTTTGGACCGTCTGGAGCGCCAGgcacagagggtgtagggggagagaggggactaAGAGGTGCTCCAGGAATAAGAGGTGGTCAAGGGGAGACGGGTGACACAGGCTCTGCTGGAGCACAGGGTCATGAAGGTCAGGCTGGAGACGTGGGTTCACAGGATGTTAAGGGCTCCAGGGGGCCTCCAGGAGCACCGGGAGATGCAGGGCCCATTGGGAAAAGGgaACACAAGGAGAAGGCCAACCTGGATATCCAGGGTTCCAGGGATACCCTGGTCTGAGAGGACCTGCAGGTttaaaggtctgtctgtctgtctgtctgg

Function

NR:

description
collagen alpha-1(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966718.1 True 752 mRNA 0.60 14 5605777 5612122

Neighbor

gene id symbol gene type direction distance location
LOC110493157 LOC106585480 coding upstream 68654 5504091 ~ 5537123 (+)
LOC118944860 NA coding upstream 85376 5520091 ~ 5520401 (+)
LOC118944859 LOC106585606 coding upstream 102304 5498544 ~ 5503473 (+)
LOC110534114 LOC106574714 coding upstream 151288 5440095 ~ 5454489 (+)
LOC110535312 LOC106574762 coding upstream 234374 5367632 ~ 5371403 (+)
LOC110535491 LOC106606078 coding downstream 13133 5533015 ~ 5627436 (+)
LOC110534121 slc4a7 coding downstream 25140 5637262 ~ 5706145 (+)
LOC110535554 LOC106605965 coding downstream 117795 5729917 ~ 5733058 (+)
cklf7 cklf7 coding downstream 123684 5735806 ~ 5744817 (+)
trnat-ugu-30 NA coding downstream 188755 5800877 ~ 5800949 (+)
G218497 LOC106585480 non-coding upstream 3365 5596586 ~ 5602412 (+)
G218476 LOC106585544 non-coding upstream 31217 5474121 ~ 5574560 (+)
G218475 LOC106585541 non-coding upstream 32706 5472865 ~ 5573071 (+)
G218473 NA non-coding upstream 35835 5469227 ~ 5569942 (+)
G218465 NA non-coding upstream 44506 5460092 ~ 5561271 (+)
G218487 NA non-coding downstream 20274 5543930 ~ 5633481 (+)
G218534 NA non-coding downstream 71276 5683398 ~ 5683643 (+)
G218537 NA non-coding downstream 79054 5691176 ~ 5692870 (+)
G218538 NA non-coding downstream 79784 5691906 ~ 5693069 (+)
G218301 NA other upstream 279768 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 583904 5018589 ~ 5026840 (+)
G218293 NA other upstream 644327 4945003 ~ 4961450 (+)
G218309 NA other upstream 665883 4937097 ~ 4939894 (+)
G218558 NA other downstream 136103 5748225 ~ 5748742 (+)
LOC110508149 LOC106593364 other downstream 278404 5822391 ~ 5898142 (+)
LOC110508220 sc61b other downstream 345205 5957257 ~ 5963980 (+)
LOC110535756 stx17 other downstream 517208 6129251 ~ 6157940 (+)
LOC110534148 invs other downstream 595381 6174662 ~ 6228920 (+)

Expression


Co-expression Network