LOC110535491 (LOC106606078)


Basic Information

Item Value
gene id LOC110535491
gene name LOC106606078
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5533015 ~ 5627436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966735.1
TTGATGTCCCATACTTGCAGCTCGGTGAGAAACATGCACTGGATTGCCGGTGGTACGTACACGGGAGAGGCGCTGGATTTTGCCCGGCAGGCATTCGGCAGCTCCCAGCTGGACCGAAAGGTGGCCATAGTCTTGACAGACGGACGGTCGGACACCCGCCGGGACGCCAAACCGCTGTCCTCCCTCTGCTCTGTGCCCAATATAAGGGTGGTGGGCAATTGGCATAGGTGACATCTTCAGATGGGCGTCCTACGCCACCATGCTGGAGGAGATCACCTGTCTGGGCACAGCCTCACCTGGACTCTACCTGAAGATTACAGACGACGTGCAACTGCTGGAGGACTCCTTCTTCAACAACGTTACTGGCTATATCTGCCAAGATAAGAAATGTCATGATTACACCTGTCCAGCCAACTTCCAGGAAGCTACAGACATAGTCTTCATGTTGGACGGCTCCTCCAGTGTGGGCCAGGCCAACTTCTACAGAGCCAGAGAGTTTGTTGAGAACATGGCCGCCAGGCTGCTGTCACAGGACCGGGGAGGGCTGCTCCGCCTGTCCGTCATGCAGTACAGCGATGGGCAGCAGCAGAGAGTGGAGGTGCCCTTCACTGCTAGGGTTGAGGATGTGCTAACGGGGCTAGCAGCTACGCTCTACATGGACGGGGCCACCGACTTACCGGCTGCCCTGACCTTCCTGACCTCCACCCTCCAGAGGGAGGGCCGCTCTGCTGTCCCCAGGAAAGTAGTGGTGTTCACGGACGGCAGGTCTGTGGCCTCTGCCCGGGCTGCTATCCCCAGAGCCGCCGCCGCTCTGGCAGAGAACACACAGCTGCTGGCCGTCACTGTGGGCGAGGGCTTTGACGAGGCGGGCGTGTGCCAGCTGGTGATGGGACAGGCGAACGGATTTGATTACCACGTCGTGGATAATCGTGTCCACCGAGTGGCGCTGTACAGTGACCTGGCCAGACGGGTGGTCATGCAGAGCCTGGCTAGAAAGCTCTCTAAAGCTTTCTGAAGCTCTCCAAAGCTCTCTGAAGTTCTCTAAAGCTCTCTGAAGCTCTGTAAAGCTATCTCAAGCTCTCTGAAGTTCTCTAAAGCTCTCTAAAGCTCTCCGAAGCACTCTAAAGCTCTCTGAAGCTCTGTAAAGCTATCTCAAGCTCTCTGAAGTTCTCTAAAGTTCTCTAAAGCTATGTAAAGCTCTCTAAAGCTTTCTGAAGCTCTGTAAAGCTTTCTGAAGCTCTGTAAAGCTCTCTGAAGCCCCGTAAAGCTCTCTGAAGCTCTCCAAAGCTCTGTAAAGCTCTCTGGAGCCCTCTAACGCTCTTAAAGACCTCCCTACTACTGAACTGTCTATGAATTGTCCTGTTGTGCCATGTATTAGGCCATTAAGAAATTAGATAGATATGGTGCACATTTTATACTTTTGTGTTTTCCTTATGCCTTTGAGGGCCTCCTGCTTTTCATGTGAAATAAAATGAATATGTTTGTCATAAGAAGCACTTGGGTAGATGAATAAACGTTACGCTGTAAGTTTGGTGATAAGATGAA
>XM_036966739.1
GCGTCCTACGCCACCATGCTGGAGGAGATCACCTGTCTGGGCACAGCCTCACCTGGACTCTACCTGAAGATTACAGACGACGTGCAACTGCTGGAGGACTCCTTCTTCAACAACGTTACTGGCTATATCTGCCAAGGTAGACTGTGTACAGGCTAGCTCTAATTTACAATATCTGGAGCTAGCTACATCTGCTAAGGTAGTCTATGTACAGGCTAGCCCTAATTTACAATATCAGGAGCTAGCTACATGCTATGTTCCTATGCTCTCAACTAAGGTCTGGGTTGTGTTTACAGATAAGAAATGTCATGATTACACCTGTCCAGCCAACTTCCAGGAAGCTACAGACATAGTCTTCATGTTGGACGGCTCCTCCAGTGTGGGCCAGGCCAACTTCTACAGAGCCAGAGAGTTTGTTGAGAACATGGCCGCCAGGCTGCTGTCACAGGACCGGGGAGGGCTGCTCCGCCTGTCCGTCATGCAGTACAGCGATGGGCAGCAGCAGAGAGTGGAGGTGCCCTTCACTGCTAGGGTTGAGGATGTGCTAACGGGGCTAGCAGCTACGCTCTACATGGACGGGGCCACCGACTTACCGGCTGCCCTGACCTTCCTGACCTCCACCCTCCAGAGGGAGGGCCGCTCTGCTGTCCCCAGGAAAGTAGTGGTGTTCACGGACGGCAGGTCTGTGGCCTCTGCCCGGGCTGCTATCCCCAGAGCCGCCGCCGCTCTGGCAGAGAACACACAGCTGCTGGCCGTCACTGTGGGCGAGGGCTTTGACGAGGCGGGCGTGTGCCAGCTGGTGATGGGACAGGCGAACGGATTTGATTACCACGTCGTGGATAATCGTGTCCACCGAGTGGCGCTGTACAGTGACCTGGCCAGACGGGTGGTCATGCAGAGCCTGGCTAGAAAGCTCTCTAAAGCTTTCTGAAGCTCTCCAAAGCTCTCTGAAGTTCTCTAAAGCTCTCTGAAGCTCTGTAAAGCTATCTCAAGCTCTCTGAAGTTCTCTAAAGCTCTCTAAAGCTCTCCGAAGCACTCTAAAGCTCTCTGAAGCTCTGTAAAGCTATCTCAAGCTCTCTGAAGTTCTCTAAAGTTCTCTAAAGCTATGTAAAGCTCTCTAAAGCTTTCTGAAGCTCTGTAAAGCTTTCTGAAGCTCTGTAAAGCTCTCTGAAGCCCCGTAAAGCTCTCTGAAGCTCTCCAAAGCTCTGTAAAGCTCTCTGGAGCCCTCTAACGCTCTTAAAGACCTCCCTACTACTGAACTGTCTATGAATTGTCCTGTTGTGCCATGTATTAGGCCATTAAGAAATTAGATAGATATGGTGCACATTTTATACTTTTGTGTTTTCCTTATGCCTTTGAGGGCCTCCTGCTTTTCATGTGAAATAAAATGAATATGTTTGTCATAAGAAGCACTTGGGTAGATGAATAAACGTTACGCTGTAAGTTTGGTGATAAGATGAA
>TU249020
ctgaaatgtggcaaaaggttgcaaagttcaagggggccgaatactttcgcaaggcactgtaggtgttttTTTTaggtcaagtttcaggagcttCTTTAGCACCTttgactcagtgactgcctgcagggagaaactttgttgcAGGgcagaggaaaaagagggagaagcatcggggatagccacattagaaggggtgggagatgaggaaatgttggacgggcaaggaggcgtGGCTGAGTCAAATATGAATCCCGACCTAacgaagtggtgattaaagagctcagccatgtgcttcttgtcagtaacaaccatatcatcaactttaaggaacatgggcagctgtgaggaggagggtttattctccaggtctttaaccgttctccagaacttcttggggctagacccacagagagagaactgctccttaaagtaactaacgttggccttccggatagcctgagtgcacttatttctcatttgcttgaatgagtatgtgtgttccGAGCCGTtcaccaaatgcaattcttgaggtggagtaactctgcaagatcacggccactgactgactaactgttGTGTTTGATGTCCCATACTTGCAGCTCGGTGAGAAACATGCACTGGATTGCCGGTGGTACGTACACGGGAGAGGCGCTGGATTTTGCCCGGCAGGCATTCGGCAGCTCCCAGCTGGACCGAAAGGTGGCCATAGTCTTGACAGACGGACGGTCGGACACCCGCCGGGACGCCAAACCGCTGTCCTCCCTCTGCTCTGTGCCCAATATAAGGGTGGTGGGCAATTGGCATAGGTGACATCTTCAGATGGGCGTCCTACGCCACCATGCTGGAGGAGATCACCTGTCTGGGCACAGCCTCACCTGGACTCTACCTGAAGATTACAGACGACGTGCAACTGCTGGAGGACTCCTTCTTCAACAACGTTACTGGCTATATCTGCCAAGATAAGAAATGTCATGATTACACCTGTCCAGCCAACTTCCAGGAAGCTACAGACATAGTCTTCATGTTGGACGGCTCCTCCAGTGTGGGCCAGGCCAACTTCTACAGAGCCAGAGAGTTTGTTGAGAACATGGCCGCCAGGCTGCTGTCACAGGACCGGGGAGGGCTGCTCCGCCTGTCCGTCATGCAGTACAGCGATGGGCAGCAGCAGAGAGTGGAGGTGCCCTTCACTGCTAGGGTTGA
>TU249013
ATGCTGGAGGAGATCACCTGTCTGGGCACAGCCTCACCTGGACTCTACCTGAAGATTACAGACGACGTGCAACTGCTGGAGGACTCCTTCTTCAACAACGTTACTGGCTATATCTGCCAAGATAAGAAATGTCATGATTACACCTGTCCAGCCAACTTCCAGGAAGCTACAGACATAGTCTTCATGTTGGACGGCTCCTCCAGTGTGGGCCAGGCCAACTTCTACAGAGCCAGAGAGTTTGTTGAGAACATGGCCGCCAGGCTGCTGTCACAGGACCGGGGAGGGCTGCTCCGCCTGTCCGTCATGCAGTACAGCGATGGGCAGCAGCAGAGAGTGGAGGTGCCCTTCACTGCTAGGGTTGAGGATGTGCTAACGGGGCTAGCAGCTACGCTCTACATGGACGGGGCCACCGACTTACCGGCTGCCCT
>TU249016
ATGCTGGAGGAGATCACCTGTCTGGGCACAGCCTCACCTGGACTCTACCTGAAGATTACAGACGACGTGCAACTGCTGGAGGACTCCTTCTTCAACAACGTTACTGGCTATATCTGCCAAGGTAGACTGTGTACAGGCTAGCTCTAATTTACAATATCTGGAGCTAGCTACATCTGCTAAGGTAGTCTATGTACAGGCTAGCCCTAATTTACAATATCAGGAGCTAGCTACATGCTATGTTCCTATGCTCTCAACTAAGGTCTGGGTTGTGTTTACAGATAAGAAATGTCATGATTACACCTGTCCAGGTAAGACTGCTCCTCTCCCTTGTTTTTATGGTCACAGTTTCCTATGCATTACAATACGTTGTTTTTTTAGCATTCAGCCTAGTACTGCAATTTAAAGATTTAGTGGAATGTATGTAAATGTATCTGAACCCCAACTGCTGTTCTAAAATAGTCTACTCTTCCTCCAGCCAACTTCCAGGAAGCTACAGACATAGTCTTCATGTTGGACGGCTCCTCCAGTGTGGGCCAGGCCAACTTCTACAGAGCCAGAGAGTTTGTTGAGAACATGGCCGCCAGGCTGCTGTCACAGGACCGGGGAGGGCTGCTCCGCCTGTCCGTCATGCAGTACAGCGATGGGCAGCAGCAGAGAGTGGAGGTGCCCTTCACTGCTAGGGTTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966735.1 False 1545 mRNA 0.53 4 5625255 5627436
XM_036966739.1 False 1458 mRNA 0.50 3 5625692 5627436
TU249020 False 1200 TUCP 0.52 5 5533015 5626512
TU249013 False 428 TUCP 0.56 3 5625707 5626578
TU249016 True 686 lncRNA 0.48 2 5625707 5626512

Neighbor

gene id symbol gene type direction distance location
LOC118936615 LOC106585480 coding upstream 13133 5605777 ~ 5612122 (+)
LOC110493157 LOC106585480 coding upstream 88132 5504091 ~ 5537123 (+)
LOC118944860 NA coding upstream 104854 5520091 ~ 5520401 (+)
LOC118944859 LOC106585606 coding upstream 121782 5498544 ~ 5503473 (+)
LOC110534114 LOC106574714 coding upstream 170766 5440095 ~ 5454489 (+)
LOC110534121 slc4a7 coding downstream 9826 5637262 ~ 5706145 (+)
LOC110535554 LOC106605965 coding downstream 102481 5729917 ~ 5733058 (+)
cklf7 cklf7 coding downstream 108370 5735806 ~ 5744817 (+)
trnat-ugu-30 NA coding downstream 173441 5800877 ~ 5800949 (+)
LOC110508149 LOC106593364 coding downstream 194955 5822391 ~ 5898142 (+)
G218497 LOC106585480 non-coding upstream 22843 5596586 ~ 5602412 (+)
G218476 LOC106585544 non-coding upstream 50695 5474121 ~ 5574560 (+)
G218475 LOC106585541 non-coding upstream 52184 5472865 ~ 5573071 (+)
G218473 NA non-coding upstream 55313 5469227 ~ 5569942 (+)
G218465 NA non-coding upstream 63984 5460092 ~ 5561271 (+)
G218487 NA non-coding downstream 4960 5543930 ~ 5633481 (+)
G218534 NA non-coding downstream 55962 5683398 ~ 5683643 (+)
G218537 NA non-coding downstream 63740 5691176 ~ 5692870 (+)
G218538 NA non-coding downstream 64470 5691906 ~ 5693069 (+)
G218539 NA non-coding downstream 65900 5693336 ~ 5694495 (+)
G218301 NA other upstream 299246 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 603382 5018589 ~ 5026840 (+)
G218293 NA other upstream 663805 4945003 ~ 4961450 (+)
G218309 NA other upstream 685361 4937097 ~ 4939894 (+)
G218558 NA other downstream 120789 5748225 ~ 5748742 (+)
LOC110508220 sc61b other downstream 329891 5957257 ~ 5963980 (+)
LOC110535756 stx17 other downstream 501894 6129251 ~ 6157940 (+)
LOC110534148 invs other downstream 580067 6174662 ~ 6228920 (+)
LOC110535312 LOC106574762 coding upstream 161612 5367632 ~ 5371403 (+)
LOC110535282 LOC106574835 coding upstream 209115 5301374 ~ 5324765 (+)
G218294 NA non-coding upstream 76619 5356558 ~ 5456396 (+)
G218455 NA non-coding upstream 112233 5419666 ~ 5420782 (+)
G218295 NA non-coding upstream 122914 5359700 ~ 5410101 (+)
G218441 NA non-coding upstream 183854 5347526 ~ 5349161 (+)
G218437 NA non-coding upstream 201529 5330703 ~ 5331486 (+)
G217896 NA other upstream 1080459 4451754 ~ 4452556 (+)

Expression


Co-expression Network