LOC110533792 (LOC106605966)


Basic Information

Item Value
gene id LOC110533792
gene name LOC106605966
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5723682 ~ 5725550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964023.1
ggaaaagggggagggggggagaggtatttatgactgtcataaacctacccccaagccaacgtTATGACAAATATTTTGTGTCGATCGTTGACcaacaattaaatccatttcaatcccactttgtaacacaacaaaattgtGAAAAAGTCAAGTGTTGTGAATACTTTGTGTGTAGGACAGTGTGTTAGATGAGGGAAATACGCTTTAGAATCTCATATGATCTGTACTGGAATGACTGGCAGACACGGGACAGTGTCTGAGAAACAGTGAGTCAGGTGAGGAGACAAACATAGAATCCTCCCTGCATACTCTATCCTTAACACAGCAGTCTCAGCATGGACACCCGGTCACTCTGCAGAATGGTGAATCTCCTATTGTGTTTCATGGAAGCCCTGGGCGATGCTTCGAACGATGACGGCTGGTCTATGAAGGTTCAGGCGGAGGTGCGTGCCATGGAGGGCTACCCAGTGGTGCTGCCTTGCTCCTTCACCCACCCCCACCACACGCTGcactcctccctgcaggtggtgtGGCGGATGGGCCACGGCCAGGGCTCTACGGTGCTCTACCACTGCTCCTCTCCCACTGGGGCCAGGACCTGCCAGCCAGGCCCTCAGCAGGACCAGCGTTATCGCCTGGAAGGGAATCCCCGAGAGCACGACCTCTCCTTGCGCATCAACAGCGCCGCCCTGCAGGACAACGGACGCTACTACTGCCGTGTGGAGGTCCCCGGACACGCACATGCCAGCTACGAGGATAAGATGGGCACACGGCTTAGAGTGGAGGCTGCCCCACGAATCCTGGGCCTGTCAGTGGAGGGCAGTGAGGAAGCTGGCTACAGGGCTCAGTGTCGTGTCCAGGGCTCTCCCCTACCTGACATCCAGTGGCTGGGGCCTGACCAGCTCATGGAAGGCTCcgacatctctcccctctcccaggaGTCCCTCGAGCAACATCACACCACCAGTCAGCTCCGGGATGTCCTCCCTGGGCAGCAGTACACATGTAGTGCCTCCAACCCCCTGGGGAAGGACCAGGCCACCCTGTACATGCTGCCCCCCAGGCAGGTGCAGGTCTCTGGGGAGGCCCCTCCGCTGctgctcctgctctccctctccctggggtTCAAGGTGCTCCTGCTGCTGGGGATGGTAGTCTGGCTGCCGCAGGGAGGAGGCCCAGCATGGCTCAGATGCTGGTTCAAATGATACACTGTTTGCATACGCATACACACTAATCCAAATGTTTTAACTTCtcatacat

Function

NR:

description
sialic acid-binding Ig-like lectin 15

GO: NA

KEGG:

id description
K16352 SIGLEC15; sialic acid binding Ig-like lectin 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964023.1 True 1263 mRNA 0.56 3 5723682 5725550

Neighbor

gene id symbol gene type direction distance location
LOC110513540 LOC106585541 coding downstream 133536 5557994 ~ 5590146 (-)
LOC110517595 LOC106585541 coding downstream 231159 5457526 ~ 5492523 (-)
LOC110535504 LOC106574737 coding downstream 283779 5376122 ~ 5439903 (-)
LOC110535340 LOC106574784 coding downstream 368146 5352140 ~ 5355536 (-)
LOC110515205 ci023 coding downstream 388108 5333873 ~ 5335574 (-)
LOC110535565 LOC106606103 coding upstream 29510 5755060 ~ 5766123 (-)
LOC110535576 LOC106586326 coding upstream 53270 5778820 ~ 5790359 (-)
LOC110535585 LOC106586334 coding upstream 64917 5790467 ~ 5797248 (-)
LOC110490516 LOC106574265 coding upstream 71368 5796918 ~ 5799016 (-)
LOC110490524 LOC106574865 coding upstream 75631 5801181 ~ 5806960 (-)
G219566 NA non-coding downstream 7265 5715996 ~ 5716417 (-)
G219565 NA non-coding downstream 7940 5715522 ~ 5715742 (-)
G219564 NA non-coding downstream 10477 5712778 ~ 5713205 (-)
G219563 NA non-coding downstream 12135 5711285 ~ 5711547 (-)
G219562 NA non-coding downstream 15053 5708401 ~ 5708629 (-)
G219570 NA non-coding upstream 878 5726428 ~ 5726635 (-)
G219571 NA non-coding upstream 2029 5727579 ~ 5727829 (-)
G219588 NA non-coding upstream 20886 5746436 ~ 5747033 (-)
G219589 NA non-coding upstream 21741 5747291 ~ 5747612 (-)
G219590 NA non-coding upstream 22065 5747615 ~ 5747847 (-)
G219500 NA other downstream 35391 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 714276 5008084 ~ 5009406 (-)
G219200 NA other downstream 951631 4770350 ~ 4772051 (-)
LOC118944839 LOC106573494 other downstream 1074879 4634932 ~ 4648920 (-)
LOC118944829 LOC106606066 other downstream 1183241 4535483 ~ 4553394 (-)
G219591 NA other upstream 22608 5748158 ~ 5748714 (-)
G219592 NA other upstream 26174 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 604052 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 607418 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 760950 6479543 ~ 6491729 (-)

Expression


Co-expression Network