LOC110535576 (LOC106586326)


Basic Information

Item Value
gene id LOC110535576
gene name LOC106586326
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5778820 ~ 5790359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966782.1
GGAACGCGCCCTTTATTATGCCAATTCAAACATCCGGGCACTTAATCCATTCAAGGCTGATAGAAGATGGCTTCGACAGTGAGAATTACGTCAACTGCAAATACACTAAATTCTATAGAAAATCAAACCAGCGACGAGGATGGCCAGAATTTATGGTCCTCTATTTTGAGTGAGGTATCGACGCGTTCACGGTCAAAATTGCCGTCTGGGAAAAATGTTCTTATTATGGGTGAGACGGGGGCAGGGAAGACCACTCTCATAGCCAAACTGCAGGGAGTTGAAGAATACATGAAAGGCAGAGGACTGGAGTACCTGTACTTTAACGTTCACGATGATGACATCGATGatcaTGCTATGTGTAACGCATGGATTCTGGACGGTGACCTGTACCACAAAGGCCTCCAGAAGTTTGCTGTGTGTGGGGAGAACATGGCCGACACTATGGCCCTGCTGGTAGTGGACATGTCCAGGCCGTGGACGGTGCTGGACTCTCTGCAGAAGTGGGCCAGTGTGCTACGAGAACACATCGACAAGCTCAGAGTCAACCCAGAGACACTGAGGGACATGGAACAGAGATTGGTCCGACAGTTCCAGGAGTACACAGAGCCAGGGGGCGACCACAGCGCCTCTCCCAAGAGGAGGAACCCCGTGGCTGGGGAGGCTGAGGAGGAGTGTGTGGTGCTCCCCTTGGGagagaacacactcacacacaacctgGGCGTGCCTGTTATGGTGGTGTGTACAAAGTGTGACACGTTTCTCAGTCTAGAGAAAGAGCATGACTACCGGGAAGAACACTTTGACTTCATCCAGTCTCACATCCGACACTTCTGCTTGCAGTATGGCGCAGCGCTGCTGTACACGTCAATGAAGGAAAACAAAAACCTAGACCTATTGTATAAATACCTGGTCCATAGATTATACGGGTTTCCCTTTGACATGCTGGCCCAGGTGGTGGACAAAGACTCAGTATTCATCCCATCAGGATGGGATAATGAAAAAAAGGTTGCCATTTTATATGAAAACTTTCAGTCGTTGAAAAGGGAAGACAAGTTTGAGGAGGTTATCGTCCAGCCTCCTGTTAGAAAGTTTGTACATGAAAAGGAACTAGGTGCGGAGGACGACCAAGTGTTTCTGCTAAAGCTTCAGACCCTGTTGTCTAAGCAGCCCCCAGCGGCAGCAGGCAGACCAGTGGACACCACAAACAGAGCACCCACTGGCTCTCCACGGGTGTCAAATCGCTCGGCAACAGCAAACGTGGCCAATGTGATGCCCATGCAACCAGGTGGGCAGACCAGCGAGGGCGTGCTGGCTAACTTCTTCAACAGTCTGTTGAGCAAGAAGACCGGGGAAGGGGGCGGGGCCAACAACACGCCCAGAACAGTCCGGAAGTCAGCATCAAAGGTGGGACTTGACGGTGAGCCAGAGGCGTCCTCCCCGACCTCATCCTCACCCCCAGCCGACATGGAGGAGTCCTGAaccccccaaaccctaaccctccccgccaccacacacccacacacactcgcTGGGTCCTCTCGCTCTTTAGACCCTCGACTGTCAGATGGATCAGAAGCTGGACTGGAAACAGAACAGAGCGGTCTTGGAGCGGTTGCCGTGAGACCGAGCCTTGCATGCCAATCCGTGGAACCACCACCAAAGCAAAACAACATGGACTTACTGGAAACCATCAATGTATTATATAGAAGATAAGCTGACAGGATATTGGAGGGAAATGGAGTAAGTCTGACTCGTTGTTGCTTTATTTTACAGCAACATTAAAATGAGAGGAACTGGATATCTTGCAGGTGGTCTTGAAGCCACTGTGACAAGTGCACATCCTTGATATCACTCTGAGCACTGTGGCTGTCTGCGAGGTGTTTTCAAAGTGGAGGAGATTGATGTTTGCCATTTGTGGAGATGGGTCTTTGGTAGACAGCAGTTCCATTGTTATGTGACGTCATAATGCACTGGAACGCTGATGGATGAAGACTGCTGTACAATCAGGCAGAATGATGGAAATAGTTGGTGTTTTAGTGCTTATAATGGTCATAATCAAGGGTTCTGTTAGAACTCAAGAATCCAGAGTCAAGGATGATGCTCTAAAACCAGGGAAAttatttattctttatttttttaaacttgtgTGTTCATTTGCTTGGTTTGGATTAGGGAATAGGCAGACCTCTGGAGTGTTTTATTGGCATAGGGGAATCATCTATCACAATCTTAAAGTAGTCAAGTTCTCATGAACTATTCAACTGTTAAATCTGCCATTATTCAATAAAGCTGTTTTACTAATCAGGA

Function

NR:

description
cytoplasmic dynein 1 light intermediate chain 1-like isoform X1

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function

KEGG:

id description
K10416 DYNC1LI, DNCLI; dynein light intermediate chain 1, cytosolic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966782.1 True 2307 mRNA 0.49 13 5778820 5790359

Neighbor

gene id symbol gene type direction distance location
LOC110535565 LOC106606103 coding downstream 12697 5755060 ~ 5766123 (-)
LOC110533792 LOC106605966 coding downstream 53270 5723682 ~ 5725550 (-)
LOC110513540 LOC106585541 coding downstream 188674 5557994 ~ 5590146 (-)
LOC110517595 LOC106585541 coding downstream 286297 5457526 ~ 5492523 (-)
LOC110535504 LOC106574737 coding downstream 338917 5376122 ~ 5439903 (-)
LOC110535585 LOC106586334 coding upstream 108 5790467 ~ 5797248 (-)
LOC110490516 LOC106574265 coding upstream 6559 5796918 ~ 5799016 (-)
LOC110490524 LOC106574865 coding upstream 10822 5801181 ~ 5806960 (-)
LOC118944866 NA coding upstream 105906 5837102 ~ 5898231 (-)
LOC110508150 tmem245 coding upstream 117812 5908171 ~ 5925671 (-)
G219593 NA non-coding downstream 12311 5766274 ~ 5766509 (-)
G219574 NA non-coding downstream 24410 5753326 ~ 5754410 (-)
G219590 NA non-coding downstream 30973 5747615 ~ 5747847 (-)
G219589 NA non-coding downstream 31208 5747291 ~ 5747612 (-)
G219588 NA non-coding downstream 31787 5746436 ~ 5747033 (-)
G219627 NA non-coding upstream 43342 5833701 ~ 5833980 (-)
G219630 NA non-coding upstream 47533 5837892 ~ 5838778 (-)
G219680 NA non-coding upstream 186520 5976879 ~ 5981909 (-)
G219592 NA other downstream 26726 5751724 ~ 5752094 (-)
G219591 NA other downstream 30106 5748158 ~ 5748714 (-)
G219500 NA other downstream 90529 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 769414 5008084 ~ 5009406 (-)
G219200 NA other downstream 1006769 4770350 ~ 4772051 (-)
LOC110534138 LOC106605946 other upstream 539243 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 542609 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 696141 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 1139632 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 1158439 6948445 ~ 6952369 (-)

Expression


Co-expression Network