LOC110490516 (LOC106574265)


Basic Information

Item Value
gene id LOC110490516
gene name LOC106574265
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5796918 ~ 5799016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966803.1
CGCAGACTAAAAACAATAGAATGTGTAAATGTTTAAACAACTTGAATGCATCTGCTTTATTATTTTCAAACGTGTGAATACTATTTACGTACCTGAATCATCCGGTGCGTCTTGCATGTCCGTGTCCCCCTCCGTCACTACTCAGGGGGGATTCCCCTATAATACCGGCAAGGGGGTTGAACTCCGGTGTCCTTTCCTCCGCCGTGGCAGAACACTTCTAGGTAATGCATGTTCAGCAGTAGTATCTGTAAACGAGAGGAAGAACCAGCACTGGAGTTGTCAGTGCCTTGTTCTCGGCAGAGTTCTCCCACACGCTCACGAACTGAGAGATGAACCTCTCTGTGGCTATTGTCGTTCTTACTGCGGTCGTCTGCACTTCGGCAGAAATTCCTCATGAGACCGTCTATGTGCAGGGCTGTCTTGAGAATACAAAGGTGGAGGCGGAGGCAGAGCTTCAGGTGGATGGGGAGGAAGTGGTATATGCTGACTTCCAGAGTGGACAGGAAGTTTGGACATTGCCTGAGTTCCTGGGGCCATTCCCAAGCTCCACTGTTCGTAACTTCTACAAGAATGCCGTTAAAGGCAGACGATTGTGTCAGGATGCCTTGGCTCTTTGGATATTAGAAGAAAAGTGTCCACCTGAGGTAAAAGatgccCCTGAGAGCACCATCTACCCCAGGGCTGAGGAGGTGCTGGGGGTGGAGAACACCCTTATCTGCTTTGCCAATCATTTCTACCCCCCGCCTGTCAAAGTCAACTGGACCAAGAATGGCCTGGAGGTGACTGAGGGAGCGTCTCTCAGTCGGTACTATCCTAATAAAGATGGAACGTTCCACCAGTTCTCCAGCCTGAGTTTCACTCCACAGGAGGGGGATGTCTATGCCTGCACTGTGGAGCACACAGCCTTGGAGGACCCCAAAACCAGGTTCTGGGAGTATAAGATACATGAGGTGAGTGGGTCCAGTGCTGGTCCTGCTGTATTCTGTGGAGTGGGCCTGACTCTGGGACTGTTGGGAGTGGCTACCGGAACATTCCTGTACGTCAAAGGACAACAGTTTAACTGAATTGTGACATATATGAAATCTAAAAAATCGTCTTTTGCAGTTGTAGGTAAACAATGTGACAAAATTAGTGGCGTACCGCAGTTGCATATTTTTTGTTGAGGGGGGAAACAGCTAATGTCGTACAATTTGACACATTTTGCCATCGGGCAAAGAAAAATAGGCAGTTTTATAACTAATCTCATGCTAtattgccatgaggc

Function

NR:

description
H-2 class II histocompatibility antigen, A-Q alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966803.1 True 1264 mRNA 0.48 5 5796918 5799016

Neighbor

gene id symbol gene type direction distance location
LOC110535576 LOC106586326 coding downstream 6559 5778820 ~ 5790359 (-)
LOC110535565 LOC106606103 coding downstream 30795 5755060 ~ 5766123 (-)
LOC110533792 LOC106605966 coding downstream 71368 5723682 ~ 5725550 (-)
LOC110513540 LOC106585541 coding downstream 206772 5557994 ~ 5590146 (-)
LOC110517595 LOC106585541 coding downstream 304395 5457526 ~ 5492523 (-)
LOC110490524 LOC106574865 coding upstream 2165 5801181 ~ 5806960 (-)
LOC118944866 NA coding upstream 97249 5837102 ~ 5898231 (-)
LOC110508150 tmem245 coding upstream 109155 5908171 ~ 5925671 (-)
LOC110508233 NA coding upstream 114062 5913078 ~ 5917801 (-)
LOC110508167 LOC106606061 coding upstream 128283 5927299 ~ 5932957 (-)
G219593 NA non-coding downstream 30409 5766274 ~ 5766509 (-)
G219574 NA non-coding downstream 42508 5753326 ~ 5754410 (-)
G219590 NA non-coding downstream 49071 5747615 ~ 5747847 (-)
G219589 NA non-coding downstream 49306 5747291 ~ 5747612 (-)
G219588 NA non-coding downstream 49885 5746436 ~ 5747033 (-)
G219627 NA non-coding upstream 34685 5833701 ~ 5833980 (-)
G219630 NA non-coding upstream 38876 5837892 ~ 5838778 (-)
G219680 NA non-coding upstream 177863 5976879 ~ 5981909 (-)
G219592 NA other downstream 44824 5751724 ~ 5752094 (-)
G219591 NA other downstream 48204 5748158 ~ 5748714 (-)
G219500 NA other downstream 108627 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 787512 5008084 ~ 5009406 (-)
G219200 NA other downstream 1024867 4770350 ~ 4772051 (-)
LOC110534138 LOC106605946 other upstream 530586 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 533952 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 687484 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 1130975 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 1149782 6948445 ~ 6952369 (-)

Expression


Co-expression Network