LOC110520778 (LOC106606060)


Basic Information

Item Value
gene id LOC110520778
gene name LOC106606060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5951557 ~ 5957032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966889.1
TGTCTCATAGGAAGCGACGTGCTCCAGAGGGTGGCATCTGACGCTATTTTGGTTCAACACAGGGGGATTTTGCCGTTGTAAATTAATTGAACATTTGAGCCATCATGTCGATTAGTAGGCTCAGTTGCATATTAGTGTTCGTAAATTGACCACTGTTTCCTGGACACAAGTTGGACAGACTGCATTATCAAGGAGTGAAAGGATGGTGCGGGTGGTGTTTCTCCACCCAGACCTGGGTATAGGTGGTGCAGAGAGGCTGGTGGTGGATGCAGCTGTAGCTCTACGCTCTCGCGGCTGCAGTGTTCAGATCTGGACGGCCCACCATGATCCCACACACTGCTTCTCAGAGACACTGGACCCAGACCTGAACGTGgtgtgtgtgggtgactgGTTGCCCACCAGTGTGTTTGGGTACCTGCATGCCCTGTGTGCCTACCTCAGGATGATCTACGTAGCTCTCTACCTGGTCTTCCTCAGTGGAGTAGAGTATGACGTGGTCTTCTGTGATCAGGTGTCGGTGTGTATCCCAGTCCTGAGGTTGTCTCGTCAGAGGAAAAAGGTTCTGTTCTACTGTCATTTCCCAGACCAGCTCCTGACCCAGAGAGGCTCAGCTCTGAAAAAGCTCTACCGCGCCCCCATAGACAGACTGGAGGAACTCACCACGGGCATGGCTGATATGGTGCTGGTGAACAGTTGTTTCACCGCAGTGGTCTTTAGGGAGACCTTCCGTTCCCTGGATGGGGTCCAGACTGacgtcctctatccctccctcaacacacacagctttgacAGCCCTCCTGAGGAGCAGCTAGAGCAGGGTCTGGGGGGCTTGATCCCTGAAGGTGTGtcctgcctcttcctgtctctgaacCGCTATGAGAGGAAGAAGAGCCTGGGTCTGGCCCTGGAGGGCCTCTCTTCCCTGAAGACCCGCCTCGCCACAGGGGACCAGGCAGGAATCCACCTGGTGGTGGCAGGGGGGTACGACGGCCGTGTTGCTGAGAATGTCCAGCACTACGCTGAGCTGAAGGAGCTAGCAGCACGGCTGGAATTGGAGGACTCTGTCACCTTCCTGCGCTCTCCCTCAGACAGCCAGAAGGTGGCGCTGTTGCGGGGCAGTGCATGCGTTCTCTACACGCCCAGCAGAGAGCACTTTGGGATAGTGCCAGTGGAGGCCATGTACTGCTGCTGTCCCGTCATTGCTGTGAGGTCTGGAGGGCCTCTGGAGAGTGTAGGTGACGGGGAGACGGGCTTCCTGTGTGAGCCCACGGCCGAGGCCTTCTCCCTGGCCATGGAGAAGCTGTTCAGAGACCCCCAGCTCCGCAGGGACATGGGCCAGGCCGGCAGGAGGCGGGTTCAGGAGAAGTTCTCCCTGGAGGCCTTCTCAGACCAGCTGCACGGGTACATCCTCAGGCTGACCCAGTGACACCTCTGCTGGAGCAGTAACTGGGCTGGGGTGCGTTAGCGGAGCAGCTTTCGGTAGAAGTCGCCCTTAGACACATCTAGATCATCTTACCTTCTCTCAATCCCTGCCTAAATCCTAACCAAAGAATGGAGAACTGACCTGAGATCAGCATCTCATTGGTGCATTTTCATCCTACTGCAACTATAGCCAGGTAGAGGTGGATGGGCTAGATGTGTAGGGATAAAATACAGTTACTGAGGACTGGAGGACAGACTGGGGAGGGGGTAATGTAGAGGTACGCTGACTGAGGAGGACTCTAGACAATTAGTCATTGTTCCTCCAGGAGGGGTTACTGAGGACTGGAGgacagactgggggggggggtaatgtagAGGTACGCTGACTGAGGAGGACTCTAGACAATTAGTCATTGTTCCTCCAGGAGGGGTTGCTGAGGGAATGAAGGGATGGAATCTCAGCTCCAATTAACAAAAGAGTAAGGACTTTACCCATACTGCCCCGGGGCCTCTCGTAACAATACCAGCACCGGCCCTTGGttccagaagtgtgtgtgtgagggggtgaCCAAGGGCTTAATGAACAAGAGCTACAAAACCACTAGGATGGATCTGTAGTGTGATAGACGTGCTGCTGTGTGTTTGCGCATGCCACCGAGCGCCATTAGCCAGTTGGCAGCCACAGATCGATAAGCAGGATGTTTGCCACTTCCTCTGCCCTTTCAGACCTTGGTTACTTTTCACAATGAGGGAATGTTTGGCCTGTACATTACTGTTGCTGTCGGTCTCTGGGTTATTAGGAGATGATGCTGTGTGTTggtcattatgtgtgtgtgtgtagcatagAAGGTCATGTTGTCTgctggtcagtctgtgttactAACCTCTAGAAGAGCTCTTATTGACATTCCTCAAGTCTTAATAAAACAGTCAGAGGACACATTTCTGGTTTACCAACT
>XR_005040269.1
TGTCTCATAGGAAGCGACGTGCTCCAGAGGGTGGCATCTGACGCTATTTTGGTTCAACACAGGGGGATTTTGCCGTTGTAAATTAATTGAACATTTGAGCCATCATGTCGATTAGTAGGCTCAGTTGCATATTAGTGTTCGTAAATTGACCACTGTTTCCTGGACACAAGTTGGACAGACTGCATTATCAAGGAGTGAAAGGATGGTGCGGGTGGTGTTTCTCCACCCAGACCTGGGTATAGGTGGTGCAGAGAGGCTGGTGGTGGATGCAGCTGTAGCTCTACGCTCTCGCGGCTGCAGTGTTCAGATCTGGACGGCCCACCATGATCCCACACACTGCTTCTCAGAGACACTGGACCCAGACCTGAACGTGgtgtgtgtgggtgactgGTTGCCCACCAGTGTGTTTGGGTACCTGCATGCCCTGTGTGCCTACCTCAGGATGATCTACGTAGCTCTCTACCTGGTCTTCCTCAGTGGAGTAGAGTATGACGTGGTCTTCTGTGATCAGGTGTCGGTGTGTATCCCAGTCCTGAGGTTGTCTCGTCAGAGGAAAAAGGTTCTGTTCTACTGTCATTTCCCAGACCAGCTCCTGACCCAGAGAGGCTCAGCTCTGAAAAAGCTCTACCGCGCCCCCATAGACAGACTGGAGGAACTCACCACGGGCATGGCTGATATGGTGCTGGTGAACAGTTGTTTCACCGCAGTGGTCTTTAGGGAGACCTTCCGTTCCCTGGATGGGGTCCAGACTGacgtcctctatccctccctcaacacacacagctttgacAGCCCTCCTGAGGAGCAGCTAGAGCAGGGTCTGGGGGGCTTGATCCCTGAAGGTGTGtcctgcctcttcctgtctctgaacCGCTATGAGAGGAAGAAGAGCCTGGGTCTGGCCCTGGAGGGCCTCTCTTCCCTGAAGACCCGCCTCGCCACAGGGGACCAGGCAGGAATCCACCTGGTGGTGGCAGGGGGGTACGACGGCCGTGTTGCTGAGAATGTCCAGCACTACGCTGAGCTGAAGGAGCTAGCAGCACGGCTGGAATTGGAGGACTCTGTCACCTTCCTGCGCTCTCCCTCAGACAGCCAGAAGGTGGCGCTGTTGCGGGGCAGTGCATGCGTTCTCTACACGCCCAGCAGAGAGCACTTTGGGATAGTGCCAGTGGAGGCCATGTACTGCTGCTGTCCCGTCATTGCTGTGAGGTCTGGAGGGCCTCTGGAGAGTGTAGGTGACGGGGAGACGGGCTTCCTGTGTGAGCCCACGGCCGAGGCCTTCTCCCTGGCCATGGAGAAGCTGTTCAGAGACCCCCAGCTCCGCAGGGACATGGGCCAGGCCGGCAGGAGGCGGGTTCAGGAGAAGTTCTCCCTGGAGGCCTTCTCAGACCAGCTGCACGGGTACATCCTCAGGCTGACCCAGTGACACCTCTGCTGGAGCAGTAACTGGGCTGGGGTGCGTTAGCGGAGCAGCTTTCGGTAGAAGTCGCCCTTAGACACATCTAGATCATCTTACCTTCTCTCAATCCCTGCCTAAATCCTAACCAAAGAATGGAGAACTGACCTGAGATCAGCATCTCATTGGTGCATTTTCATCCTACTGCAACTATAGCCAGGTAGAGGTGGATGGGCTAGATGTGTAGGGATAAAATACAGTTACTGAGGACTGGAGGACAGACTGGGGAGGGGGTAATGTAGAGGTACGCTGACTGAGGAGGACTCTAGACAATTAGTCATTGTTCCTCCAGGAGGGGTTGCTGAGGGAATGAAGGGATGGAATCTCAGCTCCAATTAACAAAAGAGTAAGGACTTTACCCATACTGCCCCGGGGCCTCTCGTAACAATACCAGCACCGGCCCTTGGttccagaagtgtgtgtgtgagggggtgaCCAAGGGCTTAATGAACAAGAGCTACAAAACCACTAGGATGGATCTGTAGTGTGATAGACGTGCTGCTGTGTGTTTGCGCATGCCACCGAGCGCCATTAGCCAGTTGGCAGCCACAGATCGATAAGCAGGATGTTTGCCACTTCCTCTGCCCTTTCAGACCTTGGTTACTTTTCACAATGAGGGAATGTTTGGCCTGTACATTACTGTTGCTGTCGGTCTCTGGGTTATTAGGAGATGATGCTGTGTGTTggtcattatgtgtgtgtgtgtagcatagAAGGTCATGTTGTCTgctggtcagtctgtgttactAACCTCTAGAAGAGCTCTTATTGACATTCCTCAAGTCTTAATAAAACAGTCAGAGGACACATTTCTGGTTTACCAACT

Function

NR:

description
alpha-1,3/1,6-mannosyltransferase ALG2

GO: NA

KEGG:

id description
K03843 ALG2; alpha-1,3/alpha-1,6-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966889.1 False 2381 mRNA 0.54 5 5951557 5957032
XR_005040269.1 True 2282 mRNA 0.54 6 5951557 5957032

Neighbor

gene id symbol gene type direction distance location
LOC110508167 LOC106606061 coding downstream 18600 5927299 ~ 5932957 (-)
LOC110508150 tmem245 coding downstream 25886 5908171 ~ 5925671 (-)
LOC110508233 NA coding downstream 33756 5913078 ~ 5917801 (-)
LOC118944866 NA coding downstream 53326 5837102 ~ 5898231 (-)
LOC110490524 LOC106574865 coding downstream 144597 5801181 ~ 5806960 (-)
LOC110535692 LOC106593159 coding upstream 200998 6158030 ~ 6173396 (-)
trnat-cgu-2 NA coding upstream 266765 6223797 ~ 6223869 (-)
LOC110535643 tex10 coding upstream 271880 6228912 ~ 6259816 (-)
LOC110535663 cdh17 coding upstream 342965 6299997 ~ 6325652 (-)
LOC118936454 LOC106605946 coding upstream 371062 6328094 ~ 6332714 (-)
G219630 NA non-coding downstream 112779 5837892 ~ 5838778 (-)
G219627 NA non-coding downstream 117577 5833701 ~ 5833980 (-)
G219593 NA non-coding downstream 185048 5766274 ~ 5766509 (-)
G219680 NA non-coding upstream 19847 5976879 ~ 5981909 (-)
G219698 NA non-coding upstream 61290 6018322 ~ 6021156 (-)
G219700 NA non-coding upstream 66425 6023457 ~ 6023702 (-)
G219671 NA non-coding upstream 66963 6023995 ~ 6024216 (-)
G219701 NA non-coding upstream 68447 6025479 ~ 6025829 (-)
G219592 NA other downstream 199463 5751724 ~ 5752094 (-)
G219591 NA other downstream 202843 5748158 ~ 5748714 (-)
G219500 NA other downstream 263266 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 942151 5008084 ~ 5009406 (-)
G219200 NA other downstream 1179506 4770350 ~ 4772051 (-)
LOC110534138 LOC106605946 other upstream 372570 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 375936 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 529468 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 972959 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 991766 6948445 ~ 6952369 (-)

Expression


Co-expression Network