LOC110508220 (sc61b)


Basic Information

Item Value
gene id LOC110508220
gene name sc61b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5957257 ~ 5963980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966893.1
AATCGTGTCCTTTTTAGACAAGCGTCATCTTTCTTGGATTCCTTCTGAATTTGCAGCGATTTGTGTACATCACTGCTGCCCTTTTGACGTGGACTTCAGTTCGAAGAACAGTTGAAGTTTTCTTCTTTAGTTGAAATCCAAAGTACAACTTAAAATGCCTGGACCAGCATCAAGTGCAACTAATGTCGGTGCAGGGAGCCGATCCCCCAGCAAGACAGTGGCCCCCCGCGCAGCAGGATCCACAGTCCGACAGAGGAAAGCAACGAGCAGTGGCACACGCAGTGCAGGCAGGACCACAGCGTCAGCGGGCGGCACAGGGGGCATGTGGCGCTTCTACACTGAGGACTCACCAGGACTCAAAGTAGGTCCAGTACCAGTGCTGGTGATGAGTTTGCTGTTCATCGCGTCGGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCCTAAACCCCGCCCCATGACCCTTCACCCTCAATCCCTGACCCTGCGGCGCAGCTTCTTAACACATCAGACCTGGACCAAACAACCAACCAACCTGAATCCCCAAACAACACTACTCGCCTGTCCTGGCGGGCGGTACAGACCCAATCTGTCTGGTGTTCTCTTAGAGCAGCAGTCTAGTGTCCAACTCAAACTGAACTGCAGACCACCAGTGTGTTGCCCTTGAACACAGATCATCTAGGACTGAATCCTGACATGAGACTCATCTCCTACTGGCTGTTGTAGGTTCTGTTGATGACAATGGGTGATTCCTCTCCAGTGAGGATCAGGCACCTAGTCCCCTCATCAGGACGTCAGTAAGCATCTATATATTTCAGCCTGAATTGGAACCTGTAGATGTTTTGTTAACATCATTTGGACAACATTTTTATTGTGATATTGTACAATAAATGGACTCAAACAGAA
>TU249269
CACTGCTGCCCTTTTGACGTGGACTTCAGTTCGAAGAACAGTTGAAGTTTTCTTCTTTAGTTGAAATCCAAAGTACAACTTAAAATGCCTGGACCAGCATCAAGTGCAACTAATGTCGGTGCAGGGAGCCGATCCCCCAGCAAGACAGTGGCCCCCCGCGCAGCAGGATCCACAGTCCGACAGAGGAAAGCAACGAGCAGTGGCACACGCAGTGCAGGCAGGACCACAGCGTCAGCGGGCGGCACAGGGGGCATGTGGCGCTTCTACACTGAGGACTCACCAGGACTCAAAGTAGGTCCAGTACCAGTGCTGGTGATGAGTTTGCTGTTCATCGCGTCGGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCCTAAACCCCGCCCCATGACCCTTCACCCTCAATCCCTGACCCTGCGGCGCAGCTTCTTAACACATCAGACCTGGACCAAACAACCAACCAACCTGAATCCCCAAACAACACTACTCGCCTGTCCTGGCGGGCGGTACAGACCCAATCTGTCTGGTGTTCTCTTAGAGCAGCAGTCTAGTGTCCAACTCAAACTGAACTGCAGACCACCAGTGTGTTGCCCTTGAACACAGATCATCTAGGACTGAATCCTGACATGAGACTCATCTCCTACTGGCTGTT

Function

NR:

description
transport protein Sec61 subunit beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966893.1 False 910 mRNA 0.50 4 5957257 5963980
TU249269 True 656 TUCP 0.54 4 5957327 5963796

Neighbor

gene id symbol gene type direction distance location
LOC110508149 LOC106593364 coding upstream 61724 5822391 ~ 5898142 (+)
trnat-ugu-30 NA coding upstream 156308 5800877 ~ 5800949 (+)
cklf7 cklf7 coding upstream 212440 5735806 ~ 5744817 (+)
LOC110535554 LOC106605965 coding upstream 224199 5729917 ~ 5733058 (+)
LOC110534121 slc4a7 coding upstream 251112 5637262 ~ 5706145 (+)
LOC110534158 nr4a3 coding downstream 124525 6088505 ~ 6124399 (+)
LOC110535756 stx17 coding downstream 165271 6129251 ~ 6157940 (+)
LOC110534148 invs coding downstream 210682 6174662 ~ 6228920 (+)
LOC110535707 LOC106574428 coding downstream 284289 6248078 ~ 6254241 (+)
LOC110534143 tmem67 coding downstream 295924 6259904 ~ 6277154 (+)
G218653 NA non-coding upstream 7060 5949998 ~ 5950197 (+)
G218652 NA non-coding upstream 13237 5943756 ~ 5944020 (+)
G218650 NA non-coding upstream 16919 5940114 ~ 5940338 (+)
G218601 LOC106606061 non-coding upstream 26226 5927315 ~ 5931031 (+)
G218663 NA non-coding downstream 12883 5976863 ~ 5981808 (+)
G218664 NA non-coding downstream 12983 5976963 ~ 5981969 (+)
G218668 NA non-coding downstream 19144 5983124 ~ 5986985 (+)
G218678 NA non-coding downstream 52037 6016017 ~ 6016296 (+)
G218681 NA non-coding downstream 60299 6024279 ~ 6024572 (+)
G218558 NA other upstream 208515 5748225 ~ 5748742 (+)
G218487 NA other upstream 323776 5543930 ~ 5633481 (+)
LOC110535491 LOC106606078 other upstream 330679 5533015 ~ 5627436 (+)
G218465 NA other upstream 395986 5460092 ~ 5561271 (+)
G218842 LOC106605951 other downstream 486358 6450338 ~ 6455202 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G20317 NA non-coding CI01000001 null 11123643 ~ 11124829 (-)
bowfin (Amia calva) G79597 NA non-coding CM030129.1 CM030129.1 23337972 ~ 23338206 (+)