LOC110535692 (LOC106593159)


Basic Information

Item Value
gene id LOC110535692
gene name LOC106593159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6158030 ~ 6173396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620871.2
ACGTTACCGTGGTCACCCATCCGTTTCCTGCCTCAGCAGCAGAGTTGTATCGGGAGACAGGGAAGACCGAACAACACCATAACCTCAACCAACTCTACAATGAAACTACCACCAATAGTATCCTCTCTCGAGGTCGGCTTTTTCACGATACTGCTGGTTACTGGTCTCTCCACTCCAGGCCAGGCTGAAATTACCAGTCTAGACACAGGAAACATTGAAGACATCCTCAACAATGCTGGAGTGGCGTTGGTTAATTTCTATGCAGACTGgtGTAGATTCAGCCAGATGCTCCAGCCTATCTTTGAGGAGGCATCGAACATCGCGAGGGAGGAGTTTCCTGATGTCACTCAGGTGGTGTTTGCGCGCGTTGACTGTGATCAGCACTctgaCATAGCTCAGCGGTACAGGATCAGTAAGTACCCTACGTTGAAGTTGTTCCGTAATGGTATGATGATGAAGAGGGagtacaggggtcagaggtcagtcaCAGCCATCGCTGACTTCATCCGCCAGCAGAAGGTCGATCCCATTAAAGAAATACACAGTCTGGAGGAGGTCAACACTGCGGATagggACAGGCGTAACATTATTGGTTACTTTGACCAGAAGGATTCTGAGAACTACCACACGTTTGAGAAGGTGGCCAACATCCTCCGAGACGACTGTGTGTTTCTCGCTGCCTTCGGTGACGTGTCCCAGACAGAGAGGTTCAGTGGTGATAATGTGATCTATAAACCGATGGGGGAGACTGTTCCTGACATGGTGTACCTGGGCTCACTAACCAACTTTGATCTCACCTACGCTTGGGCACAGGACaaatgtgtccctctggtccGCGAGATCACCTTCGAAAACGGAGAGgagcTGACTGAAGAGGGGATCCCATTCCTCATCCTGTTTCACGTGAAGGAGGACACAGAGAGCTTGGAGAAGTTCCAGCACGAGGTGGCACGCCAGCTAATCAGCGAGAAAGGATCTATAAACTTTCTGCATGCGGACTGTGAAAAGTTCCGTCACCCACTGCTGCACATCCAGAAGACGCCAGCAGACTGTCCTGTCATTGCTATAGACTCCTTCAGACACATGTATGTGTACCCTGAGTTCAGAGACATTGAGATCCCAGGGAAGCTGAGGCAGTTTGTTCTGGACCTCCACTCTGGGAAGTTACACAGAGAGTTCCACCACGGCCCAGACCCGACAGACAGCACACCTGGACAGGAGGAGATCGGTGAGGTGGCCAGTAACCCACCAGAGAGTTCCTTCCAGAAGTTAGCCCCCAGTGAGACGCGCTACACACTCCTCAGGGACCGTGATGAACTGTGACCTCAACGACTTTACCACAACCCTGACCTATGACCCACGACCCCATGGCATGCCCCGGAGTCAGTGTCCAGAGTCAGGACAGGCCAGCGGGATGGGACAGCAACACCCCAACTCACCCCCAACACCcttaatggagagagaggaggaagagaggatgaggaagaCCAGAGAGTAGGTTAAATCCAGGACAGCCGTGTTGGAATAACCTATATTTTCATAACTCTTACGtgtacaatttttttattttagataAAAAGGATGAAACCAGAAGAAGAAAGTGGtgtggggttggggggggggggattaggaCAAAAAAAGAAGCAAAGCgttttaacttttatttttggaGCTTGTAAATAATAATAGTGTTTGTGCTGAGTGAGCGTTGGTCTTTGTCATCCTGATCTAAATTAAAAAACAATTTACTTTAGGTTCAAAAACATGTAGCACCCTTTTTTTTGACGAGTGAGATCCCTTGCTCCGGTTGTTCAGTCTCATTACGGTTCTTATCTGTGGGTAGTCCAGCTCAGTCCCGTTTGAGTGAGAGAGGGTTCTGGTCCTGGAGGACTACAGTGTCTCGGCTGCATCTTAATAgttcacccccctctcctcctttcctttaTTTAAACTGATGTGAAAGCATATTTCTGGCAGGTATCCACCATGCTGCTTCCACCTATCCTATGATTTGAAAtaggatgagaggagatgaggaaaggaaTACATTGTAGAGTATTGAGATGCAGCTTTCCTCTCCCTGGTACTAAACTCATGCAACTGATTGGCCAGAGAGCCTATTCACCTAAGTCACGTTCAGGAGGCACAAAATGTTTATAAACAACGGAGGTACTACCATAAACTGTCCAATAGTTAAATGTTTGTTTCCATTGTCTGTCAGAAAAGCATTTTCTTCCTTTTGTACTTGAACGTGCCCCAGATCTGCAATACTGACTCAGACGGTAGTTCCTAAAGGCTGAGAGGTGTCAGTCAGACACTGCTGCTCTAGAGGGCAGGAGGGGAACCTCACACTGAAGGAGAAAAATCAGActctgggctgcatctcaatcctcTGCAGTGTCTTCTTCTCTATCTGCACTGGTCTGACACAGACCAGGCCACGCCCACTTAGCAACAAGTCCAGGTGACAGCAATATGGAAGAAGCTGACCTGGAAAGTATCCTTATTTCACCTGTCACTCAAATCAGTTCAGATGGAGCAAAGAAATGAGACGAGGAGTATTGAGACGCATGCTGTGTGTTTATTTATAGTACTGTGTGTACAGTCCCTCCCTAGAACCCAACAGTACCCTGATCTGACCAATCACGAAGGGAGGGTTAAAGGGGGAGAAATCTCATTTCTAAATCAGTCATCTCggagagggagaaaataaaaCAAGTAAATGAAACCATTTTACAGGA

Function

NR:

description
endoplasmic reticulum resident protein 44-like

GO: NA

KEGG:

id description
K17264 ERP44, TXNDC4; endoplasmic reticulum resident protein 44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620871.2 True 2741 mRNA 0.48 11 6158030 6173396

Neighbor

gene id symbol gene type direction distance location
LOC110520778 LOC106606060 coding downstream 200998 5951557 ~ 5957032 (-)
LOC110508167 LOC106606061 coding downstream 225073 5927299 ~ 5932957 (-)
LOC110508150 tmem245 coding downstream 232359 5908171 ~ 5925671 (-)
LOC110508233 NA coding downstream 240229 5913078 ~ 5917801 (-)
LOC118944866 NA coding downstream 259799 5837102 ~ 5898231 (-)
trnat-cgu-2 NA coding upstream 50401 6223797 ~ 6223869 (-)
LOC110535643 tex10 coding upstream 55516 6228912 ~ 6259816 (-)
LOC110535663 cdh17 coding upstream 126601 6299997 ~ 6325652 (-)
LOC118936454 LOC106605946 coding upstream 154698 6328094 ~ 6332714 (-)
LOC118944879 LOC106605946 coding upstream 159579 6332975 ~ 6333735 (-)
G219733 NA non-coding downstream 96 6156215 ~ 6157934 (-)
G219748 NA non-coding downstream 4082 6153491 ~ 6153948 (-)
G219729 NA non-coding downstream 33277 6099445 ~ 6124753 (-)
G219734 NA non-coding downstream 37213 6106766 ~ 6120817 (-)
G219668 NA non-coding downstream 71881 6085170 ~ 6086149 (-)
G219761 NA non-coding upstream 8385 6181781 ~ 6182031 (-)
G219762 NA non-coding upstream 8773 6182169 ~ 6185965 (-)
G219782 NA non-coding upstream 32473 6205869 ~ 6207103 (-)
G219798 NA non-coding upstream 62802 6236198 ~ 6236600 (-)
G219799 NA non-coding upstream 65573 6238969 ~ 6240513 (-)
G219592 NA other downstream 405936 5751724 ~ 5752094 (-)
G219591 NA other downstream 409316 5748158 ~ 5748714 (-)
G219500 NA other downstream 469739 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1148624 5008084 ~ 5009406 (-)
G219200 NA other downstream 1385979 4770350 ~ 4772051 (-)
LOC110534138 LOC106605946 other upstream 156206 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 159572 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 313104 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 756595 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 775402 6948445 ~ 6952369 (-)

Expression


Co-expression Network