LOC110534148 (invs)


Basic Information

Item Value
gene id LOC110534148
gene name invs
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6174662 ~ 6228920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966930.1
ctctctctctctctctgtaggatccaggatcagggcaggcaggggaCCTGGACGTGCAGCCATGCCCACCAAGGATGCACTGAGCTGGGGAACATCTGCTGAGGCCTCCCCCTAGCACTGCCATGGCATCTGACCCTTCACCTCCAAACACCGCCCCTCTGGGCTCCCAGGTCCACGCAGCCGCCGTCAACGGAGACCGGAGCGTACTCCTCAGAATCATCACAGTGAATCCCTCCCTGCGTGACCGTGAGGACCAGTTTGGGCGTACCCCACTGATGTACTGTGTCCTGGCTGACCGTCTGGACTGTGCTGAGACACTGCTGAAGGCGGGAGCCTCTGTTAAAAAGACTGACCATAGCCAACGTACTGCCCTGCACCTGGCAGCACAGAAGgGGAACGTGCGGTTTCTGAAGCTGCTCCTGTCGCGTCGTGCTGATTGGCTGCAGAAGGATCTAGAGGAGGTAACACCCCTCCACCTGGCGACCCGTCACTCCTCCCCCAAACCCCTGGCCTTGCTGCTCAAACACATAGGACCTGGAGAGGTGGATACACAGGACAAGAACAAGcAGACTGCGCTCCACTGGTCAGCGTTCTATAACAGGCCGGAGCACGTCAGACTGCTCatcaaacacgactccaacattGGCATCCCAGACAGTGAGGGCAAGATCCCCCTACACTGGGCTGCACACAGCCAGGAGCACACCGCTATACACACCGTCCGCTGTatactggagGCGGCTCCTACCGAGTCTCTGTTGAACTGGCAGGACTATGAGGGGCGCACGCCTTTGCACTTTGCTGTTGCCGACGGCAACGAGGCAGTGGTGGAGGTGCTGACATCGTATGAAGGCTGCAGCGTCACGGCGTACGACAACCTGTTCAGAACCCCGCTGCACTGGGCTGCACTGCTGGGACATGCCAAGATAGTGCACTTGTTGTTGGAGAGGAACACGTCAGGCACCATCCCCTCAGACAGCCATGGGGCCACACCTCTACACTATGGAGCTCAGAGCAACTACGCTgaGACGGTGGGTGTGTTTCTGTCCCACCCCTCTGTGAAAGACGAGCCAGATCTGGAGGGCCGCACAGCGTTCATGTGGGCTGCTGGGAAAGGAAGCGATGATGTCATACGCACCATGCTGACACTCACGCCTCACATCGACATCAACATGGCCGACAAGTACGGAGGCACTGcgcTGCATGCGGCCTCTCTGTCAGGTCATGTGAGTACAGTGAGGTTGCTGTTGGAGAGAGGAGCCATAGTGGACAGTCTAGACGTAATGAAACACACGCCTCTGTTCAGAGCCTGTGAGATGGGACACCGCCACATCATCCTCACACTTATCAAAGGCTCTGCTCGTGTCCACCTGGTGGATCTAGATGGACACACTGCTCTGCACTGGGCGGCTCTGGGGGGGAACGCTGAAGTCTGCCAGTTGCTGATGGAGAATGGGATCAGTCCTAACGTCCAGGACCAGGCAGGCAGGACTCCTCTCCAGTGTGCTGCTTATGGAGGGTACATCACCTGTATGGCTGTACTACTCATGGAGAACAACGCTGACCCTAATATACAGGAcaaagagGGCAGGACAGCTCTCCACTGGTCCTGTAACAATGGCTATCTGGATGCTGTGAAGCTGCTGCTGAACTCTAATGCCTTCCCCAACCACATGGAACACAacgaggagaggtacacCCCCCTGGACTACACCCTCCTAGGGGAACACAGTGAGGTGACTCAGTACATGTTGGAGCATGGAGCTCTGTCTATAGCGGCCATCCAGGACATCGCTGCTGCTTCCATCCAGGCCCTGTATAAAGGATACACCGTCCGCAAGGCCTTCACCGAGAGGAAACAACTACTGATGAGACACGAACAGCTACGCAAGGACGCAGCCAaGAAACGCGAGGAGGAGCAGCGGAGGCGGGAGGCGGAGCAGCAAATCTCATTGGccagaacagagaaacagaggatgtTATTGGCCCGCGCTGAGCAGGAGCAGCTGTCATTGGCTGAGACTATGAAGGAACTGTCAGTgtatgagagagaggcagggggcggGGCTAATACAGCCTCCAAAGCAGAACAGACCAATAGCaaagaggagacatggaaacatagAGcaCATAGAAGCAGACCCTccaagagagggaaggaggcacAGCCAGCCAAAGGACCTGACCCCGTGGTGACCCCTCACCCCTCAGTGACCTCTGACCCCATGCCCCCTGCCCAGGGGTCTAGGGTCAGGGAGCGTTTCTCTCCTGCAGGCTGCAGCCGACCCCCCAGCCCAAAACACAGACCTCCCACCACACCCAGGACCAAGAGACTCAcctctgcaaacacacacactccctccaacacacacactccttccaaAACACACACtacctccaacacacacactccttccaacacacacactccttcccacacacacactctatccaACACAGACACGTCTACTCGCCCCACCATGGATCAAGAAGCCCCCAGCACCAGGGAACGCACCCCTAGAagcaagagagacacacacaccaacacacacaacccCAGACACAGAACACGCCCTGCCACAGACCATACCACCTCCTCCAGCAAGAACCACACTAaagcctccacacagtcacaccGCCCCAGCAGCAAGCccagggagggggacagagaccaGGCTGCCTGCACTATCCAACAAGCCTGGAGGAGgttcCATGTGCGATGCAGATTGAGGGAGGCTTTTGGTGCTGGGAAAAGAGTGGAGCCACCTGAGGTCGCCTCCCTCCTGATCCAGCTGCTCTGGGATAGGCCGGCTTTCCCTGGTCACACCCCTATTAGGACCAAGCCTGAGGCCACAGTTCCACCCACCAAGACAGCAGCCAAGAGCTCAGTGCTGCAAAGCATCTATGGAGGTTCTGTGGCCCGAAGGGGGCGCTCTCTCGAGGGTTCTCAGTCTCAGATACTACTGGACCTGCCACTACGCACACACAGCCAATtgagcagtgtggagtgtgtgCACCTGTGTGATGCAGTGGGGCAGGCCAGGCAGTACTCCTACCACCTCAGACCCCACAGCGCTGGACAGGGCCGGGGGAAACACTGAcgactacacacacaccctgcatgtGTACTTCGTGGCTCACTTGGTAGCGCATGGTGCTTCTACTGCTAGAGGactgggttcgattcccaggacgagccatatgtaaaatgtatgcacgtgTGACTGAGTTGCTTTGGATataagcatctgctaaatggcgcacacatatgtgtgtgttgtcttgaAATTACTTACCCACCTTATCATGGTGGAGTTATTGGCCAGATTGTAAACAGAGCATCTATATACTGACAAGAGGGGGGGCCCCAATGGTGTAACTTTATGAATATGTTTCTGCAGAGGTGGGAACTCTTGAGGGCAGGTTTGCGTGTGAACAATGCTGATATAACTGACTTCTCAGAGATGCCACGTGTCCACTTATCAGTACAGTTGTAATAATCGAAATATTACAAAATGTATATTAAGTCAAATAATCAGACCAATTGGGGATTTTTTATATGGTGGGCAATGAGCGTCAAATTGATCACCATATAAAAAATCCCCAATTGGTCTGTGTCATGCTGTATTTTCAGGCAGAGTAATCCCTCTTGCATAGCCTTTTCCTCTCAGATTGTACTCTCTGTGCCCAGTATTAACCATGGAGGAGTTCTTGGCCTGATTGTTTATACTACTGGACACAGGAAGAGAGGACAAAGTTATGAGACCTCACAGTCATGACCTCACAGGGCGGAGTTAAGTCAACCGACATGGTATGTGTGCAAGATAATTTCAACCATACagaaaatgaacacacacacacagagataaccTTTCCTCCCATGTGGAGAATGAGGCAGTCTGTCAACAGCCGGTCATACAGCCAGCCCACCTGCAGACGCTGACACACACGCCTGCTTGCAGACACACACGCTTCCCGTCAGCCATAACACTTGTACTAGGTTGTAGTCAACTCTACCTCAGTATCTACCTGAGCAGGTTCCCACAGGCATGCATGCCCCTCCCACTTTCCCCCCTCAGCCATAATAGTAGGTACACAAGGTCATTTAGGTCCAGAGGGTACACGTGTACCTGTGCTTTCTCTGTAGGACTCTGGAGGGGGGTATATTTATGCATTTTATACACACTCCGTTACTCTAATTCTACATTATACATCACTTCCTGCCTGAAATAGTTGACTTAAAGTTAGCCAGATGTTTGTGGCACCTCATCAAGGGGAACTGTCACTTAAGATAGAAACTGCGTTTCAGTGTCAATGCTGTTCTCTGATGCACTACTGTTGAAACACTATCAGATGTCAAGGCTTTACATTTATGAATGAATACCAACCTCAATGTTAATGTCCATGTTTTTCTACTCTTTTAGAAAACTTCTCAAATAAATACATTGAGTTTCAGTGA
>TU249367
CTGGCAGGACTATGAGGGGCGCACGCCTTTGCACTTTGCTGTTGCCGACGGCAACGAGGCAGTGGTGGAGGTGCTGACATCGTATGAAGGCTGCAGCGTCACGGCGTACGACAACCTGTTCAGAACCCCGCTGCACTGGGCTGCACTGCTGGGACATGCCAAGATAGTGCACTTGTTGTTGGAGAGGAACACGTCAGGCACCATCCCCTCAGACAGCCATGGGGCCACACCTCTACACTATGGAGCTCAGAGCAACTACGCTgaGACGGTGGGTGTGTTTCTGTCCCACCCCTCTGTGAAAGACGAGCCAGATCTGGAGGGCCGCACAGCGTTCATGTGGGCTGCTGGGAAAGGAAGCGATGATGTCATACGCACCATGCTGACACTCACGCCTCACATCGACATCAACATGGCCGACAAGTACGGAGGCACTGcgcTGCATGCGGCCTCTCTGTCAGGTCATGTGAGTACAGTGAGGTTGCTGTTGGAGAGAGGAGCCATAGTGGACAGTCTAGACGTAATGAAACACACGCCTCTGTTCAGAGCCTGTGAGATGGGACACCGCCACATCATCCTCACACTTATCAAAGGCTCTGCTCGTGTCCACCTGGTGGATCTAGATGGACACACTGCTCTGCACTGGGCGGCTCTGGGGGGGAACGCTGAAGTCTGCCAGTTGCTGATGGAGAATGGGATCAGTCCTAACGTCCAGGACCAGGCAGGCAGGACTCCTCTCCAGTGTGCTGCTTATGGAGGGTACATCACCTGTATGGCTGTACTACTCATGGAGAACAACGCTGACC

Function

symbol description
invs Predicted to enable calmodulin binding activity. Acts upstream of or within several processes, including morphogenesis of an epithelium; opsin transport; and urogenital system development. Located in cilium. Used to study ciliopathy. Human ortholog(s) of this gene implicated in nephronophthisis 2. Orthologous to human INVS (inversin).

NR:

description
inversin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966930.1 False 4459 mRNA 0.53 18 6174662 6228920
TU249367 True 803 TUCP 0.57 6 6207503 6210967

Neighbor

gene id symbol gene type direction distance location
LOC110535756 stx17 coding upstream 16722 6129251 ~ 6157940 (+)
LOC110534158 nr4a3 coding upstream 50263 6088505 ~ 6124399 (+)
LOC110508220 sc61b coding upstream 210682 5957257 ~ 5963980 (+)
LOC110508149 LOC106593364 coding upstream 279129 5822391 ~ 5898142 (+)
trnat-ugu-30 NA coding upstream 373713 5800877 ~ 5800949 (+)
LOC110535707 LOC106574428 coding downstream 19349 6248078 ~ 6254241 (+)
LOC110534143 tmem67 coding downstream 30984 6259904 ~ 6277154 (+)
LOC110535685 LOC106606054 coding downstream 48554 6277474 ~ 6290170 (+)
LOC110489435 LOC106570746 coding downstream 148368 6377288 ~ 6399616 (+)
LOC110508031 esrp1 coding downstream 197214 6426134 ~ 6448961 (+)
G218689 NA non-coding upstream 73316 6047450 ~ 6101346 (+)
G218681 NA non-coding upstream 150090 6024279 ~ 6024572 (+)
G218678 NA non-coding upstream 158366 6016017 ~ 6016296 (+)
G218780 NA non-coding downstream 8649 6237569 ~ 6238625 (+)
G218783 NA non-coding downstream 36128 6265048 ~ 6265311 (+)
G218784 NA non-coding downstream 37337 6266257 ~ 6266504 (+)
G218791 LOC106605873 non-coding downstream 74346 6303266 ~ 6305269 (+)
G218793 NA non-coding downstream 76847 6305767 ~ 6307238 (+)
G218558 NA other upstream 425920 5748225 ~ 5748742 (+)
G218487 NA other upstream 541181 5543930 ~ 5633481 (+)
G218842 LOC106605951 other downstream 221418 6450338 ~ 6455202 (+)
LOC110520771 fam171a1 other downstream 376402 6560989 ~ 6607009 (+)
LOC110507851 acbd7 other downstream 395664 6624575 ~ 6631601 (+)
G218769 NA non-coding upstream 6105 6200927 ~ 6201398 (+)
G218766 NA non-coding upstream 12893 6193739 ~ 6194610 (+)
G218763 NA non-coding upstream 19176 6186304 ~ 6188327 (+)
G218759 NA non-coding upstream 26292 6180989 ~ 6181211 (+)

Expression


Co-expression Network