LOC110535643 (tex10)


Basic Information

Item Value
gene id LOC110535643
gene name tex10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6228912 ~ 6259816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966940.1
AGACAGCTTAGCTAGTTGTCGTATCAAAGAGAAAGGCCCATGTTTGTAAAGAAACAGCACGAGCTTTGTTTTGCTGATTGACTGTCTTCAAAAGCTACATTCGGCGCGGGAAGGCTACTGCATGCACAATTATTTCTGACAGTGTCAACACACATAGTCCTATTCTGCAGAGATGACCAAGTgcaagaagaagaagaggcagGATGACTTCCAGAAGGTCAAGCTGAAGGTGGGGAAGACTAAGCCTAAAGCTGACAACGCCACCAACATCAACTTCCGCACCAAGGGAATTAACCTAACTGAACAGCTGAAGAAAGATGCTAATGCACCCACCACACACCGGAAGCTCAACATCAAGGACCTGTTGTCCCAGCTGCATCACTACAGTGGTACAGTGAAACAGGGAGCTCTTGTGGGACTGAGGGAGCTGCTGACCCTTCACCCCTCAGAGTTAGACCAACACCTCTCCAGTCTGCTCAGCGAGGCTGCTGCCGTCTTCACAGACAAGGACCCGAATGTACGGATGTCTGCCACACGCCTGCTCAGGTTCATAGCCCAGAGTGTGCCAGCGGAGCGGACGTCTCcattcttccctctcctctctgcccacCTCTCCTGTGCCATGACCCACATTGAGACGGGTATCCAGGAGGATGCCCTGAAAGTCCTCGACGTTTTGCTGGACCACTATCCTGCCCTGCTGGCCGCTCGTCCCGCCCTGTTGCTCACCAACTTCCTGGAGCTGATCTCACACAAAAGTACCGGGGGCGGGGCAAGGAAGGGgcaggaggggaaggggaggagctGGGCCTTGTCAGTCAACCCTAACAGGAACGTGACTGGTCAGCAGTGGAGACTCACAGTGCTGCTCAGACTGGGGCGTTTTCTTCAGGCGGTAGTTGAGGAGAGGCGAGCGGAGGAGGGGGTTGCATGTGTCTCAGGTGACATGTTCAGTGTTTTGAATGGACAAGGAGGAGCTAACGCACCTTTGGAGCTCAACTGGGAGGAGCTTACCTACAGAAAAGGTGGATTTCAGGTGTTTGAACATTCAGGAGCCATGCCCACTCCGCATTCCACCTTCAAACTCAGGCCGGCGActgagcctggggctggggtGAGTGAGGGGCTGGGCACAGGGGAGGCTGTACGGGGCTTCGCCTCCACCCTGGTGCCCCTTCTACTAGACGTCTGGGTAGAGGCTAGTGCCAGCGACCGGAGCAAGACTGACAGTGCTCATCTCCTCACCCCCGACGCCATGTCACTGATGTACCAAGTCCTCTCCATACTACAGCTGCTACGCAAGCTGGCGCCACAGAGAGAATACCAGGATacactggATGTGTGGTTTCGCAGTGAGTACCTGGGGGATTTTAAGCAGCACTTCATGAAGAACTTCCCCTATGGAAATCTGGACACCCCTAAACAAAGGCGGAAGACAGACCCCAAGAGGAGTAAGCAGTCCACTACAATCCCAGGGCAGACAGTGGAACCCTTGGCTCTGAACGTGCTGCTCTGCCAGGtcatggtttccatggttaccCTCAGCCAGAGGGAGGGGCAAGCCCAGGAGCCCGATGCTGAGTGGCTGATGCCTCTGAGAGGGTTTGTCCAAGAGACTCTGTCCAGTGGGGCCAAGCTGAGCCAAAGACACCTACATACACTCCTGGAGACTGTCTGGAGAATGGTCATCACACAACGCAGCAGGGCGGTGACGGAGGATCTGTTACAGGCGGTGTATGTTCAGTACCAGCAGATGAACCTGAATCTGCAGACCAGAACACTGCTACTTTCCTTCTACAGCAGACTGTACCTACaggaacacaaccacacacacatcgccagGAGTAGAGTGTTGTCTCTGTGGCTGGCTGCTCTACCGCTCCAGTTGTCCCAGCTGGGCCACCGTAACCCTGCCCTCTCAGACAGGCTCCTGCTCTCCATCCAGGCTGCTGCCTCCCGCGGGAACAAGGCCCTGCTGAACTCCCTACATACGCATGCATGCAGGCTCTAcgacccaCAGGAGGGCAGTGTGGTATTGTTACCGGCTGAATCTCAGCAGCGATTGGTCCAGCTACTCTACTTCCTGCCTGTGATGTCACAGGGTCTGTTGGCCAATCTGAGTCGCTGCTGCACTGCGGGACGCGTCTCTGCTGGCCTGGCTGCCTCCCTCATACGCATCATACACCTCAGGTCCTCTTTGAGTGGTTGGTCAGTAGGGTCTCAGGACGCGACCCTGCGTGATGTTGACTACATCAGCTTCCTGTTCTCCACCCTCACAGggTTTTCGTCTGATGAGCTGGCCACCCTGCAGGAGGCTGGGGATGAGagcgtgctccctccctctcccctctcccccctcagtctctaccccacccccctgGAGCAATTCACACACCACTGGGACGTGGTGGAGGAAGTGTGCCACTGCTTGGAGACGCTGGGGTCTCGTTCACAGTGCTTTGACGTGCTGCAGAACGGCATCTGCAAGAACCTGaCTGGTCTGGCTGTGGTACCAGACAGTATGGCAGCAGGGTTGTTGAGAGCGGTGGCCAGACTGTTGGACCTGTCCTTCCTCCCCAGTGAACCTCTACTGAGGTTCCTGTCCCGCTGCTGCCTCAGCCTACTGTCTCTGCTACTGACCCTACAGCAGGACACCACCTCAGAGAACAACCACAAGAGgGAGGCAGTGTGGGGCGCGTGTGTGGCAGCGCTGAGCAGCATTCCCCGGCTGTTGCGGTTGGTTCTGCAGTCGTTGCGAGTCAGGGACCTGTGTGAGGAGGAGCTGCCTCAGCTGGCCCAGATACTGTCCCTGCTGCTGCAGCACACAGCGCTACGCAACCACATGCTGGCAAACGCAactctactacaacacattatacaGGACCTCAcgaggtaCTGTCGAGGTGAGTCCAAGGAGCAGTGGATGACTGACCTGCTGTACTGCTACAGCGTAACCATGGCGACTCACCGGGGAAACCTGGGGCTCCGCGACATCTACTGACCTAGGCCCCAAACCAACCACAGGCCCATCTTACTGTTCTCTGTCCACTGTCTAACCCACGGAGGTCATAGTGTCTGAGGGCTTTtgctccacccttgtacttgatggATGATTTATGGTCACTAAtgagtaaggaactcccctcacctgatcgtcttaattgaaaggaaaaaaggaaaacctgcagacactcggtcgtctgtggaatgagtttgacacccctggtctaacCTGACATCCTGTCTTCCCCATcggtctctctgtcctcctcattCAGCTTTTATTCCTGGCCCAAAACCAACTGTCTTCTTCATATTGCTAAATATTGTGGCCACCACTAGTCCTGGAGAGATAAAAGGATGTACAGGCTTTAGTTACAGTGCAGCACTAACATACTTCTTTAACTAATCACCTGAATCAGTGCTGGGTTGGAACTAACACCTGCACACACTGCATCTCCAAGACTGAATTAAAGGATTTCTCAACTGATTACTGTTTTTATTACAAAAAGAGAAAATAAAGCTGGAGTCACTGAAA
>XM_036966947.1
GGCAGCTCGTGCACAGTTAATGTGGTCGGGCTCTGAAAGGGACAACATTTCAACCTATCAGCATCACACCAAATTACGATATAAAAGGTTAAAATACAGAGGAGCCAGAGTTATGGTTTTCACCTGATAGTCCTATTCTGCAGAGATGACCAAGTgcaagaagaagaagaggcagGATGACTTCCAGAAGGTCAAGCTGAAGGTGGGGAAGACTAAGCCTAAAGCTGACAACGCCACCAACATCAACTTCCGCACCAAGGGAATTAACCTAACTGAACAGCTGAAGAAAGATGCTAATGCACCCACCACACACCGGAAGCTCAACATCAAGGACCTGTTGTCCCAGCTGCATCACTACAGTGGTACAGTGAAACAGGGAGCTCTTGTGGGACTGAGGGAGCTGCTGACCCTTCACCCCTCAGAGTTAGACCAACACCTCTCCAGTCTGCTCAGCGAGGCTGCTGCCGTCTTCACAGACAAGGACCCGAATGTACGGATGTCTGCCACACGCCTGCTCAGGTTCATAGCCCAGAGTGTGCCAGCGGAGCGGACGTCTCcattcttccctctcctctctgcccacCTCTCCTGTGCCATGACCCACATTGAGACGGGTATCCAGGAGGATGCCCTGAAAGTCCTCGACGTTTTGCTGGACCACTATCCTGCCCTGCTGGCCGCTCGTCCCGCCCTGTTGCTCACCAACTTCCTGGAGCTGATCTCACACAAAAGTACCGGGGGCGGGGCAAGGAAGGGgcaggaggggaaggggaggagctGGGCCTTGTCAGTCAACCCTAACAGGAACGTGACTGGTCAGCAGTGGAGACTCACAGTGCTGCTCAGACTGGGGCGTTTTCTTCAGGCGGTAGTTGAGGAGAGGCGAGCGGAGGAGGGGGTTGCATGTGTCTCAGGTGACATGTTCAGTGTTTTGAATGGACAAGGAGGAGCTAACGCACCTTTGGAGCTCAACTGGGAGGAGCTTACCTACAGAAAAGGTGGATTTCAGGTGTTTGAACATTCAGGAGCCATGCCCACTCCGCATTCCACCTTCAAACTCAGGCCGGCGActgagcctggggctggggtGAGTGAGGGGCTGGGCACAGGGGAGGCTGTACGGGGCTTCGCCTCCACCCTGGTGCCCCTTCTACTAGACGTCTGGGTAGAGGCTAGTGCCAGCGACCGGAGCAAGACTGACAGTGCTCATCTCCTCACCCCCGACGCCATGTCACTGATGTACCAAGTCCTCTCCATACTACAGCTGCTACGCAAGCTGGCGCCACAGAGAGAATACCAGGATacactggATGTGTGGTTTCGCAGTGAGTACCTGGGGGATTTTAAGCAGCACTTCATGAAGAACTTCCCCTATGGAAATCTGGACACCCCTAAACAAAGGCGGAAGACAGACCCCAAGAGGAGTAAGCAGTCCACTACAATCCCAGGGCAGACAGTGGAACCCTTGGCTCTGAACGTGCTGCTCTGCCAGGtcatggtttccatggttaccCTCAGCCAGAGGGAGGGGCAAGCCCAGGAGCCCGATGCTGAGTGGCTGATGCCTCTGAGAGGGTTTGTCCAAGAGACTCTGTCCAGTGGGGCCAAGCTGAGCCAAAGACACCTACATACACTCCTGGAGACTGTCTGGAGAATGGTCATCACACAACGCAGCAGGGCGGTGACGGAGGATCTGTTACAGGCGGTGTATGTTCAGTACCAGCAGATGAACCTGAATCTGCAGACCAGAACACTGCTACTTTCCTTCTACAGCAGACTGTACCTACaggaacacaaccacacacacatcgccagGAGTAGAGTGTTGTCTCTGTGGCTGGCTGCTCTACCGCTCCAGTTGTCCCAGCTGGGCCACCGTAACCCTGCCCTCTCAGACAGGCTCCTGCTCTCCATCCAGGCTGCTGCCTCCCGCGGGAACAAGGCCCTGCTGAACTCCCTACATACGCATGCATGCAGGCTCTAcgacccaCAGGAGGGCAGTGTGGTATTGTTACCGGCTGAATCTCAGCAGCGATTGGTCCAGCTACTCTACTTCCTGCCTGTGATGTCACAGGGTCTGTTGGCCAATCTGAGTCGCTGCTGCACTGCGGGACGCGTCTCTGCTGGCCTGGCTGCCTCCCTCATACGCATCATACACCTCAGGTCCTCTTTGAGTGGTTGGTCAGTAGGGTCTCAGGACGCGACCCTGCGTGATGTTGACTACATCAGCTTCCTGTTCTCCACCCTCACAGggTTTTCGTCTGATGAGCTGGCCACCCTGCAGGAGGCTGGGGATGAGagcgtgctccctccctctcccctctcccccctcagtctctaccccacccccctgGAGCAATTCACACACCACTGGGACGTGGTGGAGGAAGTGTGCCACTGCTTGGAGACGCTGGGGTCTCGTTCACAGTGCTTTGACGTGCTGCAGAACGGCATCTGCAAGAACCTGaCTGGTCTGGCTGTGGTACCAGACAGTATGGCAGCAGGGTTGTTGAGAGCGGTGGCCAGACTGTTGGACCTGTCCTTCCTCCCCAGTGAACCTCTACTGAGGTTCCTGTCCCGCTGCTGCCTCAGCCTACTGTCTCTGCTACTGACCCTACAGCAGGACACCACCTCAGAGAACAACCACAAGAGgGAGGCAGTGTGGGGCGCGTGTGTGGCAGCGCTGAGCAGCATTCCCCGGCTGTTGCGGTTGGTTCTGCAGTCGTTGCGAGTCAGGGACCTGTGTGAGGAGGAGCTGCCTCAGCTGGCCCAGATACTGTCCCTGCTGCTGCAGCACACAGCGCTACGCAACCACATGCTGGCAAACGCAactctactacaacacattatacaGGACCTCAcgaggtaCTGTCGAGGTGAGTCCAAGGAGCAGTGGATGACTGACCTGCTGTACTGCTACAGCGTAACCATGGCGACTCACCGGGGAAACCTGGGGCTCCGCGACATCTACTGACCTAGGCCCCAAACCAACCACAGGCCCATCTTACTGTTCTCTGTCCACTGTCTAACCCACGGAGGTCATAGTGTCTGAGGGCTTTtgctccacccttgtacttgatggATGATTTATGGTCACTAAtgagtaaggaactcccctcacctgatcgtcttaattgaaaggaaaaaaggaaaacctgcagacactcggtcgtctgtggaatgagtttgacacccctggtctaacCTGACATCCTGTCTTCCCCATcggtctctctgtcctcctcattCAGCTTTTATTCCTGGCCCAAAACCAACTGTCTTCTTCATATTGCTAAATATTGTGGCCACCACTAGTCCTGGAGAGATAAAAGGATGTACAGGCTTTAGTTACAGTGCAGCACTAACATACTTCTTTAACTAATCACCTGAATCAGTGCTGGGTTGGAACTAACACCTGCACACACTGCATCTCCAAGACTGAATTAAAGGATTTCTCAACTGATTACTGTTTTTATTACAAAAAGAGAAAATAAAGCTGGAGTCACTGAAA

Function

symbol description
tex10 Predicted to be located in nucleolus. Predicted to be part of MLL1 complex. Predicted to be active in nucleus. Orthologous to human TEX10 (testis expressed 10).

NR:

description
testis-expressed protein 10 homolog isoform X1

GO: NA

KEGG:

id description
K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966940.1 False 3538 mRNA 0.55 17 6228912 6247838
XM_036966947.1 True 3511 mRNA 0.55 17 6228912 6259816

Neighbor

gene id symbol gene type direction distance location
trnat-cgu-2 NA coding downstream 5043 6223797 ~ 6223869 (-)
LOC110535692 LOC106593159 coding downstream 55516 6158030 ~ 6173396 (-)
LOC110520778 LOC106606060 coding downstream 271880 5951557 ~ 5957032 (-)
LOC110508167 LOC106606061 coding downstream 295955 5927299 ~ 5932957 (-)
LOC110508150 tmem245 coding downstream 303241 5908171 ~ 5925671 (-)
LOC110535663 cdh17 coding upstream 40181 6299997 ~ 6325652 (-)
LOC118936454 LOC106605946 coding upstream 68278 6328094 ~ 6332714 (-)
LOC118944879 LOC106605946 coding upstream 73159 6332975 ~ 6333735 (-)
LOC110534138 LOC106605946 coding upstream 78076 6329602 ~ 6349701 (-)
LOC118944880 rad54b coding upstream 94279 6354095 ~ 6377182 (-)
G219782 NA non-coding downstream 21809 6205869 ~ 6207103 (-)
G219762 NA non-coding downstream 42947 6182169 ~ 6185965 (-)
G219761 NA non-coding downstream 46881 6181781 ~ 6182031 (-)
G219733 NA non-coding downstream 70978 6156215 ~ 6157934 (-)
G219748 NA non-coding downstream 74964 6153491 ~ 6153948 (-)
G219802 NA non-coding upstream 3561 6263377 ~ 6263852 (-)
G219804 NA non-coding upstream 11138 6270954 ~ 6271897 (-)
G219807 NA non-coding upstream 12678 6272494 ~ 6273224 (-)
G219808 LOC106606054 non-coding upstream 28283 6288099 ~ 6290161 (-)
G219810 NA non-coding upstream 30802 6290618 ~ 6293890 (-)
G219592 NA other downstream 476818 5751724 ~ 5752094 (-)
G219591 NA other downstream 480198 5748158 ~ 5748714 (-)
G219500 NA other downstream 540621 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1219506 5008084 ~ 5009406 (-)
G219200 NA other downstream 1456861 4770350 ~ 4772051 (-)
G219820 LOC106605946 other upstream 73152 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 226684 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 670175 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 688982 6948445 ~ 6952369 (-)

Expression


Co-expression Network