LOC110535707 (LOC106574428)


Basic Information

Item Value
gene id LOC110535707
gene name LOC106574428
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6248078 ~ 6254241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966978.1
GCCAATCACCATCTTTTGCACGAATGCAGCAAGGCTACAATCCAAGGCCATTTTATGGCGCCCCACCACAGAAGCGGTTCAGGAACGCTAATGGAGGGGCTAACAACAGGAGAAAGCAGCCTAACTTCTCTGCTGACATAGTGTTTACCACCAAGGCGGGAAATGTACAGACCATCCCCTCCTTGACCAAACAGTTGAAGGCCATCACTGGTGAGACTGTCATTGgtcttcagtatgtgtggGAGTACCGGAGCCCTAGTAAGTCAGTCCCACCCCATTACCAGTGTAAACTCTGCAAGAAGGTAAGCCGTCTGCAGACTGACATGCTGGCTCACATCAAGGGCTGGAAGCACTCCTTCAGATACAtgAAGCAAAATCATTCTGCCAAGATGCCCTTTAAGGAAGATGCTGCCACAAAGGACCATGAAGTGAGGAAGAAGGTGAAAGAAGCAGCAGCAGAGCTGGAGAAGGCAGAGGGCAGGGGACAGCTAAAGGTGATTCTGAAGGAGCCCAGTGAGGTCCAAGCATTTGCAGGACTACGTTCAGCAATCCCCAACATGGGGCCACCAGGAGGGATGGGAGGGCCAGGAGGAATGGGAGCTAGAGGACCAAAAccagGTGGCAGGTTTGCAGAGCCTCTGTTCCCAGGGGAGTTCCCTCTCCAAGGCGGCAGCCTCAACTACCCCATGGGTGATATGGGGGGCTACTCTGACCCCCTGCCTCGCTCCACGGCTTTCCAGAAAAGGGACATGAGCTTCCGAGGCTACCCTGACAATACGGGGGGGCAGAGGCTAGGGGGTTCAGCCGATGGCTTTGGACTgggagggggaagggatggaAGCTTTGGCCAGGAGGGGTTGTTGGGGGAGAGTCCGGGAAGCCGCTACCCTGATGAGTTCAGAGGGGGACAGATGGGAAGTGGATCCGGCCAAGGGTTGATGGGAGCTGTACCTGAAACCAGCAGCCTTCCGACCACGCTACTCAAATACCTGgACAATTTCCAGATCGAGAACGAGGGTGATGCTCAGATCGTGCTGAAGGTGACACAGAAGCTGACAGATGTCCTAATGGACTACAGACTTAGGAGTGTTTCCTCGCAGGGTCCTAGTATGAAGAGCGGTTTGTCGCTGGGCTCCATGAGCTACTCCGACTCTCCCAGAATGTCTAGCGGTAGTGACCGCTTCTCAGGTGGCTTCTCTGGGAACCTCTCTGGCCCTTCCAGATACTGATGGTCTATCCAGGTACTACAACTAACTGATCCATCCCCACTTGACACATCCACCTTCCTGGGGTAACCCATCCTCCGCCTCACCCCCAAGATATACCCTGAGTCCATGGGGTCTGCAGCTGTCTGTCTAGCCactgaacatttttattttatataattttCCTTCAAAGCAGAAACTGATACAATTGTGTACTTATTAGTGCAGACTTTGTTTTTACCTAACTTCTTTTGACATGCATAGGTTGGACTAAAGTTTGACTTTTAGTTTTAACCATTGTCTGTATTCATGTGATTTTGGCATTTATTTTACTGTGGTTTCTTGGATAAATCTTGTCTGTTTAGAAATTAAGTGTTTGATAGAAAACAAGTGTAATGTTTAGGGAAAGAGATGTTTGGCGGTAAATGGGTTACTGATGTACTGACTGCTGTTTTGAGTTGGGCTTGTCATCGCTGTTTTTCTCCACACCTGGCTTCActtgtgggatcgtctgagaccagccaccctgacagctgatgaaactgagtatttctgtctgtattaaagcccttttgtggggggggAAAAATATTCTGAGTGGCTGGGCCAGAACGGAATCCCAGAATGTgtggtgcatttggaaagtattcagactgactttttccacatttttcttacgttacagctttattctaaaatgtattaatctacacacactactcagtaagtaaaaacaggtttttggaaatgtttgtaaattaattaaactgaaatatatttgcataag
>TU249355
CAATTGCGCGTGCGTCAAGTTGCTAGTTGTTCTTCTTGACACGCAAAATTCACCCCGCTTTGGTTTGCTTTAGCGAATCTATTTTTTTTTCAGAATGCAGCAAGGCTACAATCCAAGGCCATTTTATGGCGCCCCACCACAGAAGCGGTTCAGGAACGCTAATGGAGGGGCTAACAACAGGAGAAAGCAGCCTAACTTCTCTGCTGACATAGTGTTTACCACCAAGGCGGGAAATGTACAGACCATCCCCTCCTTGACCAAACAGTTGAAGGCCATCACTGGTGAGACTGTCATTGgtcttcagtatgtgtggGAGTACCGGAGCCCTAGTAAGTCAGTCCCACCCCATTACCAGTGTAAACTCTGCAAGAAGGTAAGCCGTCTGCAGACTGACATGCTGGCTCACATCAAGGGCTGGAAGCACTCCTTCAGATACAtgAAGCAAAATCATTCTGCCAAGATGCCCTTTAAGGAAGATGCTGCCACAAAGGACCATGAAGTGAGGAAGAAGGTGAAAGAAGCAGCAGCAGAGCTGGAGAAGGCAGAGGGCAGGGGACAGCTAAAGGTGATTCTGAAGGAGCCCAGTGAGGTCCAAGCATTTGCAGGACTACGTTCAGCAATCCCCAACATGGGGCCACCAGGAGGGATGGGAGGGCCAGGAGGAATGGGAGCTAGAGGACCAAAAccagGTGGCAGGTTTGCAGAGCCTCTGTTCCCAGGGGAGTTCCCTCTCCAAGGCGGCAGCCTCAACTACCCCATGGGTGATATGGGGGGCTACTCTGACCCCCTGCCTCGCTCCACGGCTTTCCAGAAAAGGGACATGAGCTTCCGAGGCTACCCTGAC
>TU249356
CAATTGCGCGTGCGTCAAGTTGCTAGTTGTTCTTCTTGACACGCAAAATTCACCCCGCTTTGGTTTGCTTTAGCGAATCTATTTTTTTTTTCAGAATGCAGCAAGGCTACAATCCAAGGCCATTTTATGGCGCCCCACCACAGAAGCGGTTCAGGAACGCTAATGGAGGGGCTAACAACAGGAGAAAGCAGCCTAACTTCTCTGCTGACATAGTGTTTACCACCAAGGCGGGAAATGTACAGACCATCCCCTCCTTGACCAAACAGTTGAAGGCCATCACTGGTGAGACTGTCATTGgtcttcagtatgtgtggGAGTACCGGAGCCCTAGTAAGTCAGTCCCACCCCATTACCAGTGTAAACTCTGCAAGAAGGTAAGCCGTCTGCAGACTGACATGCTGGCTCACATCAAGGGCTGGAAGCACTCCTTCAGATACAtgAAGCAAAATCATTCTGCCAAGATGCCCTTTAAGGAAGATGCTGCCACAAAGGACCATGAAGTGAGGAAGAAGGTGAAAGAAGCAGCAGCAGAGCTGGAGAAGGCAGAGGGCAGGGGACAGCTAAAGGTGATTCTGAAGGAGCCCAGTGAGGTCCAAGCATTTGCAGGACTACGTTCAGCAATCCCCAACATGGGGCCACCAGGAGGGATGGGAGGGCCAGGAGGAATGGGAGCTAGAGGACCAAAAccagGTGGCAGGTTTGCAGAGCCTCTGTTCCCAGGGGAGTTCCCTCTCCAAGGCGGCAGCCTCAACTACCCCATGGGTGATATGGGGGGCTACTCTGACCCCCTGCCTCGCTCCACGGCTTTCCAGAAAAGGGACATGAGCTTCCGAGGCTACCCTGAC
>TU249357
TGTCTGTTCTGTGGTCGACCTGAAGCGTTTGCTTAAACCAAACCAATGTTTCTATCCAGAACCCATTCTTAAGCTGCAACCCCTGTGGGGGGATTGCAGGGACTCCTGACCCACTGTTTGGGGAACAGTGCAGTGGGGTTTGCCCCTGTGCTGCCGCCTCCAGTCTCACtaatgcctgtctgtctctctttccttcggCCTGGTTATCCCAACTGACAGAGAAAGCAGCCTAACTTCTCTGCTGACATAGTGTTTACCACCAAGGCGGGAAATGTACAGACCATCCCCTCCTTGACCAAACAGTTGAAGGCCATCACTGGTGAGACTGTCATTGgtcttcagtatgtgtggGAGTACCGGAGCCCTAGTAAGTCAGTCCCACCCCATTACCAGTGTAAACTCTGCAAGAAGGTAAGCCGTCTGCAGACTGACATGCTGGCTCACATCAAGGGCTGGAAGCACTCCTTCAGATACAtgAAGCAAAATCATTCTGCCAAGATGCCCTTTAAGGAAGATGCTGCCACAAAGGACCATGAAGTGAGGAAGAAGGTGAAAGAAGCAGCAGCAGAGCTGGAGAAGGCAGAGGGCAGGGGACAGCTAAAGGTGATTCTGAAGGAGCCCAGTGAGGTCCAAGCATTTGCAGGACTACGTTCAGCAATCCCCAACATGGGGCCACCAGGAGGGATGGGAGGGCCAGGAGGAATGGGAGCTAGAGGACCAAAAccagGTGGCAGGTTTGCAGAGCCTCTGTTCCCAGGGGAGTTCCCTCTCCAAGGCGGCAGCCTCAACTACCCCATGGGTGATATGGGGGGCTACTCTGACCCCCTGCCTCGCTCCACGGCTTTCCAGAAAAGGGACATGAGCTTCCGAGGCTACCCTGAC
>TU249358
TCTCACCTGTCCGTGGGTAGGATGGCGATCTCATTATGCAGTCTCTGCCATGTTTGTGCTATGTTGACTTCTGTGCGTTTCCCAGTGTTTACCACCAAGGCGGGAAATGTACAGACCATCCCCTCCTTGACCAAACAGTTGAAGGCCATCACTGGTGAGACTGTCATTGgtcttcagtatgtgtggGAGTACCGGAGCCCTAGTAAGTCAGTCCCACCCCATTACCAGTGTAAACTCTGCAAGAAGGTAAGCCGTCTGCAGACTGACATGCTGGCTCACATCAAGGGCTGGAAGCACTCCTTCAGATACAtgAAGCAAAATCATTCTGCCAAGATGCCCTTTAAGGAAGATGCTGCCACAAAGGACCATGAAGTGAGGAAGAAGGTGAAAGAAGCAGCAGCAGAGCTGGAGAAGGCAGAGGGCAGGGGACAGCTAAAGGTGATTCTGAAGGAGCCCAGTGAGGTCCAAGCATTTGCAGGACTACGTTCAGCAATCCCCAACATGGGGCCACCAGGAGGGATGGGAGGGCCAGGAGGAATGGGAGCTAGAGGACCAAAAccagGTGGCAGGTTTGCAGAGCCTCTGTTCCCAGGGGAGTTCCCTCTCCAAGGCGGCAGCCTCAACTACCCCATGGGTGATATGGGGGGCTACTCTGACCCCCTGCCTCGCTCCACGGCTTTCCAGAAAAGGGACATGAGCTTCCGAGGCTACCCTGAC
>TU249353
GCCAGGAGGGGTTGTTGGGGGAGAGTCCGGGAAGCCGCTACCCTGATGAGTTCAGAGGGGGACAGATGGGAAGTGGATCCGGCCAAGGGTTGATGGGAGCTGTACCTGAAACCAGCAGCCTTCCGACCACGCTACTCAAATACCTGgACAATTTCCAGATCGAGAACGAGGGTGATGCTCAGATCGTGCTGAAGGTGACACAGAAGCTGACAGATGTCCTAATGGACTACAGACTTAGGAGTGTTTCCTCGGGTCCTAGTATGAAGAGCGGTTTGTCGCTGGGCTCCATGAGCTACTCCGACTCTCCCAGAATGTCTAGCGGTAGTGACCGCTTCTCAGGTGGCTTCTCTGGGAACCTCTCTGGCCCTTCCAGATACTGATGGTCTATCCAGGTACTACAACTAACTGATCCATCCCCACTTGACACATCCACCTTCCTGGGGTAACCCATCCTCCGCCTCACCCCCAAGATATACCCTGAGTCCATGGGGTC
>TU249354
GCCAGGAGGGGTTGTTGGGGGAGAGTCCGGGAAGCCGCTACCCTGATGAGTTCAGAGGGGGACAGATGGGAAGTGGATCCGGCCAAGGGTTGATGGGAGCTGTACCTGAAACCAGCAGCCTTCCGACCACGCTACTCAAATACCTGgACAATTTCCAGATCGAGAACGAGGGTGATGCTCAGATCGTGCTGAAGGTGACACAGAAGCTGACAGATGTCCTAATGGACTACAGACTTAGGAGTGTTTCCTCGCAGGGTCCTAGTATGAAGAGCGGTTTGTCGCTGGGCTCCATGAGCTACTCCGACTCTCCCAGAATGTCTAGCGGTAGTGACCGCTTCTCAGGTGGCTTCTCTGGGAACCTCTCTGGCCCTTCCAGATACTGATGGTCTATCCAGGTACTACAACTAACTGATCCATCCCCACTTGACACATCCACCTTCCTGGGGTAACCCATCCTCCGCCTCACCCCCAAGATATACCCTGAGTCCATGGGGTC

Function

NR:

description
uncharacterized protein LOC110535707 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966978.1 False 1992 mRNA 0.49 12 6248269 6254241
TU249355 False 844 TUCP 0.45 9 6248078 6252483
TU249356 False 845 TUCP 0.53 9 6248078 6252483
TU249357 False 882 TUCP 0.54 7 6249374 6252483
TU249358 False 717 TUCP 0.54 6 6250996 6252483
TU249353 False 493 TUCP 0.55 4 6252557 6253591
TU249354 True 496 TUCP 0.39 4 6252557 6253591

Neighbor

gene id symbol gene type direction distance location
LOC110534148 invs coding upstream 19349 6174662 ~ 6228920 (+)
LOC110535756 stx17 coding upstream 90329 6129251 ~ 6157940 (+)
LOC110534158 nr4a3 coding upstream 123870 6088505 ~ 6124399 (+)
LOC110508220 sc61b coding upstream 284289 5957257 ~ 5963980 (+)
LOC110508149 LOC106593364 coding upstream 352736 5822391 ~ 5898142 (+)
LOC110534143 tmem67 coding downstream 5663 6259904 ~ 6277154 (+)
LOC110535685 LOC106606054 coding downstream 23233 6277474 ~ 6290170 (+)
LOC110489435 LOC106570746 coding downstream 123047 6377288 ~ 6399616 (+)
LOC110508031 esrp1 coding downstream 171893 6426134 ~ 6448961 (+)
LOC110508070 NA coding downstream 237973 6492214 ~ 6496204 (+)
G218780 NA non-coding upstream 9644 6237569 ~ 6238625 (+)
G218769 NA non-coding upstream 46871 6200927 ~ 6201398 (+)
G218766 NA non-coding upstream 53659 6193739 ~ 6194610 (+)
G218763 NA non-coding upstream 59942 6186304 ~ 6188327 (+)
G218759 NA non-coding upstream 67058 6180989 ~ 6181211 (+)
G218783 NA non-coding downstream 10807 6265048 ~ 6265311 (+)
G218784 NA non-coding downstream 12016 6266257 ~ 6266504 (+)
G218791 LOC106605873 non-coding downstream 49025 6303266 ~ 6305269 (+)
G218793 NA non-coding downstream 51526 6305767 ~ 6307238 (+)
G218794 NA non-coding downstream 53581 6307822 ~ 6318435 (+)
G218558 NA other upstream 499527 5748225 ~ 5748742 (+)
G218842 LOC106605951 other downstream 196097 6450338 ~ 6455202 (+)
LOC110520771 fam171a1 other downstream 351081 6560989 ~ 6607009 (+)
LOC110507851 acbd7 other downstream 370343 6624575 ~ 6631601 (+)
G218971 NA other downstream 463387 6717628 ~ 6719163 (+)

Expression


Co-expression Network