LOC110535663 (cdh17)


Basic Information

Item Value
gene id LOC110535663
gene name cdh17
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6299997 ~ 6325652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966990.1
GTGATCACACTACAGTCGAAGGAGTGAAACGGGAACTCTTAACTCATCATGGCACATCCCACAATGCACCTGCTGCTGCTCAGCCTCCTCATCGCCACCGCTGCTGGGAAAGGCCTGGAGAAGGGACCACTGGAGAACAAGGTTCTAGACATACCAGAGGGGACACCTGTACCCTACGCCCtctaccagTTCCAATCGTCCCACCTCGAGGTTGATGGGTTCAGATTGACAGGAGAGACTGAAGGAAAGATCAGCATCTCAGAGGACGGCTGGCTCTACCTGGAACAGACCCTGGACTGggcccacacacagacacatactctggagctgGAGGCCTTAGTGGGTTCAGAACCAGTAGAAGGTCCagtcatcatcaccatcaacgTGTTGGATGTCAACAACCACGCCCCGTCCTTCAACCAGACTGACTACATCGGCATCGTCAGGGAACGTACCCCCGcaggtgtTCCATTTGCGCGTGTGTTTGCTACTGACCTGGACGACCCAGAGTCTCCCAACGCCCATCTGAGTTACACCCTGGTCTCCCAGATCCCCAACAGAGACAACACCTTGTTCTTCGAGATCAACAGCAACACAGGAGAGATTTCTACTACTGCCgaggGAGAGCGTCTGCTGAAGGCCAGAGAAAGTGTTATTCATTCCAGAGGAGGGGACTTCAGTGATTCTCTGAAGAAGAGGTTTGATGACTACTGCACCCCCACAGGGGACATCCCTTATGAACTCAACCCCTTCTACAGCTGTGTGCAGAGAGCAGAGTCTCGGAGGCTGAACCCTCTGGAAGACCCAGACTTCACGCTGATTGTTCGTGTGGAGGACATGGGCGGGGAGTCGGTGAACGCTCTCAACGGTAACACGAGGGTTAAAATTGTCGTGCAGGAGAACCTGTGGGTCAATCCTGGACCGATCAACCTCAGAGAACAGTTGAAAGGGATATACCCCATGCCCATCGGCAAGGTCCAGTCTAATGATCCCAGTGCCTTCTACAGGCTGGTACAGAAAGAACGGGAGCTGACGTTCCCCTTCAATGTCACGGAGGAAGGAGACATTCTGCTGACTGAGGAGCTGGACAGAGAGGACAAGGCCATGtacatCCTGGTGGTGTTTGCTGAGGATAGCTATGGTAACCAGGTAGACCCTCCCCTGGAAGTGCAGGTGGTGGTGGACGATGTGAATGATAACGCTCCAATCTGTGAGGAGGAACTCAGTGTGTTTGAAGTGCAGGAGAACGAACCCACAGGCAGCCCAGTCGGACATCTGATGGTGCATGATGCTGATGATGACAACACACCCAACGCACTGCTCTCCTATTCATTGGTGACCCAAACCCCTTCCTCCGTCTTTACCATCGATGGCATCAGCGGCCGCATCCAGACCAAGCAGATGCTCCAACGCAGAGATGCAACAGAGTACCACCTCACTGTCAGAGTAAACGACCcagGTTTCAGCACAGAATGTAAGGTCCTCATCAAGGTTATCGACATCAACAATGAGCTGCCCATCTTCGAGATGAATGACtatgGTAGTCACAACCTGTCTGAAGACACAGCTCTAGGCCACACCCTCCTGACAGTGAAAGCCACAGACGCTGACGACCCTGGAACAGGAAGCTCCCGCATCGAGTTCCACATAACCGCTGGCAACGAAGATGGAGTTTTCGCCATGGAGACAGACGACAATGGGGAGGGCAGGCTTGTTGTTGCTAAGCCTCTGAACTATGAGACTGCTTCCTCCTATAAGCTACAGATTGATGCTCGTAACCCAGAGCCGCTGGTGAGCGGTCTCGAGTACGGCGCTGAGTCGTCCGCCGTGGTCTTGGTGGCGATCAGTGACGTTGATGAGGCTCCAGTGTTTGACATGGACATTCTGGATGTCACGGTGCCAGAGGACACCAAGGAGGGAGCTACGCTGCTCAAAATAGACGCCAAGGACCCAGAGGGAAAAGAGATACTgtTCAAGATGGAGGGAGACACTAAGGGTTGGTTGGAGATTGATCCTGCTACTGGAGAGATAAAGATAAAGAATAAAGCTgtgctggacagagagatggtggaggCCTTCCAATTTACTGTTGTCGCCTTCGAGAAAGCCAATCCAGAGCTGTCCTCAGAGCGCGAGGTGTCTGTGAGGCTGCTGGATGTGAATGACAATGTCCCCAAGCTGACAGAGAACCAGGCCTTCATCTGTGTGAAGAAGCCCCAGCCTATAGTCCTGACGGCCCTGGACGCGGACGCAGACCCCTTCGGAGCACCTTTCACATTCAGCCTGGCCCAGGGCAAGAAGTCGCCCAACTGGGACCTAAGCGCTGTGGACGGTACGTCTGCTAAACTGACCCTGAAGAAATCTCCCAGCGAGGACAAAACCTTCCTAATCCCCATCAACATCAAAGACAACGCTGGCATGGGCATCACACAGAAGTTTGAGGTGCGAGTGTGTAACTGCACAGAGCTGGGATACTGTTTCACCGAGCCGGGCGTTCATGCAGGGGTGTTAGGAATGCCCACCACCATCGGAATCCTGGCTGGAACTGTCGGATTCATCGCCCTGGTCCTGATCATCGCTTTCCATCGTATAAAGAAGGACAACCAGAAGAAAGCCTTGCTGGGAGAAACGGACGCCATTCTCTAGAAACATATGAGATAGCATGTGTTTGTTTAATTGTTATATTTCTGAAGAACAGATCTACTTTGATTGGTTGTATGCACGTTATAAATACTACCTGGTTTCGTCATAATCATGCGCTCATGCAGCTCAATAACTTATTTCCCTTGTCAGTGAATTTTGTCTGTATTTAGAATTTAGACTGTCCATTCTCAGCTAGTGTGTCTTGACTGGCTGTGCACTGTGTGTGACGGTTCAAACACTCCATTTCAAGCTGCTTGCTGTAATTGTGTAGTCTGTTGCTCAGAGACTTTAGTTCACTGTTTGCCCCTGACTGTTGTTTGTGGTTGATACTGTCTTTATACTGATACTCCATGATGTTTTTTTGATGAGGCCTGATATTAGTGAAGATGCTAGCTAGCCGAGGGTTAAATTAGGACGGTTCCACCACTTTAGAATGGGAGAAAGACTGCCTACAGTAAAGAGTAGAAATGACCATGGAAAAACAACCGATGTTGGAGACAGTTCCAACACCTGGTTTTAATTATATTTTAGTTTGTTTTGCAGTCAAAGATAATAGTTCCAGTATAGTTTTCGTTTTTCAGTTCACTCAATTGTTTTTccaatgtttgtttttatttaattttcatTTCAGTTTTCATTTACTATTATAACCTTGGTGTGTGCAACACAGtaatggagagaggagtggggaaaATGTCTGTCTGAATAAAGGCTATCTGGACCTACTG
>XM_036966983.1
CGGGGAGATTAGACAATGATTAGGTTCAATAAAGTATTGCATGTTAATGTTGAGTTAACGTTTGACCAGGCTGGATGGGGCAGTAGTGATCACACTACAGTCGAAGGAGTGAAACGGGAACTCTTAAGTAAGCTCATCATGGCACATCCCACAATGCACCTGCTGCTGCTCAGCCTCCTCATCGCCACCGCTGCTGGGAAAGGCCTGGAGAAGGGACCACTGGAGAACAAGGTTCTAGACATACCAGAGGGGACACCTGTACCCTACGCCCtctaccagTTCCAATCGTCCCACCTCGAGGTTGATGGGTTCAGATTGACAGGAGAGACTGAAGGAAAGATCAGCATCTCAGAGGACGGCTGGCTCTACCTGGAACAGACCCTGGACTGggcccacacacagacacatactctggagctgGAGGCCTTAGTGGGTTCAGAACCAGTAGAAGGTCCagtcatcatcaccatcaacgTGTTGGATGTCAACAACCACGCCCCGTCCTTCAACCAGACTGACTACATCGGCATCGTCAGGGAACGTACCCCCGcaggtgtTCCATTTGCGCGTGTGTTTGCTACTGACCTGGACGACCCAGAGTCTCCCAACGCCCATCTGAGTTACACCCTGGTCTCCCAGATCCCCAACAGAGACAACACCTTGTTCTTCGAGATCAACAGCAACACAGGAGAGATTTCTACTACTGCCgaggGAGAGCGTCTGCTGAAGGCCAGAGAAAGTGTTATTCATTCCAGAGGAGGGGACTTCAGTGATTCTCTGAAGAAGAGGTTTGATGACTACTGCACCCCCACAGGGGACATCCCTTATGAACTCAACCCCTTCTACAGCTGTGTGCAGAGAGCAGAGTCTCGGAGGCTGAACCCTCTGGAAGACCCAGACTTCACGCTGATTGTTCGTGTGGAGGACATGGGCGGGGAGTCGGTGAACGCTCTCAACGGTAACACGAGGGTTAAAATTGTCGTGCAGGAGAACCTGTGGGTCAATCCTGGACCGATCAACCTCAGAGAACAGTTGAAAGGGATATACCCCATGCCCATCGGCAAGGTCCAGTCTAATGATCCCAGTGCCTTCTACAGGCTGGTACAGAAAGAACGGGAGCTGACGTTCCCCTTCAATGTCACGGAGGAAGGAGACATTCTGCTGACTGAGGAGCTGGACAGAGAGGACAAGGCCATGtacatCCTGGTGGTGTTTGCTGAGGATAGCTATGGTAACCAGGTAGACCCTCCCCTGGAAGTGCAGGTGGTGGTGGACGATGTGAATGATAACGCTCCAATCTGTGAGGAGGAACTCAGTGTGTTTGAAGTGCAGGAGAACGAACCCACAGGCAGCCCAGTCGGACATCTGATGGTGCATGATGCTGATGATGACAACACACCCAACGCACTGCTCTCCTATTCATTGGTGACCCAAACCCCTTCCTCCGTCTTTACCATCGATGGCATCAGCGGCCGCATCCAGACCAAGCAGATGCTCCAACGCAGAGATGCAACAGAGTACCACCTCACTGTCAGAGTAAACGACCcagGTTTCAGCACAGAATGTAAGGTCCTCATCAAGGTTATCGACATCAACAATGAGCTGCCCATCTTCGAGATGAATGACtatgGTAGTCACAACCTGTCTGAAGACACAGCTCTAGGCCACACCCTCCTGACAGTGAAAGCCACAGACGCTGACGACCCTGGAACAGGAAGCTCCCGCATCGAGTTCCACATAACCGCTGGCAACGAAGATGGAGTTTTCGCCATGGAGACAGACGACAATGGGGAGGGCAGGCTTGTTGTTGCTAAGCCTCTGAACTATGAGACTGCTTCCTCCTATAAGCTACAGATTGATGCTCGTAACCCAGAGCCGCTGGTGAGCGGTCTCGAGTACGGCGCTGAGTCGTCCGCCGTGGTCTTGGTGGCGATCAGTGACGTTGATGAGGCTCCAGTGTTTGACATGGACATTCTGGATGTCACGGTGCCAGAGGACACCAAGGAGGGAGCTACGCTGCTCAAAATAGACGCCAAGGACCCAGAGGGAAAAGAGATACTgtTCAAGATGGAGGGAGACACTAAGGGTTGGTTGGAGATTGATCCTGCTACTGGAGAGATAAAGATAAAGAATAAAGCTgtgctggacagagagatggtggaggCCTTCCAATTTACTGTTGTCGCCTTCGAGAAAGCCAATCCAGAGCTGTCCTCAGAGCGCGAGGTGTCTGTGAGGCTGCTGGATGTGAATGACAATGTCCCCAAGCTGACAGAGAACCAGGCCTTCATCTGTGTGAAGAAGCCCCAGCCTATAGTCCTGACGGCCCTGGACGCGGACGCAGACCCCTTCGGAGCACCTTTCACATTCAGCCTGGCCCAGGGCAAGAAGTCGCCCAACTGGGACCTAAGCGCTGTGGACGGTACGTCTGCTAAACTGACCCTGAAGAAATCTCCCAGCGAGGACAAAACCTTCCTAATCCCCATCAACATCAAAGACAACGCTGGCATGGGCATCACACAGAAGTTTGAGGTGCGAGTGTGTAACTGCACAGAGCTGGGATACTGTTTCACCGAGCCGGGCGTTCATGCAGGGGTGTTAGGAATGCCCACCACCATCGGAATCCTGGCTGGAACTGTCGGATTCATCGCCCTGGTCCTGATCATCGCTTTCCATCGTATAAAGAAGGACAACCAGAAGAAAGCCTTGCTGGGAGAAACGGACGCCATTCTCTAGAAACATATGAGATAGCATGTGTTTGTTTAATTGTTATATTTCTGAAGAACAGATCTACTTTGATTGGTTGTATGCACGTTATAAATACTACCTGGTTTCGTCATAATCATGCGCTCATGCAGCTCAATAACTTATTTCCCTTGTCAGTGAATTTTGTCTGTATTTAGAATTTAGACTGTCCATTCTCAGCTAGTGTGTCTTGACTGGCTGTGCACTGTGTGTGACGGTTCAAACACTCCATTTCAAGCTGCTTGCTGTAATTGTGTAGTCTGTTGCTCAGAGACTTTAGTTCACTGTTTGCCCCTGACTGTTGTTTGTGGTTGATACTGTCTTTATACTGATACTCCATGATGTTTTTTTGATGAGGCCTGATATTAGTGAAGATGCTAGCTAGCCGAGGGTTAAATTAGGACGGTTCCACCACTTTAGAATGGGAGAAAGACTGCCTACAGTAAAGAGTAGAAATGACCATGGAAAAACAACCGATGTTGGAGACAGTTCCAACACCTGGTTTTAATTATATTTTAGTTTGTTTTGCAGTCAAAGATAATAGTTCCAGTATAGTTTTCGTTTTTCAGTTCACTCAATTGTTTTTccaatgtttgtttttatttaattttcatTTCAGTTTTCATTTACTATTATAACCTTGGTGTGTGCAACACAGtaatggagagaggagtggggaaaATGTCTGTCTGAATAAAGGCTATCTGGACCTACTG

Function

symbol description
cdh17 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within pronephros development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Is expressed in digestive system; intermediate cell mass of mesoderm; mesoderm; and renal system. Orthologous to human CDH17 (cadherin 17).

NR:

description
cadherin-17-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06811 CDH17; cadherin 17, LI cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966990.1 False 3371 mRNA 0.50 19 6299997 6325567
XM_036966983.1 True 3461 mRNA 0.50 19 6299997 6325652

Neighbor

gene id symbol gene type direction distance location
LOC110535643 tex10 coding downstream 40181 6228912 ~ 6259816 (-)
trnat-cgu-2 NA coding downstream 76128 6223797 ~ 6223869 (-)
LOC110535692 LOC106593159 coding downstream 126601 6158030 ~ 6173396 (-)
LOC110520778 LOC106606060 coding downstream 342965 5951557 ~ 5957032 (-)
LOC110508167 LOC106606061 coding downstream 367040 5927299 ~ 5932957 (-)
LOC118936454 LOC106605946 coding upstream 2442 6328094 ~ 6332714 (-)
LOC118944879 LOC106605946 coding upstream 7323 6332975 ~ 6333735 (-)
LOC110534138 LOC106605946 coding upstream 12240 6329602 ~ 6349701 (-)
LOC118944880 rad54b coding upstream 28443 6354095 ~ 6377182 (-)
LOC110487828 LOC106570748 coding upstream 41669 6367321 ~ 6372061 (-)
G219811 NA non-coding downstream 171 6299330 ~ 6299826 (-)
G219810 NA non-coding downstream 6107 6290618 ~ 6293890 (-)
G219808 LOC106606054 non-coding downstream 9836 6288099 ~ 6290161 (-)
G219807 NA non-coding downstream 26773 6272494 ~ 6273224 (-)
G219804 NA non-coding downstream 28100 6270954 ~ 6271897 (-)
G219819 NA non-coding upstream 1525 6327177 ~ 6331994 (-)
G219822 NA non-coding upstream 19005 6344657 ~ 6407068 (-)
G219847 NA non-coding upstream 60337 6385989 ~ 6386209 (-)
cf191 cf191 non-coding upstream 171043 6496695 ~ 6499580 (-)
G219970 fam171a1 non-coding upstream 277530 6603182 ~ 6607008 (-)
G219592 NA other downstream 547903 5751724 ~ 5752094 (-)
G219591 NA other downstream 551283 5748158 ~ 5748714 (-)
G219500 NA other downstream 611706 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1290591 5008084 ~ 5009406 (-)
G219200 NA other downstream 1527946 4770350 ~ 4772051 (-)
G219820 LOC106605946 other upstream 7316 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 160848 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 604339 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 623146 6948445 ~ 6952369 (-)

Expression


Co-expression Network