LOC118944879 (LOC106605946)


Basic Information

Item Value
gene id LOC118944879
gene name LOC106605946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6332975 ~ 6333735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966998.1
ttatgtggacatattgaagcaacaattccagacatcagttaaagttaaagtttggtcgcaaatgggtcttccaaatttcTCACCAGAGGGCCGTGTGTGTGCTGCAGTGTTTGACTGTAAGTTCATCGAGACGTCAGCAGCAATGCAACACAACGTCTGGCCAACCTTCCATGGCATTGTACAGCAGCTACGACTACGCAGAGACACCAAGGAGAACAACAACcgccgcagacacacacactcacacacacgccgCGACAGCATACCCAAGAAGGCCAAACGCTTCCTGGACAAGATGGGGGCCAAGAACAATGCCAACGTCGCATTCCGTCTGAAGTCCAAATCCTGCCATGATCTTTCAGTGCTCTAAGatccaggacacacacacaaccccaccccTACTGCAGTCTACATTAGACTGACCCCTCAAAACTGTCGCCCCATTCGCCAGCCTCTGTGACGGTCTGGAGAATCAACCAATGGACATGCAGTGTTCTGACAATCTCAGccgacagagagattgaaaaaggaaaagagagaggtgcTAGATAATTAGTGATCTCTAATCCTTTTAGGGTCATGAGAGAGATGTTAATTCCTGTCCTTTTTTAATCCCTCactgagactctctcctctctctctatcatccctcgttctctctcccaaAATGCTTGACCAGGGTTACCCAGACAATTTGAAGCCTGATAACAAGGTGCTTAAATGTTCGTGGTTTTGTACATAGTCCTATCTGTCCGATTGAG

Function

NR:

description
GTP-binding protein GEM-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966998.1 True 761 mRNA 0.48 1 6332975 6333735

Neighbor

gene id symbol gene type direction distance location
LOC118936454 LOC106605946 coding downstream 261 6328094 ~ 6332714 (-)
LOC110535663 cdh17 coding downstream 7323 6299997 ~ 6325652 (-)
LOC110535643 tex10 coding downstream 73159 6228912 ~ 6259816 (-)
trnat-cgu-2 NA coding downstream 109106 6223797 ~ 6223869 (-)
LOC110535692 LOC106593159 coding downstream 159579 6158030 ~ 6173396 (-)
LOC110534138 LOC106605946 coding upstream 4157 6329602 ~ 6349701 (-)
LOC118944880 rad54b coding upstream 20360 6354095 ~ 6377182 (-)
LOC110487828 LOC106570748 coding upstream 33586 6367321 ~ 6372061 (-)
LOC110507893 LOC100380651 coding upstream 64439 6398174 ~ 6425294 (-)
epb41l4b LOC106605949 coding upstream 121098 6454833 ~ 6479408 (-)
G219819 NA non-coding downstream 981 6327177 ~ 6331994 (-)
G219811 NA non-coding downstream 33149 6299330 ~ 6299826 (-)
G219810 NA non-coding downstream 39085 6290618 ~ 6293890 (-)
G219808 LOC106606054 non-coding downstream 42814 6288099 ~ 6290161 (-)
G219807 NA non-coding downstream 59751 6272494 ~ 6273224 (-)
G219822 NA non-coding upstream 10922 6344657 ~ 6407068 (-)
G219847 NA non-coding upstream 52254 6385989 ~ 6386209 (-)
cf191 cf191 non-coding upstream 162960 6496695 ~ 6499580 (-)
G219970 fam171a1 non-coding upstream 269447 6603182 ~ 6607008 (-)
G219988 LOC100136012 non-coding upstream 305205 6638940 ~ 6642155 (-)
G219592 NA other downstream 580881 5751724 ~ 5752094 (-)
G219591 NA other downstream 584261 5748158 ~ 5748714 (-)
G219500 NA other downstream 644684 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1323569 5008084 ~ 5009406 (-)
G219200 NA other downstream 1560924 4770350 ~ 4772051 (-)
LOC110507902 LOC106593870 other upstream 152765 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 596256 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 615063 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 618824 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 633346 6967081 ~ 6970500 (-)

Expression


Co-expression Network