LOC110534138 (LOC106605946)


Basic Information

Item Value
gene id LOC110534138
gene name LOC106605946
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6329602 ~ 6349701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110534138
ATGCATGAGATTCGAGTCTTCATGGCACAGTTTGATTTCTTTTCTTTTCTTATCATCATGCTGTTGAGTATGCGACGACACAGTCTGCGGCTGCAGCACCAACTCCACCGGTGGAGCGTCAGTGATACCGGGAGCCACCTATCAGACAGCCTCGCGTCTCCAGCGTGCATGTCCCGCTCCAAATCCTGTACGAACTCCACCGGGGAATCGGATGGGAGCCGCGACAGCTGGGCCTCTTTAGACTCCACAGACTCCGTCATCTCCACTGGGTCTACCGGGAATACCGGCGGCAGCTCGAGACCGTTTCGCGTGGTGCTGCTGGGCGCCAGGGTGTCGGTAAATCCGCGGTTGCCAGCATCTTCGCTGGAACGGCGGACAGCATGGACTGTGACGAGTGCGAGCTCTATGGAGATGAGGTGTGTGAGCAGACCGTCACAGTGGATGGAGAGAAAGCCACAGTCACTCTAGTGGACAACTGGGACTCAGAGGATGAGGGAGGGTCGTCTCAGGACCAGTGTATATAGACAGGCGACGGTCCTCCTTCCTGAAAGCCTCAGAGCTACGTATATCCCTCCGCCAACACCGCCCTGCCCACCACACACCAATCATCCTGGTGGGAAACAAGTGTGACTTGGTCCGACGCAGAGAGGTGTCAGTTACCGAGGGCCGTGTGTGTGCTGCAGTGTTTGACTGTAAGTTCATCGAGACGTCAGCAGCAATGCAACACAACGTCTGGCCAACCTTCCATGGCATTGTACAGCAGCTACGACTACGCAGAGACACCAAGGAGAACAACAACcgccgcagacacacacactcacacacacgccgCGACAGCATACCCAAGAAGGCCAAACGCTTCCTGGACAAGATGGGGGCCAAGAACAATGCCAACGTCGCATTCCGTCTGAAGTCCAAATCCTGCCATGATCTTTCAGTGCTCTAA
>TU250699
GCGCTCACAGTGTTCAGAGACCTCAACAATCAAACAGCCTCTTTCTTTCCCATCTCGAGGATTTAACTGTCTACCTGCACTAATGCTTGACAACATCTGACATTTGCTCGTAGCTCTTGATGAACTCTTATTCCTGAGTTTGGACATTCGGTCGTATCCAGTCTCAATCAATTTCACTAAATAATGGATTTGTAGGATTTATTTTACTTTCTGAGAATACTTTGGAGATTCCCATCTGTTCCATTACTTGTTTTATAGCCCAGTCCAGGGGTGTTTCTTCAGCGCACCTTCATTTTTAAAGGGCGAGTTTTATTAGTTTGATTTCTTTTCTTTTCTTATCATCATGCTGTTGAGTATGCGACGACACAGTCTGCGGCTGCAGCACCAACTCCACCGGTGGAGCGTCAGTGATACCGGGAGCCACCTATCAGACAGCCTCGCGTCTCCAGCGTGCATGTCCCGCTCCAAATCCTGTACGAACTCCACCGGGGAATCGGATGGGAGCCGCGACAGCTGGGCCTCTTTAGACTCCACAGACTCCGTCATCTCCACTGGGTCTACCGGGAATACCGGCGGCAGCTCGAGACCGTTTCGCGTGGTGCTGCTGGGCGCCAGGGTGTCGGTAAATCCGCGGTTGCCAGCATCTTCGCTGGAACGGCGGACAGCATGGACTGTGACGAGTGCGAGCTCTATGGAGATGAGGTGTGTGAGCAGACCGTCACAGTGGATGGAGAGAAAGCCACAGTCACTCTAGTGGACAACTGGGACTCAGAGGATGAGGGAGGGTCGTCTCAGGACCAGTGTATATAGACAGGCGACGGTCCTCCTTCCTGAAAGCCTCAGAGCTACGTATATCCCTCCGCCAACACCGCCCTGCCCACCACACACCAATCATCCTGGTGGGAAACAAGTGTGACTTGGTCCGACGCAGAGAGGTGTCAGTTACCGGTGAGATTAGAGGCAcaggtttggtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcatatgtgtaaacagttgaagtcgaaagtttacatacacttaggttggagtcattaacctctctagggtagggggcagcattcggaattttggatgaaaagcatgcccaaattaaacggcctgctactcgggctcagaagataagatatgcatataactggtagatttggatagaaaacactctaaagtttccaaaactgttaaaatagtgtctgtgagtataacagaactgatttgtcAGGCGGAAACcagtagttttctattcaatgccattacagtatccattgacttaggactcaatttgcagttcctatgccttcaacagtctttagaaattgtttcaggcttgtattcttataaatgagagagtaagaccagtctgaatgagtggaccctaccgtgtcgcagagctttttcatgtgcaatcccgagagagtgcatttcttgtttaccttttatattgacaacgttattgtcagtttgaaatattatagatcatttaggctaaaaacaacctgagggttgaatagaaacattgtttgacatgtttctatgaactttacggatacaatttcgATTTTTCTGTCTGCCTGCTtggactgcgtttgagcctgtggattactgaagaaaacgtgcgaacaaaatggtttttggatataaagagactttattgaacaaaatgaacatttattgagtaaattaatgtcttctgagtgccaccatatgcagattatcaaaggtaagggattaatttgagttttgtaacgcttctgcttggctggttactgtttgtaataatttgtcaactgggctatgttctgggttaggtatgttctgggctaggtatgctttcactgaaaagcattttataaatctgacactgtggttggattaacaagaagttaatctttaaacctatgtaaaaatatgttttgttttcagaatttttataatgagcatttctgtatttgaatttggcgctctgcaatctcactggatgttggccagatgggacgctagcgtcccacataccctagagaggtttttaaaacttgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtaatttttccaacaattgtttacagacagattatttcacttataattcactgtatcacaatttcagtgggtcagaaggttacatacactaagttgactgtgcctttaaacagctaggaacattatgtcatggctttagacgggctaattgacatcatttgagtcaattggaggtgtacagtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctccacaagtctggttcatacttgggagcaatttccaaacgcctgaaggtaccactttcatctgtacaaacaatagtatgcaagtataaaccccatgggcCCACGCAGCCGGAATACCGCTCAGAAAGCAGACGC

Function

NR:

description
PREDICTED: GTP-binding protein GEM

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110534138 False 946 mRNA 0.56 5 6337892 6349701
TU250699 True 2557 TUCP 0.39 5 6329602 6341613

Neighbor

gene id symbol gene type direction distance location
LOC118944879 LOC106605946 coding downstream 4157 6332975 ~ 6333735 (-)
LOC118936454 LOC106605946 coding downstream 5178 6328094 ~ 6332714 (-)
LOC110535663 cdh17 coding downstream 12240 6299997 ~ 6325652 (-)
LOC110535643 tex10 coding downstream 78076 6228912 ~ 6259816 (-)
trnat-cgu-2 NA coding downstream 114023 6223797 ~ 6223869 (-)
LOC118944880 rad54b coding upstream 4394 6354095 ~ 6377182 (-)
LOC110487828 LOC106570748 coding upstream 17620 6367321 ~ 6372061 (-)
LOC110507893 LOC100380651 coding upstream 48473 6398174 ~ 6425294 (-)
epb41l4b LOC106605949 coding upstream 105132 6454833 ~ 6479408 (-)
LOC110508108 NA coding upstream 118650 6468351 ~ 6470134 (-)
G219819 NA non-coding downstream 5898 6327177 ~ 6331994 (-)
G219811 NA non-coding downstream 38066 6299330 ~ 6299826 (-)
G219810 NA non-coding downstream 44002 6290618 ~ 6293890 (-)
G219808 LOC106606054 non-coding downstream 47731 6288099 ~ 6290161 (-)
G219807 NA non-coding downstream 64668 6272494 ~ 6273224 (-)
G219847 NA non-coding upstream 36288 6385989 ~ 6386209 (-)
cf191 cf191 non-coding upstream 146994 6496695 ~ 6499580 (-)
G219970 fam171a1 non-coding upstream 253481 6603182 ~ 6607008 (-)
G219988 LOC100136012 non-coding upstream 289239 6638940 ~ 6642155 (-)
G219999 NA non-coding upstream 310044 6659745 ~ 6660111 (-)
G219592 NA other downstream 585798 5751724 ~ 5752094 (-)
G219591 NA other downstream 589178 5748158 ~ 5748714 (-)
G219500 NA other downstream 649601 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1328486 5008084 ~ 5009406 (-)
G219200 NA other downstream 1565841 4770350 ~ 4772051 (-)
LOC110507902 LOC106593870 other upstream 136799 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 580290 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 599097 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 602858 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 617380 6967081 ~ 6970500 (-)
LOC110535692 LOC106593159 coding downstream 156206 6158030 ~ 6173396 (-)
LOC110520778 LOC106606060 coding downstream 372570 5951557 ~ 5957032 (-)
G219804 NA non-coding downstream 57705 6270954 ~ 6271897 (-)
G219822 NA non-coding upstream 3044 6344657 ~ 6407068 (-)

Expression


Co-expression Network