LOC110487828 (LOC106570748)


Basic Information

Item Value
gene id LOC110487828
gene name LOC106570748
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6367321 ~ 6372061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967053.1
GCATTATGCAAATGAGCGTGGGTAGTGCATCGGCAGCGCGAGGCAGATTAGAGCTGTGCCTGGGATCAGTGAGCACACGcgctctgtccccctccctctcagagcaactagtgcctctgtctgtctctcctttctccgcttttcctctctctttagCGTTTCACTAGTTTTCCCTCATTTTGTTGTTCCCGTCGGCGGATGATTCGTGTGTTTCTCTTTGAGAAGCAGCTCTGATTTTcctttgtgtaaaaaaaaaatcgcGCATTTGCACGGACTCGCGCTGCGCGCACACCTCCCCGGTTAAACCAGCGCCGTTTCCTCTTTTCTAGTTAAACGGAAATAAGAATAAAGAAAATGCATCTTTACAATTTCATCGGCATTTCCCCATGTAAGCACACATATTCCCCCGTATGTTAGTGTTTGGTGTATAGCACTTAGAACGAGCGCTGGTTTGAGGTTTAGAGAGACCGGGCTGTAAGTAGGTCGGGCTGGGTTTAAGCGGCTTTAGCCTGCGTCAGCCTAAGCTGGGAGGAATTCACCCAAAGCCCTCCGCGGTAGGCGGGGGCCTAAACGAGGCTGGCCTAGTTAAGCCTGATTCTTATTGTTGCCCGTGTGGGTTGTGTAACACAGAGCAGAGAAGACCTCGGATGAGAGAGAGTACATGCAGTTAGACAGAGACTGTTTGATTGAGAATCCATGAAgggggagaaagaagagggacaaggaagagagtgagtgagagttaAACCAGTATTAGCCTGAGCCTCATCACAGAACAGAAAGAAAGGGGAGGTAGAGAACCAGACCAAATCTCAaaagaaggagaggaaaagaggcgAGATATTGTGTTGAGTTAGTGCTGGTGTCTAGGCCTGGCTCGGTCCAGTCTGGTTCCCTGGGCTATGTTCTAAGATGGCGTCTGGGTCCGTCTACATGTCGTCCAGTATGGTGGGTAAGGCTCGCTCCTCCAACTTCACCCTGTCTGAGAAACTGGACCTGCTGAAGCTGGTCCGCCCACACATTCTCATCCTGGAGGAGCACACCAACAAGCACGCTGTCATTGTGGACAAGAACAAGTGCTGGGACACAGTGTCTGATCAGTACAACGTCCTGGGGGGGGACAGGCCCCCCCGCACTGCCCAGGGCCTACGCACCCTCTACAAGAGGCTGAAGGAGTCGGCCAAACAGGAAGTAATGCAACGGAGACACGCCCAGCCAGAGTACAGAGGAAGTATATCTGAACCAaccaggagagtgatggagatgaTACCTCACCTTTTCCATCACGGAGCTATTCACCATGATAAAGACCCAGCGACGATgcacagGGTGATGTATAAGCATGACTCTCCCATGGAGCAACCTGGCAGCAGCTCCTCCCTCCCAGACTACCCATCAAACCCCGTCACCCACCACCTGGACCAGGATGTGGTCAGGCTGGACCAGGATGTGGTCAGGCTGGACCAGGACGTGGACGTGAAGCCTCCGCCAGACCTGACCATCCTCTCCACGCGTGTGGGGGTGGTGCTAGGAGGAGAGGGggcggaggaggaagatgaggactTGGGCAGTGTCCATGGTTATGAcggctccctctctccctgcccatcCTCTGTCGTCCTGCCCCTCTCCACCTCACCCGTTCCACTGCAACGTGACCTTTACCCTCATGACCACTACCCCCGCTGTGACCCTGACAGGCTCCGTCCCCTTCAGCTGGCCAAGGAGGAGCACGAGCAGGTCATGACCAATCATAGAAAGATGGGCGTATacctggaggagaagagggaggggctAAAGAGGAAGCAGGAACTGGAGGAGGAGCTTCTGAGAGCAAAAATCAAAGTAGAGAAACTGAGGGCAGCCAGGCTGAGACATGGACTTCCACTGCCCCTATAACTAACACACCCATGGCCTGACTGGGCTGACCATATGGAACTCAGGAGGATGCTCTGAactgtttctatgtctgtgtTTAGCGTGTGGAAGAGGGGTTTGGCCCGAGAAATAATGTTTGTGTGATGAACAGTGAGTTTGAGGGAggatttaaaggtccaatgcagccttctctctcaaatcatttctgggtaacaatgaattacattactgtgattgttttctatTAAAATGCTCAAAAAGA

Function

NR:

description
fibrinogen silencer-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967053.1 True 2140 mRNA 0.52 2 6367321 6372061

Neighbor

gene id symbol gene type direction distance location
LOC110534138 LOC106605946 coding downstream 17620 6329602 ~ 6349701 (-)
LOC118944879 LOC106605946 coding downstream 33586 6332975 ~ 6333735 (-)
LOC118936454 LOC106605946 coding downstream 34607 6328094 ~ 6332714 (-)
LOC110535663 cdh17 coding downstream 41669 6299997 ~ 6325652 (-)
LOC110535643 tex10 coding downstream 107505 6228912 ~ 6259816 (-)
LOC110507893 LOC100380651 coding upstream 26113 6398174 ~ 6425294 (-)
epb41l4b LOC106605949 coding upstream 82772 6454833 ~ 6479408 (-)
LOC110508108 NA coding upstream 96290 6468351 ~ 6470134 (-)
LOC110507902 LOC106593870 coding upstream 107482 6479543 ~ 6491729 (-)
cf191 cf191 coding upstream 124634 6496695 ~ 6499580 (-)
G219819 NA non-coding downstream 35327 6327177 ~ 6331994 (-)
G219811 NA non-coding downstream 67495 6299330 ~ 6299826 (-)
G219810 NA non-coding downstream 73431 6290618 ~ 6293890 (-)
G219808 LOC106606054 non-coding downstream 77160 6288099 ~ 6290161 (-)
G219807 NA non-coding downstream 94097 6272494 ~ 6273224 (-)
G219847 NA non-coding upstream 13928 6385989 ~ 6386209 (-)
G219970 fam171a1 non-coding upstream 231121 6603182 ~ 6607008 (-)
G219988 LOC100136012 non-coding upstream 266879 6638940 ~ 6642155 (-)
G219999 NA non-coding upstream 287684 6659745 ~ 6660111 (-)
G219820 LOC106605946 other downstream 28508 6332968 ~ 6338813 (-)
G219592 NA other downstream 615227 5751724 ~ 5752094 (-)
G219591 NA other downstream 618607 5748158 ~ 5748714 (-)
G219500 NA other downstream 679030 5687725 ~ 5688291 (-)
LOC110508304 gtpbp10 other upstream 557930 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 576737 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 580498 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 595020 6967081 ~ 6970500 (-)

Expression


Co-expression Network