LOC110489435 (LOC106570746)


Basic Information

Item Value
gene id LOC110489435
gene name LOC106570746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6377288 ~ 6399616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967042.1
CTCTAGTTCGGTCGTCTTGCGATAAGAAACACAATCTGCCGCTGTCAGCCGGTGTCGTGCCGGTAGGTAAAAACGAGTGTACAGTTTGACTTCTAAATAATCTGATTTTCGCCGGTTGATGCCATGGTTAATTTAACCGATTTACGATAATAGCCTGCCTGCCCTACAGTAGGACAGACTCATTTATGAAACCGATCGATATTGATTGCATGGATATTTGTGTTATAAAATGTCACGTCAATTTGAAGGAGTTTGCGGAATTAAATGATGATTCCAATTGAGATGCACTGAGCCCTGGTGCTGGCTGCCTGGGCAGAGGATCCCTGTTGCTAGGGAGACTTCACCACAGAGACATGGCACTTGAGAGAGCAAATAGAGGAGGGGCCAGAAGAAACCCTCACCTAGGGTAAActacagagacaggagagagaagaagaggtggagagaggagaggtccaAAGAGGAAGAAAGGActgagggaagagaaggagagtctGTCAGTCTCAGGATGGGTTATGACCTAGAGAGGTTTGTGGGGTACGTGAACGAGGGgcttctgtgctgtgtgtgtcggGATGTGTTGGAGCGCCCCCTCCAGGCCCCTTGTGAACATGCCTACTGCGACGCCTGCATCAGCTCCTGGCTCATACACCACCACTCCTGCCCTGAGGACAGACTTCCACTGGACATCAGCACTCTGAGACCACTGCACAGGTACATGCGTAATGACCTGTCCAGGCTCCAGATCCGTTGTGTTTACTCTGGCCAGGGTTGTGATGCCGTCTGCTGCCTGGAGACACTTCACATACACGAGGACGAGTGTCCATTCACCTTCATATCCTGTTCCTCGACAGGTTGTTCGGtgcaggtggagaggaggggtctAGAGTCTCACCTGTTAGAGTGTGAGTTCCGCAGCAGGGCGTGTCCTAGCGGCTGTGGccacactcccctctctgtagacCAATCACAGCACAACTCTGTTGCGGAGCTACGAACAGAATTGGAGCTGCTCAGGGCAGAGATGTTGGGTAAGGTGGAGGATGTGAGGCGTGAGATGGAGTCGAGGCTGGACTCTCAGAGGAGACACATGGTGCAGAAAGAGTCTCTGCTGAAGAGCGAGGTGGAGGACCTCAAGggccagGTGTCGAGGGTGGTGTGTGATGTGCGGGCTCTCTTGGGGGAAGAGCGCCTGCGGAGACAGGAGCTGGCAGAAGCGGATCTAGAGAAGAGGGAGCTACTGGAGATACTCCGGAGCCTGCAGCCATGCAGGGGACAGCGGAATAGAGACGAGACAATCAGAGGACTGCATCAAGAAGACGGGACAATTAGGAGCCAGCATCAAGTGGAACACCCAACCAGGGGCCTGCTGAGGGCGGGGCCAACACAGGCTTCAACCCAATCACTACCCTCGGCTTTGCCCACTCCAGCCTTATACCCGCCTACCTCCCCACAGCCAGGGGAGGGGTCACGCAAGGCCCGCCCCCGCAGCCTTACCCTCGACTGCATCAAGAGCAGAGAGGTCACCGTCATCTGAGGGGCCATTCCTAATGTTACTGGGTTATGTTCAGTAGGCACAAATGAGAGAAAATGCTTTAACTTCCTCAATTCCTTCTTCATTTAACCGTCACAATTTTTTTAAATCTGGTGTTGCATCTCCTGAACCCACCCTTGATGATTGGCAGATACCTGTGACATTGCTTCAACTCAGAGAAAACCAGCCTTCTGAGATCCTAAATAAAGTCTGCTGAAACACCTCTGATCTCTGTTCCTCTTAAGGTACAATAGTCTTACTCCATCTATTCTAATGGATTGGAATTATATACAGCTCATCATGGATTTCTTACATTGCATATACACCATGCATCAATCCCTCTGTCAATCCAACCATCAATCCATCCATACTAACATACCACAGtgaggaacactaacacactactCCAGACAGCGCTCTCAATCACAGAACTTTATTGAGTCTGAACAACAATGTAAAAGAactaaaacataatacaacaaaTTCCACACATCATCATCAATAGAATCCCACAGAGGACACGTTTCCATGGAGATGATGAACTCATTATTCCTGATTGGTCCGTTAAGAGCCGTGACGGGCTGCAGTCATTGGCCAGGTTTGTTTACCTGGTGAAGGAGCGAACGTGTCGTCCCCTCCCTCCTCCGCTGCCTCCCCCACCGCTAAACTTCCCCCCCTgggaccccctcccccctcctccctgacTCAGCCATGACAGGCCTGTACCCCCACGACCTCGAGGGGCGCGGTCCCGCGGAGCCAGGCGATATGCACctggaagagagggagcgagaagaaCAAGGGTGACCATCAGTAATTGTGCATGAAAGTGTTATCTTGTATTCATGTTGTTCTCtgaatatgtatgtgtgtgcttatACAGTATGTACGTGTGCAaacgagcatgtgtgtgtgtgtacctgcaggcTGCTGGCGTGAGGGCAGGGGGCCGCGTGTGAAGTTGCTCTGCCCGCCCCTGGCATCACTGTATGTTCCTCTGTGGGTAACCGGTGGCAACAGACCACTCCACGACGTGCCACCTCGCCCACCCTCACGGCGGGCATTATAGTTACCTAGAAGGGAGGGGGATGGGAAGACATGTTAGTCAAAGTTTCTTTAAAAGACAACAGACCCACTTGTTAATTTACAGcgatctgtttgtgtgtgtgtgtcaacataCCAGACAGCAGCACTCCTTTAGGCTGCGGTGGGGTGAAAAAGCGTGTCTGCTGGCTGTGGAAAGCAGCCCTGCCTCTGTTCCCAGTGAACAGGCCTCTGGTGGGGGGTTTGGGGGAGCTCTTAGGGGGTCGCTTGGGGGGCAACAGGCCCAGGGGAGTCCCAACATCTTTAAACTCCGCCGCCACAAAGTCATCCACGTGCATGCTGGGAGGGCGCGAAGTGTTCTGTTTGCGCTGCCGGAAGATATCGTTGGAGCGAAAGGGCTGTCCCCCGAAGCCCCCCCTACCTCGACCGCGAGGAGCAGCCATCATGTGGGCTCTCTTAGCTGGCTCGATGTAGTCTGACTTACCActgcagggaggaagaggacgacACAGGCATCTTTGTTAACATGTGGGTCACATACAATCACATTATGTACCTGAAGGtgataaaagtgtgtgtgtgtgtacctggtgatgaaGGTCTCGTGTTTGTGCTTGCCCAGCCTGAAGCCCTTGTTAGTTTTGGTATGACTGGGAGACAAAGGCTCAGACAGGAAGGAGCGTTCCAGCTCTGACTTCAGGTCCAACTCTGGACAACACTCCTGGGCCAGGCCTAGCAGGTCCACCTTcacctagagacagagaggtttactcacacacacacacacacacacacacacacacacacacacacaca

Function

NR:

description
RING finger protein 151-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967042.1 True 3394 mRNA 0.52 7 6377288 6399616

Neighbor

gene id symbol gene type direction distance location
LOC110535685 LOC106606054 coding upstream 87118 6277474 ~ 6290170 (+)
LOC110534143 tmem67 coding upstream 100134 6259904 ~ 6277154 (+)
LOC110535707 LOC106574428 coding upstream 123047 6248078 ~ 6254241 (+)
LOC110534148 invs coding upstream 148368 6174662 ~ 6228920 (+)
LOC110535756 stx17 coding upstream 219348 6129251 ~ 6157940 (+)
LOC110508031 esrp1 coding downstream 26518 6426134 ~ 6448961 (+)
LOC110508070 NA coding downstream 92598 6492214 ~ 6496204 (+)
LOC110507908 LOC106605953 coding downstream 99929 6499545 ~ 6510342 (+)
LOC110508080 LOC106606035 coding downstream 113676 6513292 ~ 6527389 (+)
LOC110520771 fam171a1 coding downstream 161373 6560989 ~ 6607009 (+)
G218807 NA non-coding upstream 22808 6353777 ~ 6354480 (+)
G218801 NA non-coding upstream 35110 6341950 ~ 6342178 (+)
G218798 LOC106605946 non-coding upstream 38520 6328378 ~ 6338768 (+)
G218794 NA non-coding upstream 58853 6307822 ~ 6318435 (+)
G218793 NA non-coding upstream 70050 6305767 ~ 6307238 (+)
G218839 NA non-coding downstream 34831 6434447 ~ 6439646 (+)
G218842 LOC106605951 non-coding downstream 50722 6450338 ~ 6455202 (+)
G218862 NA non-coding downstream 117252 6516868 ~ 6545971 (+)
G218892 NA non-coding downstream 157161 6556777 ~ 6609484 (+)
LOC110508220 sc61b other upstream 413492 5957257 ~ 5963980 (+)
LOC110507851 acbd7 other downstream 224968 6624575 ~ 6631601 (+)
G218971 NA other downstream 318012 6717628 ~ 6719163 (+)
LOC110507732 LOC106576036 other downstream 394944 6794547 ~ 6811294 (+)

Expression


Co-expression Network