epb41l4b (LOC106605949)


Basic Information

Item Value
gene id epb41l4b
gene name LOC106605949
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6454833 ~ 6479408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967155.1
GGAGTCGCCTGCACATATCAAAACATTGTAGGAGTCGAGTCCTACAGGCTGCAGTGCAGTTAGACCCCATTTAAACACATTCCTGTGACCTGCCTTAGACGCACGCTCCAGTTCAGTGTCAACATAAGTCCCAGACCATGTTGTATATTCTACTGATATCATAGAAAGATTTGAGTGGCAGAGTAGCCATTACTACTAAACAACCATAGCAGGCAGATATCCAGAGTTAGTCAAATTAATATATTTGTTTTAGGAGAGGTGaactctctgcactttcactggtgtgtgtgtttctttctgcTTGAATCCCTCGGCTAAACCATAATCCTTACGGTTTGTTCTGAAATTGCATTATTTTTTGCTTGTCCTCAACATTACATTGTCCCTCTTGTTGTTTTGTCCTCCACCGCGCTGACCGTGGTGTCGCCTCTGGCCGGCAGGGAGCGCTGCTTCGCTGACAGCCTGGCCCcagtatatattaaaaaaaagttTGTTCTGCGTTGTTTTTACGCAGGCGCAAAGCATGCCGTTTGTCCAGTTTCTCTGGTTGACTTACCTGTGAGGTGGAGCAGCTTCGGTTCTTCGTGAGAGGATTAAATAATACCGGCCACGGGTTTGGGTAAACGCGTCCCGGGAGACTGTAACCTCATTCCTAGCTATGTGAGACTATAGGGACGCCCGCTGCGGAGCTGCTCGAGATTTCTCCAGGATTTCAGAATCTGTGCAACAGCAGGTGCGCGAGCGGGGACAAACGGCGAGAGGAGACGACGAGGGGGGGGGATGTGCTTCCGTGAGTGAGTACACTATTGAAACAGAATAAATTATTGGGAAATTCAACTGGTTGCTTTTCTTAATGCCAAATTGTCGGGTCCTGCTTAATTATGCGGCTGGTGATCCCCACGGCTGCCGAATTTCAGGATTCAGCGGCAGCCTGAAGCCTCCGTGCCTGCGGTGAGGGACTCTTCGCCCCGGGGTGGTGGCAGTGGGACAAACGCCACACATTGTTTCCGTGTAGTAAGCCTCCCCGTGGACACCGAACACGGTGCTCGCGCTGTGGGTAAAATTAACAATTGGAAAGATGATGGGCTTCCTACGCCGGACGTTCAGCCACCGCTCGCGCAGACGGTTTCAGACAGCGGACGAGTGGGAcgggaaaggaagagggggaacCGCGAACCCCGCGCTCCTCGCGCACCAGCAGCAGGTCGTCCACGCGCCCGCGGTGGTGACCGGGGGAGCGGCCGTGCACATCCCAGCGGCTGGGACCGAGAAGGATGCAATCACCTGCCGCGTGCTGCTGCTGGATGGGTCGGACGTTAACGTGGATATACCAAAAAGGTCAAAGGGCCAGGAGCTGTTTGACCAGATCAGGTATCATCTGGACCTGGTGGAGGCTGACTACTTTGGACTGCAGTTCATGGACCCAGAACAAGTCTCACACTGGCTGGATGTGTCCAAGCCCATAAAGAAACAGATCAGAGaTGGTCCTCCATACAGACTGTTTTTCAGGGTGAAGTTCTACTCCTCAGAGCCCAATAACCTACATGAGGAGTTCACCAGGTACCTGTTTGTGCTGCAGCTTCGACAAGACATTCTGTCCGGCAAgttgAAGTGTCCATATGATGTCTCAGTAGACCTGGGGGCCTACTGCTTACAGAgtgagctGGGGGACTGTGACCCTCTAGAGCATTCTCCTGAGCTGGTGTCAGAGTTTCGCTTCACACCCAAACAGAGTGAGACCATGGAGGCAGACATCTTTAACAAGTGGGTGGACCTAAGGGGTACGGatccatcccagacagagaccAGCTTCCTCAACAAGTGTAAATGGCTGGAGCTGTACGGAGTGGACATGCACTTTGTCAAGGGAAGGGACGGAGCTGAGTACGCCCTGGGTCTGACTCCCACTGGCATCCTGGTGTTTGAGGGCTCCACCAAGATAGGCCTCTTcttctggcccAAGATCACCCGCCTGGATTTCAAAAAGAGTCGACTCACCCTAGTGGTGACGGAGGACGATGATCAGGGGCGGGAGCAGGAGCACACCTTTGTGTTCCAGTTGGACAGTTCGAAGACGTGTAAACACTTGTGGAAATGTGCTGTGGAGAGCCACGCCTTCTTCCGGCTGCGCCAGCCCACAGCTGGGAAGGCCTCCAGCAGTGACTTCACACGCCTTGGATCACGTTTCAGGTTCAGtgGAAAGACTGAGTACCAGGCGACCCACGGAGGGAGGCTGAGGAGGGCCAGTACGTTTGAGAGGCGACCCAGCAAGAGATACCCGTCTCGCACTCACTCACTGGGTGGCAAGGccctcTCTCCAGCCAAACCACCACATATCAGCGCCCACACCAGCCCCGAACCTAGTCTACACccaTACCAGCGTAACATCCCTATAGCCCATGAGCCTTGGCACCCAGCCCTCACACCCCCCATCTACCTACAACACTCAGGACACACATCCCCGcacagTTTCCCTCGGCGTGGTCCTGTCCTGGGAGGGGAGCAGCAGTTCAGTGTTGAGGAGAACGAGACGCCGTACTCTGGAAGCATACACCATCtccactgcagacacacacactacgacAACAGCCAGGAGActtactgtcacacacacagcaagaaCAaacaCAGAGCCCCTCCCTGTCCTGTAGATGAGTTGGAGCTCTGTCTGCTCAACCCCCTGGAGACAGACAGCAACACCTCTCCCTGGCCTACACTACATGTCAACATGGACAACAAGGCAGAGGAGAAGCAGTTGTCTGAGAAGtctctccagccctcctctccccgcAGCTCTCCAGACCATCTCAAGTGTAACATCTACAAAGCACAGATGGAGGCTGTCTATAGAGATGCTCCGCTGACGCCCAGAGGGAAGACCTGTAGTCTGGAGATCAATGACAGGTATCAGAGCTCCAGTCAGGACTCTCGAGACTCTGCCACTTCCAGTCTGACCACAGAGAAAACCTCCCTCCGCCCCGACCACAACTCAACCACAGACAGACCCGCcaagtctaaccctaacaccaaccGCAGGAAAAGACTGGTCAGGCAGTTCAGCTTtaaccatgaggacgAGGATAATCTCCCAGAGGCACTTGCAGCGATCTCTTCCCGGAGCACTGGGAAGTGTGGCTCTAACAACTCACTGGACAACCAGACACAACCCTCCATATACCCTcaggaaacaaacacacagaTGGACATGCCGATACTGGAGCTGAGGAGTCCATGCTGTGAGCGttctcactctccctacctctccccttccttctaccacacctccatccctcccctggtaccctgcctctcctctcacaccaacagcGAGGAGGAGATGAGGTTGGGCAGAGAGAAGATTCTCAGGGCTCTCCTGATGACGGAGCTCTGAGTCCGTGACCCCTGTGACATCATGAATGCCTCATGGACCTGGTGTGAGACGACCTTCAGGAGTCCCACGTCCACTGGCTGCACTCAGCAGTCAGCATTTACTGTACATAATGCAGTCAACCTTTGTAGATTTGCATACAAAAGAATTTGCTTAACTGTTATTTTAAAAGGAACATGTTTTATGTCtacccacactacacaccctgtaataacatgctcccccactacacaccctgtaataacatgctcccacactacacaccctgtaataacatgctcccacactacacaccctgtaataacatgctcccc

Function

NR:

description
band 4.1-like protein 4B

GO: NA

KEGG:

id description
K21111 EPB41L4B, EHM2, LULU2; band 4.1-like protein 4B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967155.1 True 3702 mRNA 0.53 23 6454833 6479408

Neighbor

gene id symbol gene type direction distance location
LOC110507893 LOC100380651 coding downstream 29539 6398174 ~ 6425294 (-)
LOC118944880 rad54b coding downstream 77651 6354095 ~ 6377182 (-)
LOC110487828 LOC106570748 coding downstream 82772 6367321 ~ 6372061 (-)
LOC110534138 LOC106605946 coding downstream 105132 6329602 ~ 6349701 (-)
LOC118944879 LOC106605946 coding downstream 121098 6332975 ~ 6333735 (-)
LOC110507902 LOC106593870 coding upstream 135 6479543 ~ 6491729 (-)
cf191 cf191 coding upstream 17287 6496695 ~ 6499580 (-)
LOC110508127 NA coding upstream 47767 6527175 ~ 6550398 (-)
LOC110507876 rpp38 coding upstream 142763 6622171 ~ 6623967 (-)
LOC110507843 LOC106576069 coding upstream 177105 6656513 ~ 6656888 (-)
G219822 NA non-coding downstream 47765 6344657 ~ 6407068 (-)
G219847 NA non-coding downstream 68624 6385989 ~ 6386209 (-)
G219819 NA non-coding downstream 122839 6327177 ~ 6331994 (-)
G219811 NA non-coding downstream 155007 6299330 ~ 6299826 (-)
G219810 NA non-coding downstream 160943 6290618 ~ 6293890 (-)
G219970 fam171a1 non-coding upstream 123774 6603182 ~ 6607008 (-)
G219988 LOC100136012 non-coding upstream 159532 6638940 ~ 6642155 (-)
G219999 NA non-coding upstream 180337 6659745 ~ 6660111 (-)
G219933 NA non-coding upstream 232772 6712180 ~ 6783455 (-)
G219820 LOC106605946 other downstream 116020 6332968 ~ 6338813 (-)
G219592 NA other downstream 702739 5751724 ~ 5752094 (-)
G219591 NA other downstream 706119 5748158 ~ 5748714 (-)
G219500 NA other downstream 766542 5687725 ~ 5688291 (-)
LOC110508304 gtpbp10 other upstream 450583 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 469390 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 473151 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 487673 6967081 ~ 6970500 (-)

Expression


Co-expression Network