LOC110508108


Basic Information

Item Value
gene id LOC110508108
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6468351 ~ 6470134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040318.1
cagtctgtaggtgtctggataagaacagtctgtaggtgtctggataagaacagtctgtaggtgtctggataagaacagtctgtaggtgtctgaacagtctgtaggtgtctggataAGAACACAGGACAGGTGATAACCACATGAACAATGTCTGGTTCTTTAACATCATGCAGGTAGAGGAGTGTATCACTCTGGTGTTTTCTAGTGCTGTATCAAACCTATGTAaatcaccctctctttccctctctctctggtgtctgtctgaacagtctgtaggtgtctgaacagtctgtaggtgtctggataAGAACACAGGACAGGTGATAACCACATGAACAATGTCTGGTTCTTTAACATCATGCAGGTAGAGGAGTGTATCACTCTGGTGTTTTCTAGTGCTGTATCAAACCTATGtaaatcaccctctctctccctctctctctggtgtctgtctgaacagtctgtaggtgtctgaacagtctgtaggtgtctggataAGAACACAGGACAGGTGATAACCACATGAACAATGTCTGGTTCTTTAACATCATGCAGGTAGAGGAGTGTATCACTCTGGTGTTTTCTAGTGCTGTATCAAACCTATGtaaatcaccctctctctccctctctctctggtgtctgtctgaacagtctgtaggtgtctggataagaacagtctgtaggtgtctgaacagactgtaggtgtctggataaGAACACAGGACAGGTGATAACCACATGAACAATGTCTGGTTCTTTAACATCATGCAGGTAGAGGAGTGTATCACTCTGGTGTTTTCTAGTGCTGTATCAAACCTATGtaaatcaccctctctctccctctctctggtgtctgtctgaacagtctgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040318.1 True 872 mRNA 0.44 3 6468351 6470134

Neighbor

gene id symbol gene type direction distance location
LOC110507893 LOC100380651 coding downstream 43057 6398174 ~ 6425294 (-)
LOC118944880 rad54b coding downstream 91169 6354095 ~ 6377182 (-)
LOC110487828 LOC106570748 coding downstream 96290 6367321 ~ 6372061 (-)
LOC110534138 LOC106605946 coding downstream 118650 6329602 ~ 6349701 (-)
LOC118944879 LOC106605946 coding downstream 134616 6332975 ~ 6333735 (-)
LOC110507902 LOC106593870 coding upstream 9409 6479543 ~ 6491729 (-)
cf191 cf191 coding upstream 26561 6496695 ~ 6499580 (-)
LOC110508127 NA coding upstream 57041 6527175 ~ 6550398 (-)
LOC110507876 rpp38 coding upstream 152037 6622171 ~ 6623967 (-)
LOC110507843 LOC106576069 coding upstream 186379 6656513 ~ 6656888 (-)
G219822 NA non-coding downstream 61283 6344657 ~ 6407068 (-)
G219847 NA non-coding downstream 82142 6385989 ~ 6386209 (-)
G219819 NA non-coding downstream 136357 6327177 ~ 6331994 (-)
G219811 NA non-coding downstream 168525 6299330 ~ 6299826 (-)
G219810 NA non-coding downstream 174461 6290618 ~ 6293890 (-)
G219970 fam171a1 non-coding upstream 133048 6603182 ~ 6607008 (-)
G219988 LOC100136012 non-coding upstream 168806 6638940 ~ 6642155 (-)
G219999 NA non-coding upstream 189611 6659745 ~ 6660111 (-)
G219933 NA non-coding upstream 242046 6712180 ~ 6783455 (-)
G219820 LOC106605946 other downstream 129538 6332968 ~ 6338813 (-)
G219592 NA other downstream 716257 5751724 ~ 5752094 (-)
G219591 NA other downstream 719637 5748158 ~ 5748714 (-)
G219500 NA other downstream 780060 5687725 ~ 5688291 (-)
LOC110508304 gtpbp10 other upstream 459857 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 478664 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 482425 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 496947 6967081 ~ 6970500 (-)

Expression


Co-expression Network