LOC110507908 (LOC106605953)


Basic Information

Item Value
gene id LOC110507908
gene name LOC106605953
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6499545 ~ 6510342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967150.1
CTTGCTGTACCTATTGATCATCGATAGTTGTGTGCTCAAGTTTACCGAGATCCAAAGTTGTCAGGCAGCGTTCATTGAACGCATGCGCATTGCATCCACTATCCAGCTCAAAATAAGAGTTAAAACAGAAACGAGgaggaggagagcagggagagatgaCTGACACCCCGCCCAGCGATGGCCCCTCCCAGGGGGCAGAGTTTGACATGATGGGCGCTCTGGACTGGCAGGACGGTATCGCCACACTGCCTGGCAGCGACATcaagTTCCGTATGACAGAGTTTGGAACTTTGGAGATCGTGACAGAGCCAGAGGTCAAAGAGTCAGGGCCAACCCCCCAGAACCCCGCCCAGTCGAAAAGCCCCACCCCTCCACCAGAGGCCCAATCAGAGAGCAGTGCAGCCTCTTCTGCAGCCAAGGAAGTCCAGCCACTTGCACCTAAGGCTCAAGGCCCTGTGCTTCTGTCTCTAGAGGAGGGTCCCACTGTGGAGGGTCCCATGGCGGAGGAGCCCAGGGCGGAGGTAGGCCCCGAGGCGGAGGGAGGCCCCAGGGCTGTGATGGCTAGCTGTAGGTCGTGTGGGGGCTCCGGTCCACTGGAGAGTTTCCTCCAGGGCAAATACTGCAGCTCCATTTGTGTCCAGCCCTCCAGTGGCAGGTCATCACCCagagagcggagggagagagaggggggggaggggggactgGGGAAACGagtgaggaagaagaggaagatctACATGGACTCTGGTGATGAAGAGGAAGACAaccaggaggaggaagaggacAAGTCCAAGGCTGTCAAAGGGAGGAGAGCTGCTAAGCTGGCCAAGCTAGTGACAGCCCCACCCAATAAGAAGCGACCCTGGAGCTGGCCCTCCtacatggaggaggagaaggctaTAGCTGCCCCCCTTAAACTGTTCAAGGAGCACCAGTCGTTCCCTCAGAGCAGGAATGCCTTCAAAGTGGGGATGAAGTTAGAAGGACTGGACCCCTGtcacccctctctgttctgtGTGCTCAGTGTTGCTGAGatcCAGGGTTATAGGGTAAGGCTTCATTTCGACGGGTATCCAGAGTGCTATGACTTCTGGGTAAATGCTGACACCTGGGATGTGAAGCCGGCGGGCTGGTGTGAGAAGATGGGACACAAGCTGCTACTGCCTaaagGTTGTAAGGATGGGGAGTTCAACTGGAACATGTATGTGAAGAACTGCAGAGGTCAGCTGGCCCCCAAACACCTCTTCAAGAGCCTCAACACGtcGGTGACTCCGTCAGGGTTCCGTGCGGGTATGAAGCTAGAGGCGGTGGATAAGAAGAACCCATATCTGATCTGCGTAGCGTCCATCGCGGCTGCTGTTGACAACAGACTCCTCATACACTTTGACAACTGGGACGACACCTATGACTACTGGTGTGATGCCAGCAGTCCCTACATCCACCCTGTAGGCTACTGTGAGGAGGCTGAGCTGACCCTCACCACCCCtgctgAGTATAAGCACCCGAGGAGTTTTTCCTGGGATAAATACATGGAGGAGACTGGCACACAGGCAGCCCCTGCACGTGCCTTCAAACTGCGTCCGTGCCATGGGTTCCAGGCTGGAATGAAGCTGGAAGCTGTCGATAAGAGGAATCCCATGCTCATCCGCGTAGCAACCATCGCAGAGGTGGAGGACCACCGACTGAGGatCCATTTTGATGGCTGGAGTGAGGAGTACGACTACTGGGTGGATGCTGACTGCCCAGACCTGCACCCTGTGGGCTGGTGTCAGAAGACTAGTCATCCCCTACAACACCCCTCCAATGGCTCCACTGATATGCTGGTCCTCCCAGGGCAGGGCTGTCCTACCCCAGGATGCAATGGGGTAGGTCACATCCGAGGACCCCGCTACGGAACCCACTACACgggggtgagCTGTCCGTACTCGGAGATGAACCTGAACAGGGAGGGCCAGGTACCAGACCGTCTGAGTGGAGAACGACCTATGACCCTGAGTGGGCCTCATCACCGTGGGCGACGCCCAGACCCTCCTCCACACACCCAGACAAACAGCCCCACCACACCGGAGCAGCCCGAGCCTGCAGACGACTCCCCTCAGACCAGtgtaaCTAGGAGGCCGACGGTTGACGAGGGCGAACAATCCAGGTGCAGCAGTCAGAGTGAGCCACCAGGGGGCTCCACTGAGCCCATCAACGACGGAGCCAAGGCCAAGAGGTCTGCTCCAGTCCCAAAGTATCTGAAGCTGCACGTCGTCAAGCAGGAGAGTGGAGATGGGAAAGactccctgtctctccagcaGGCGCTCCATGAGTCAGTGTTCTCCCCGGGtggctcctcctctccccctcacagGGTGGCTCTGTGCTGGGACAAACACTGCCAGCTGCTCCCTGAGGTCCTGGGCCTCACAGCTAAGAGAGTTGCAACCTGGACCGCCGACGAGGTGGCCAGTTTTGTCAAAGGGCTCCCAGGCTGCAAAGAGCATGCTGCCACCTTCAGGACAGAGCAAATGGATGGAGAGGCCTTCCTGCTTCTCACCCAAGCAGACATAGTCAAGATCCTGTCAATCAAACTAGGCCCTGCCCTCAAGATATACAACGCCATACTCATGCTGAAGAACGCTGATGAGGAGTGAGACGCCCCCTCACGCTTCATTTCCTCCCACACCCGACCGCTGTATCTGAATAGTCTAGAGAAGTTTAATCTCCTTTTTTTGTCTCCTCACCTTATCCTCTTTGgtcttcatctgcactgatctgagCCCGTAGGATAGGTCAGAGCAACGTAATGGATGGCCACCAGGAATCTGCTTTCAGCTATCCTGTTCTTCCACAtcagtgtagaggagtagagagaatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgt
>XM_021588331.2
ATTGATCATCGATAGTTGTGTGCTCAAGTTTACCGAGATCCAAAGTTGTCAGGCAGCGTTCATTGAACGCATGCGCATTGCATCCACTATCCAGCTCAAAATAAGAGTTAAAACAGAAACGAGtgcaggaggaggagagcagggagagatgaCTGACACCCCGCCCAGCGATGGCCCCTCCCAGGGGGCAGAGTTTGACATGATGGGCGCTCTGGACTGGCAGGACGGTATCGCCACACTGCCTGGCAGCGACATcaagTTCCGTATGACAGAGTTTGGAACTTTGGAGATCGTGACAGAGCCAGAGGTCAAAGAGTCAGGGCCAACCCCCCAGAACCCCGCCCAGTCGAAAAGCCCCACCCCTCCACCAGAGGCCCAATCAGAGAGCAGTGCAGCCTCTTCTGCAGCCAAGGAAGTCCAGCCACTTGCACCTAAGGCTCAAGGCCCTGTGCTTCTGTCTCTAGAGGAGGGTCCCACTGTGGAGGGTCCCATGGCGGAGGAGCCCAGGGCGGAGGTAGGCCCCGAGGCGGAGGGAGGCCCCAGGGCTGTGATGGCTAGCTGTAGGTCGTGTGGGGGCTCCGGTCCACTGGAGAGTTTCCTCCAGGGCAAATACTGCAGCTCCATTTGTGTCCAGCCCTCCAGTGGCAGGTCATCACCCagagagcggagggagagagaggggggggaggggggactgGGGAAACGagtgaggaagaagaggaagatctACATGGACTCTGGTGATGAAGAGGAAGACAaccaggaggaggaagaggacAAGTCCAAGGCTGTCAAAGGGAGGAGAGCTGCTAAGCTGGCCAAGCTAGTGACAGCCCCACCCAATAAGAAGCGACCCTGGAGCTGGCCCTCCtacatggaggaggagaaggctaTAGCTGCCCCCCTTAAACTGTTCAAGGAGCACCAGTCGTTCCCTCAGAGCAGGAATGCCTTCAAAGTGGGGATGAAGTTAGAAGGACTGGACCCCTGtcacccctctctgttctgtGTGCTCAGTGTTGCTGAGatcCAGGGTTATAGGGTAAGGCTTCATTTCGACGGGTATCCAGAGTGCTATGACTTCTGGGTAAATGCTGACACCTGGGATGTGAAGCCGGCGGGCTGGTGTGAGAAGATGGGACACAAGCTGCTACTGCCTaaagGTTGTAAGGATGGGGAGTTCAACTGGAACATGTATGTGAAGAACTGCAGAGGTCAGCTGGCCCCCAAACACCTCTTCAAGAGCCTCAACACGtcGGTGACTCCGTCAGGGTTCCGTGCGGGTATGAAGCTAGAGGCGGTGGATAAGAAGAACCCATATCTGATCTGCGTAGCGTCCATCGCGGCTGCTGTTGACAACAGACTCCTCATACACTTTGACAACTGGGACGACACCTATGACTACTGGTGTGATGCCAGCAGTCCCTACATCCACCCTGTAGGCTACTGTGAGGAGGCTGAGCTGACCCTCACCACCCCtgctgAGTATAAGCACCCGAGGAGTTTTTCCTGGGATAAATACATGGAGGAGACTGGCACACAGGCAGCCCCTGCACGTGCCTTCAAACTGCGTCCGTGCCATGGGTTCCAGGCTGGAATGAAGCTGGAAGCTGTCGATAAGAGGAATCCCATGCTCATCCGCGTAGCAACCATCGCAGAGGTGGAGGACCACCGACTGAGGatCCATTTTGATGGCTGGAGTGAGGAGTACGACTACTGGGTGGATGCTGACTGCCCAGACCTGCACCCTGTGGGCTGGTGTCAGAAGACTAGTCATCCCCTACAACACCCCTCCAATGGCTCCACTGATATGCTGGTCCTCCCAGGGCAGGGCTGTCCTACCCCAGGATGCAATGGGGTAGGTCACATCCGAGGACCCCGCTACGGAACCCACTACACgggggtgagCTGTCCGTACTCGGAGATGAACCTGAACAGGGAGGGCCAGGTACCAGACCGTCTGAGTGGAGAACGACCTATGACCCTGAGTGGGCCTCATCACCGTGGGCGACGCCCAGACCCTCCTCCACACACCCAGACAAACAGCCCCACCACACCGGAGCAGCCCGAGCCTGCAGACGACTCCCCTCAGACCAGtgtaaCTAGGAGGCCGACGGTTGACGAGGGCGAACAATCCAGGTGCAGCAGTCAGAGTGAGCCACCAGGGGGCTCCACTGAGCCCATCAACGACGGAGCCAAGGCCAAGAGGTCTGCTCCAGTCCCAAAGTATCTGAAGCTGCACGTCGTCAAGCAGGAGAGTGGAGATGGGAAAGactccctgtctctccagcaGGCGCTCCATGAGTCAGTGTTCTCCCCGGGtggctcctcctctccccctcacagGGTGGCTCTGTGCTGGGACAAACACTGCCAGCTGCTCCCTGAGGTCCTGGGCCTCACAGCTAAGAGAGTTGCAACCTGGACCGCCGACGAGGTGGCCAGTTTTGTCAAAGGGCTCCCAGGCTGCAAAGAGCATGCTGCCACCTTCAGGACAGAGCAAATGGATGGAGAGGCCTTCCTGCTTCTCACCCAAGCAGACATAGTCAAGATCCTGTCAATCAAACTAGGCCCTGCCCTCAAGATATACAACGCCATACTCATGCTGAAGAACGCTGATGAGGAGTGAGACGCCCCCTCACGCTTCATTTCCTCCCACACCCGACCGCTGTATCTGAATAGTCTAGAGAAGTTTAATCTCCTTTTTTTGTCTCCTCACCTTATCCTCTTTGgtcttcatctgcactgatctgagCCCGTAGGATAGGTCAGAGCAACGTAATGGATGGCCACCAGGAATCTGCTTTCAGCTATCCTGTTCTTCCACAtcagtgtagaggagtagagagaatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgt
>XM_036967143.1
ATTGATCATCGATAGTTGTGTGCTCAAGTTTACCGAGATCCAAAGTTGTCAGGCAGCGTTCATTGAACGCATGCGCATTGCATCCACTATCCAGCTCAAAATAAGAGTTAAAACAGAAACGAGtgcaggaggaggagagcagggagagatgaCTGACACCCCGCCCAGCGATGGCCCCTCCCAGGGGGCAGAGTTTGACATGATGGGCGCTCTGGACTGGCAGGACGGTATCGCCACACTGCCTGGCAGCGACATcaagTTCCGTATGACAGAGTTTGGAACTTTGGAGATCGTGACAGAGCCAGAGGTCAAAGAGTCAGGGCCAACCCCCCAGAACCCCGCCCAGTCGAAAAGCCCCACCCCTCCACCAGAGGCCCAATCAGAGAGCAGTGCAGCCTCTTCTGCAGCCAAGGAAGTCCAGCCACTTGCACCTAAGGAGGAGGGTCCCACTGTGGAGGGTCCCATGGCGGAGGAGCCCAGGGCGGAGGTAGGCCCCGAGGCGGAGGGAGGCCCCAGGGCTGTGATGGCTAGCTGTAGGTCGTGTGGGGGCTCCGGTCCACTGGAGAGTTTCCTCCAGGGCAAATACTGCAGCTCCATTTGTGTCCAGCCCTCCAGTGGCAGGTCATCACCCagagagcggagggagagagaggggggggaggggggactgGGGAAACGagtgaggaagaagaggaagatctACATGGACTCTGGTGATGAAGAGGAAGACAaccaggaggaggaagaggacAAGTCCAAGGCTGTCAAAGGGAGGAGAGCTGCTAAGCTGGCCAAGCTAGTGACAGCCCCACCCAATAAGAAGCGACCCTGGAGCTGGCCCTCCtacatggaggaggagaaggctaTAGCTGCCCCCCTTAAACTGTTCAAGGAGCACCAGTCGTTCCCTCAGAGCAGGAATGCCTTCAAAGTGGGGATGAAGTTAGAAGGACTGGACCCCTGtcacccctctctgttctgtGTGCTCAGTGTTGCTGAGatcCAGGGTTATAGGGTAAGGCTTCATTTCGACGGGTATCCAGAGTGCTATGACTTCTGGGTAAATGCTGACACCTGGGATGTGAAGCCGGCGGGCTGGTGTGAGAAGATGGGACACAAGCTGCTACTGCCTaaagGTTGTAAGGATGGGGAGTTCAACTGGAACATGTATGTGAAGAACTGCAGAGGTCAGCTGGCCCCCAAACACCTCTTCAAGAGCCTCAACACGtcGGTGACTCCGTCAGGGTTCCGTGCGGGTATGAAGCTAGAGGCGGTGGATAAGAAGAACCCATATCTGATCTGCGTAGCGTCCATCGCGGCTGCTGTTGACAACAGACTCCTCATACACTTTGACAACTGGGACGACACCTATGACTACTGGTGTGATGCCAGCAGTCCCTACATCCACCCTGTAGGCTACTGTGAGGAGGCTGAGCTGACCCTCACCACCCCtgctgAGTATAAGCACCCGAGGAGTTTTTCCTGGGATAAATACATGGAGGAGACTGGCACACAGGCAGCCCCTGCACGTGCCTTCAAACTGCGTCCGTGCCATGGGTTCCAGGCTGGAATGAAGCTGGAAGCTGTCGATAAGAGGAATCCCATGCTCATCCGCGTAGCAACCATCGCAGAGGTGGAGGACCACCGACTGAGGatCCATTTTGATGGCTGGAGTGAGGAGTACGACTACTGGGTGGATGCTGACTGCCCAGACCTGCACCCTGTGGGCTGGTGTCAGAAGACTAGTCATCCCCTACAACACCCCTCCAATGGCTCCACTGATATGCTGGTCCTCCCAGGGCAGGGCTGTCCTACCCCAGGATGCAATGGGGTAGGTCACATCCGAGGACCCCGCTACGGAACCCACTACACgggggtgagCTGTCCGTACTCGGAGATGAACCTGAACAGGGAGGGCCAGGTACCAGACCGTCTGAGTGGAGAACGACCTATGACCCTGAGTGGGCCTCATCACCGTGGGCGACGCCCAGACCCTCCTCCACACACCCAGACAAACAGCCCCACCACACCGGAGCAGCCCGAGCCTGCAGACGACTCCCCTCAGACCAGtgtaaCTAGGAGGCCGACGGTTGACGAGGGCGAACAATCCAGGTGCAGCAGTCAGAGTGAGCCACCAGGGGGCTCCACTGAGCCCATCAACGACGGAGCCAAGGCCAAGAGGTCTGCTCCAGTCCCAAAGTATCTGAAGCTGCACGTCGTCAAGCAGGAGAGTGGAGATGGGAAAGactccctgtctctccagcaGGCGCTCCATGAGTCAGTGTTCTCCCCGGGtggctcctcctctccccctcacagGGTGGCTCTGTGCTGGGACAAACACTGCCAGCTGCTCCCTGAGGTCCTGGGCCTCACAGCTAAGAGAGTTGCAACCTGGACCGCCGACGAGGTGGCCAGTTTTGTCAAAGGGCTCCCAGGCTGCAAAGAGCATGCTGCCACCTTCAGGACAGAGCAAATGGATGGAGAGGCCTTCCTGCTTCTCACCCAAGCAGACATAGTCAAGATCCTGTCAATCAAACTAGGCCCTGCCCTCAAGATATACAACGCCATACTCATGCTGAAGAACGCTGATGAGGAGTGAGACGCCCCCTCACGCTTCATTTCCTCCCACACCCGACCGCTGTATCTGAATAGTCTAGAGAAGTTTAATCTCCTTTTTTTGTCTCCTCACCTTATCCTCTTTGgtcttcatctgcactgatctgagCCCGTAGGATAGGTCAGAGCAACGTAATGGATGGCCACCAGGAATCTGCTTTCAGCTATCCTGTTCTTCCACAtcagtgtagaggagtagagagaatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgt
>TU249531
TGAGTGTAACGCTGTGTGGATTATATATTGTCTGTGCATGTCTATTGAAGATATTTACAGCtaatttctcctccctctcccccagactccctgtctctccagcaGGCGCTCCATGAGTCAGTGTTCTCCCCGGGtggctcctcctctccccctcacagGGTGGCTCTGTGCTGGGACAAACACTGCCAGCTGCTCCCTGAGGTCCTGGGCCTCACAGCTAAGAGAGTTGCAACCTGGACCGCCGACGAGGTGGCCAGTTTTGTCAAAGGGCTCCCAGGCTGCAAAGAGCATGCTGCCACCTTCAGGACAGAGCAAATGGATGGAGAGGCCTTCCTGCTTCTCACCCAAGCAGACATAGTCAAGATCCTGTCAATCAAACTAGGCCCTGCCCTCAAGATATACAACGCCATACTCATGCTGAAGAACGCTGATGAGGAGTGAGACGCCCCCTCACGCTTCATTTCCTCCCACACCCGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967150.1 False 2963 mRNA 0.56 21 6499545 6510342
XM_021588331.2 False 2956 mRNA 0.56 21 6499557 6510342
XM_036967143.1 False 2929 mRNA 0.56 21 6499557 6510342
TU249531 True 477 lncRNA 0.55 3 6509194 6510051

Neighbor

gene id symbol gene type direction distance location
LOC110508070 NA coding upstream 3341 6492214 ~ 6496204 (+)
LOC110508031 esrp1 coding upstream 50584 6426134 ~ 6448961 (+)
LOC110489435 LOC106570746 coding upstream 99929 6377288 ~ 6399616 (+)
LOC110535685 LOC106606054 coding upstream 209375 6277474 ~ 6290170 (+)
LOC110534143 tmem67 coding upstream 222391 6259904 ~ 6277154 (+)
LOC110508080 LOC106606035 coding downstream 2950 6513292 ~ 6527389 (+)
LOC110520771 fam171a1 coding downstream 50647 6560989 ~ 6607009 (+)
nmt2 LOC106576081 coding downstream 100757 6611099 ~ 6620958 (+)
LOC110507851 acbd7 coding downstream 114233 6624575 ~ 6631601 (+)
LOC118936368 NA coding downstream 121772 6632114 ~ 6635038 (+)
G218842 LOC106605951 non-coding upstream 44343 6450338 ~ 6455202 (+)
G218839 NA non-coding upstream 59899 6434447 ~ 6439646 (+)
G218805 NA non-coding upstream 92459 6344845 ~ 6407086 (+)
G218807 NA non-coding upstream 145065 6353777 ~ 6354480 (+)
G218801 NA non-coding upstream 157367 6341950 ~ 6342178 (+)
G218862 NA non-coding downstream 6526 6516868 ~ 6545971 (+)
G218892 NA non-coding downstream 46435 6556777 ~ 6609484 (+)
G218929 NA non-coding downstream 87885 6598227 ~ 6599147 (+)
G218966 NA non-coding downstream 190506 6700848 ~ 6701347 (+)
G218986 NA non-coding downstream 224678 6735020 ~ 6735498 (+)
LOC110535707 LOC106574428 other upstream 245954 6248078 ~ 6254241 (+)
LOC110534148 invs other upstream 288578 6174662 ~ 6228920 (+)
LOC110535756 stx17 other upstream 343408 6129251 ~ 6157940 (+)
G218971 NA other downstream 207286 6717628 ~ 6719163 (+)
LOC110507732 LOC106576036 other downstream 284218 6794547 ~ 6811294 (+)
LOC110520781 osgin2 other downstream 428258 6937600 ~ 6947976 (+)

Expression


Co-expression Network