LOC110508080 (LOC106606035)


Basic Information

Item Value
gene id LOC110508080
gene name LOC106606035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6513292 ~ 6527389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967156.1
GAGGACCAAGATCTCGCATGCGCCGTAGTAGCCTACTCGCCGCTTTAAACCAAGGCTGGACAGATGTTAATATGCAGCCTGGTTGAGGGGTGAAACTCCTGGAAAACATTTTAAAGAGGGAGCTGAAGAGTCAACGCTGATCATATTAATGTAGGGACAAAATAAATAACGGGCATCATGTTGAGAAAATAGTTCCAGATATGGCAGGAGCGACGCGGAAATGTCCACAACCGAGCAACAGCCAAATCGAGTCTGTGGTAGAGGATGACAGCAGAGGGGTCCACTGGAGCGGTCAACGCCGTCTGCACCCAAGACTCCTCCCACTCACCTAAAACAACCTGCCCACAAACCACATGGCCCTGCCCACAGAAGGATGAGCTCGAAGGCAGACTCCGCCTTCGCTCCCCTCCTGGGGCGTGGCTACTAGCGGGCGTTGTCGTGGTGATGGTGGGAATGTTTGTGGCCGTGGCCGGGTACGCTAGCTCCACCCCTAACCCTGTGGGTGGGCGAGGCAGCTCCCACAGCGAGCGAATGAAACTGCTCGGCCCTGTCGTGATGGGCATCGGCCTGTTCATCTTCATCTGTGCTGGAACCCTGCTGTATGAGAACCGGGACCGCGAGAACCGAGAGCGTGAGAACCTTGAGAACCCTGAGGAGCaggggaaacacaaacacaagaaAACAAGGGAATGGCGCCGGGAGAACCGTAATTATGAGGATGTGGAACAGGGGAACCAGAGAGAGCCCTCAGACAGACACTCCCCTCTCCCTGAGGAGTGCCCGCCCCCCCTGCCTCCCAGAGTGCctagacaggaggggtcagagtTGAACGTTCTCTCTGTGGGGGCGCTGAGCTCACTGCTACCAGGGGAGGGACAGGAGCGtgaagagagagtcagagaggtgGGGGGTAAAGGGGGGTCAACCCTGCTGACCAGAGTCCTGCACCACCAGGaccccccctcctcctgtccctccccAGCCCCCTCCTCTGTGTACTCTGACTCCTGTAACTCCAGTGAGATCAACTATAACGTTCAGACAGGCTCCCCTATCCACTCTATTCTCCAACTCTGAGATACTACTGGACTCACATCTGTACACGCTTTTCTAAATAAATGCACCACatattt
>XM_036967157.1
CCAAGATCTCGCATGCGCCGTAGTAGCCTACTCGCCGCTTTAAACCAAGGCTGGACAGATGTTAATATGCAGCCTGGTTGAGGGGTGAAACTCCTGGAAAACATTTTAAAGAGGGAGCTGAAGAGTCAACGCTGATCATATTAATGTAGGGACAAAATAAATAACGGGCATCATGTTGAGAAAATAGTTCCAGATATGGCAGGAGCGACGCGGAAATGTCCACAACCGAGCAACAGCCAAATCGAGATGAGGATGATCAGGAGGAGCAACGGGAGGAGGGGCCTCTGCAGTGTTTCCGCTGTGACCTGGGCTTCTGGGATGCCTGCTACACCACCAAAACCAACTGCAATATCGGAGAGAAGTGCTACACTGGCCGAGGGAAGGCAGGTGATGTGCTGGATGTTAAGTTGCTGGGTTGTGTCAAGGCGAAGGAGTGTGAGCTGGTGACCAATGTGGAGATCTTCTCCAACACAACCATCTACATGATGACAAGGCACTGCTGCGACACACACTTCTGCAACACCGGACACACACTACCCCTCAACACACTTCTCTCCCTGTCACTGACTACAATAACcatcatccacctctcctctccctgacagTGACTACAATAACCATGATCCTCACCTTCAACAGACTACAATAACCACCACGCATCATAAAGTCCCCAGCAGCACACATTTATTCAATTTTCTGTTAATATTCTGTGTTTACTTGTCAAGGAATATGGACAGTAATTAACATATGTGGATGTGCCAGATTGAGGCAAAAGTCTCATGTTCAACCGTTAGAAGCTGTCTCTGGGCTTGGGAAAATTGGTTAGATGGTTTTATGGAATTcaatttttaataaatgtaattTTCTCATTCTGTTGTTGGCATAAACTACAAAAGGAGACTGGATTTTATTTTATCATATTTATAGAACATTCTGAATTGTAACTGAATAACATAATTCAAATTTACATTGTCCTCAATCTTGGTTGGCATATTTTAAACACGTCAAAATTACTTTTATGTTCTCCTCCAAACCTAAATATTTCCATAGAGAATACTACAGTATTTCCCATTGACTTTAGTGTTATGGTAAATCCTAAAGTAGTATGCATCAATCTCTCAGACCCATattcacagatctaggatcatctTAACCTCTCTAAAACCATCAGCATCTTGGGGCAACTTCCTCCTACAGTCAGTGAAGCTGAGGTCATACTGGTATACAGTAGTGTTGCTGTTACATAGACAACAGCAGTACTGGTATACAGTAGCATTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGTGTTGCTGTTAGAGCAGGTCTCCTCCAGAGGGAAGCAGCTCCTCCTTCATGTAGCGCTGCAGATCCACACTCTGGTCCTCAAGGTTCACACACAGAAACTTCttcaccacacaaacacacctgacagggacacacacacaaagaaaacacCTGTGGGTGATTATGCGTATGTATTGCAGGCAGAATAACTTATATAAATGTTCATCTGAGCCATCTTTGTTGC

Function

NR:

description
sperm acrosome membrane-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967156.1 False 1133 mRNA 0.56 2 6513292 6516055
XM_036967157.1 True 2458 mRNA 0.43 3 6513297 6527389

Neighbor

gene id symbol gene type direction distance location
LOC110507908 LOC106605953 coding upstream 2950 6499545 ~ 6510342 (+)
LOC110508070 NA coding upstream 17088 6492214 ~ 6496204 (+)
LOC110508031 esrp1 coding upstream 64331 6426134 ~ 6448961 (+)
LOC110489435 LOC106570746 coding upstream 113676 6377288 ~ 6399616 (+)
LOC110535685 LOC106606054 coding upstream 223122 6277474 ~ 6290170 (+)
LOC110520771 fam171a1 coding downstream 33600 6560989 ~ 6607009 (+)
nmt2 LOC106576081 coding downstream 83710 6611099 ~ 6620958 (+)
LOC110507851 acbd7 coding downstream 97186 6624575 ~ 6631601 (+)
LOC118936368 NA coding downstream 104725 6632114 ~ 6635038 (+)
LOC110507805 LOC106606004 coding downstream 115114 6642503 ~ 6654110 (+)
G218842 LOC106605951 non-coding upstream 58090 6450338 ~ 6455202 (+)
G218839 NA non-coding upstream 73646 6434447 ~ 6439646 (+)
G218805 NA non-coding upstream 106206 6344845 ~ 6407086 (+)
G218807 NA non-coding upstream 158812 6353777 ~ 6354480 (+)
G218892 NA non-coding downstream 29388 6556777 ~ 6609484 (+)
G218929 NA non-coding downstream 70838 6598227 ~ 6599147 (+)
G218966 NA non-coding downstream 173459 6700848 ~ 6701347 (+)
G218986 NA non-coding downstream 207631 6735020 ~ 6735498 (+)
LOC110507743 LOC106605986 non-coding downstream 244950 6754839 ~ 6773064 (+)
LOC110534143 tmem67 other upstream 250935 6259904 ~ 6277154 (+)
LOC110535707 LOC106574428 other upstream 259701 6248078 ~ 6254241 (+)
LOC110534148 invs other upstream 302325 6174662 ~ 6228920 (+)
LOC110535756 stx17 other upstream 357155 6129251 ~ 6157940 (+)
G218971 NA other downstream 190239 6717628 ~ 6719163 (+)
LOC110507732 LOC106576036 other downstream 267171 6794547 ~ 6811294 (+)
LOC110520781 osgin2 other downstream 411211 6937600 ~ 6947976 (+)

Expression


Co-expression Network