LOC110507876 (rpp38)


Basic Information

Item Value
gene id LOC110507876
gene name rpp38
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6622171 ~ 6623967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967161.1
TAGTTGTGCGCACTGACCTACAACTGCTTTTTTAATTGTTATAATTGAGGTAAAAACCCGACGACTGTGGGTATATAAGTAACTATGGCAGTTTGTCAGCTCGATATGTTTAATTTAGGTAAAGATGGCCACTCCAGGCAAAGTGTCGAAAAAGGAGCGGAAGAAGCAGATCCCAGCTAAGACGTCCCTGAACTCCCCCTACAGACTGCAATGGAGCCCACTGCAGAGTGATGATGTACACTTCATCCTGGACACTCTGAAGAGCAAACTGTCAGCAACTGGCCTGGAAAAGAAAGAGGTGAAAGGGTTTCGACAGTGGGGGAAAAAGAGAAATAAGAACCCACCTACAGGACATGACTCGGTAGCTGAGCCCCCACAGATAACCCTCGACACTGTAACACCGGAATGTCCTGTTAAACCCAGAGAGCAAGGCTGGACTGACGTAGCCGCTAGGAGGCAGCTGGCCATCGGCATCAATGAGGTCACCAAGGCTCTGGAGAAGAACCAGCTCCGGCTGGTGCTCGTGTGCAAGTCGGTCAAACCGCCGCACATGACGAGCCACCTGATAGCTCTGTGCCGGACGCGGGGCGTGGCGGCATGCCAGGTGCCGCGTCTCAGTGAGAGTGTGGCGGGACTGCTGGGGCTGAAGTGCGTCCTGGCACTGGGATTCAGACAAGGGGACAGGAACGAGGATCCGACGTTCTCTGACACTGTGGAAGCAATTGTACCCAGAGTGCCTGCTCTGCAGGTTGCCTGGATACCAAGCCCTACCAGTGAAACAGGTGCAACAGTTGAGGGgcaggtaggagagggagagggaaaagctGCAGGCCAAAAACGGAAAATTGAAGACATTTCTCCAGACATTACAGAATGTCCATCCTGCGTACTTCAGCCTCTTAAAGTGAAAAGGATTATCCCGAACCCCTATAAAATACGGAAACCAAAGACCAAGAAAAAGTAGAAGAAATTTATGTACAAAAGATTACATGAAACGGTAGTGTAGGCagccctggatgctgattggaggTGATCTCTACTACCAATCTGGAGGAAACACTCCCAAAATTCCATGGAGGACTTAAATGAAATATTAGACAGCACACTCAGATATATCTTTTAAAGTCTAGATGAGTTTATTCCATCATGCTGGTATAGCTTGAGTGAGTATTTGAATGAGGTCCTGTCTAAACACGGCTGGTTCTAATTCCTCATTTCTTTTACAGCCTGCCAAGGAGTTCAATAAAATACTGTTTTTCAGTTA
>XM_021588265.2
GTCATCAACCGCAGACATACAATATGGCTGCGCCCATGGACACAGCACATTAGTTGTGCGCACTGACCTACAACTGCTTTTTTAATTGTTATAATTGAGGTAAAGATGGCCACTCCAGGCAAAGTGTCGAAAAAGGAGCGGAAGAAGCAGATCCCAGCTAAGACGTCCCTGAACTCCCCCTACAGACTGCAATGGAGCCCACTGCAGAGTGATGATGTACACTTCATCCTGGACACTCTGAAGAGCAAACTGTCAGCAACTGGCCTGGAAAAGAAAGAGGTGAAAGGGTTTCGACAGTGGGGGAAAAAGAGAAATAAGAACCCACCTACAGGACATGACTCGGTAGCTGAGCCCCCACAGATAACCCTCGACACTGTAACACCGGAATGTCCTGTTAAACCCAGAGAGCAAGGCTGGACTGACGTAGCCGCTAGGAGGCAGCTGGCCATCGGCATCAATGAGGTCACCAAGGCTCTGGAGAAGAACCAGCTCCGGCTGGTGCTCGTGTGCAAGTCGGTCAAACCGCCGCACATGACGAGCCACCTGATAGCTCTGTGCCGGACGCGGGGCGTGGCGGCATGCCAGGTGCCGCGTCTCAGTGAGAGTGTGGCGGGACTGCTGGGGCTGAAGTGCGTCCTGGCACTGGGATTCAGACAAGGGGACAGGAACGAGGATCCGACGTTCTCTGACACTGTGGAAGCAATTGTACCCAGAGTGCCTGCTCTGCAGGTTGCCTGGATACCAAGCCCTACCAGTGAAACAGGTGCAACAGTTGAGGGgcaggtaggagagggagagggaaaagctGCAGGCCAAAAACGGAAAATTGAAGACATTTCTCCAGACATTACAGAATGTCCATCCTGCGTACTTCAGCCTCTTAAAGTGAAAAGGATTATCCCGAACCCCTATAAAATACGGAAACCAAAGACCAAGAAAAAGTAGAAGAAATTTATGTACAAAAGATTACATGAAACGGTAGTGTAGGCagccctggatgctgattggaggTGATCTCTACTACCAATCTGGAGGAAACACTCCCAAAATTCCATGGAGGACTTAAATGAAATATTAGACAGCACACTCAGATATATCTTTTAAAGTCTAGATGAGTTTATTCCATCATGCTGGTATAGCTTGAGTGAGTATTTGAATGAGGTCCTGTCTAAACACGGCTGGTTCTAATTCCTCATTTCTTTTACAGCCTGCCAAGGAGTTCAATAAAATACTGTTTTTCAGTTA

Function

symbol description
rpp38 Predicted to enable ribonuclease P RNA binding activity. Predicted to contribute to ribonuclease P activity. Predicted to be involved in tRNA 5'-leader removal. Predicted to be part of multimeric ribonuclease P complex. Predicted to be active in fibrillar center. Orthologous to human RPP38 (ribonuclease P/MRP subunit p38).

NR:

description
ribonuclease P protein subunit p38-like

GO: NA

KEGG:

id description
K14523 RPP38; ribonucleases P/MRP protein subunit RPP38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967161.1 False 1264 mRNA 0.48 2 6622171 6623917
XM_021588265.2 True 1245 mRNA 0.49 2 6622171 6623967

Neighbor

gene id symbol gene type direction distance location
LOC110508127 NA coding downstream 71773 6527175 ~ 6550398 (-)
cf191 cf191 coding downstream 122591 6496695 ~ 6499580 (-)
LOC110507902 LOC106593870 coding downstream 130442 6479543 ~ 6491729 (-)
epb41l4b LOC106605949 coding downstream 142763 6454833 ~ 6479408 (-)
LOC110508108 NA coding downstream 152037 6468351 ~ 6470134 (-)
LOC110507843 LOC106576069 coding upstream 32546 6656513 ~ 6656888 (-)
LOC110507788 LOC106574611 coding upstream 90276 6714243 ~ 6744673 (-)
LOC110507764 LOC106576048 coding upstream 152514 6776481 ~ 6794278 (-)
LOC118945258 NA coding upstream 242058 6862876 ~ 6869053 (-)
LOC110508277 cld12 coding upstream 277511 6901478 ~ 6905286 (-)
G219970 fam171a1 non-coding downstream 15163 6603182 ~ 6607008 (-)
G219822 NA non-coding downstream 215103 6344657 ~ 6407068 (-)
G219847 NA non-coding downstream 235962 6385989 ~ 6386209 (-)
G219819 NA non-coding downstream 290177 6327177 ~ 6331994 (-)
G219988 LOC100136012 non-coding upstream 14973 6638940 ~ 6642155 (-)
G219999 NA non-coding upstream 35778 6659745 ~ 6660111 (-)
G219933 NA non-coding upstream 88213 6712180 ~ 6783455 (-)
G219952 NA non-coding upstream 149395 6773362 ~ 6774340 (-)
G220056 NA non-coding upstream 191719 6815686 ~ 6815896 (-)
LOC110534138 LOC106605946 other downstream 280558 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 283358 6332968 ~ 6338813 (-)
G219592 NA other downstream 870077 5751724 ~ 5752094 (-)
G219591 NA other downstream 873457 5748158 ~ 5748714 (-)
LOC110508304 gtpbp10 other upstream 306024 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 324831 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 328592 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 343114 6967081 ~ 6970500 (-)
LOC110508339 NA other upstream 365015 6988898 ~ 6993845 (-)

Expression


Co-expression Network