LOC118936368


Basic Information

Item Value
gene id LOC118936368
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6632114 ~ 6635038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471192.2
AGACGGTATGGAAATTCCATTCCTCCATTATCTCTGTTGTAGCTTGCTGGTATGCAATGAAATGGCGCTTCCTACTGAAGTTTAGTTAGCTAGCTTTAagccatagaaaatatttgggcTATGTTATATCAATTGACATGTGTTTTCTACTTCTTTATTATGTATGTAAGGGTTTTAAAACCGACACTGTTGATTGGCCAGACAGCAACGGTACCACTGAAGAACGTTAGCAAGTGAGTGAAGTGTCAGTGGGCCTGCCGCGTGAATACAAAGACGTAGACAACAGTTGTTCCCTGAGGATGGAGAGGAACGGGTCTGTGAAGCAGGAGACTATAAGTGTTGCCTCCTACAGTTAGGAAGAGAAGAAGCTGTTGGCTGCCATGGTGTCTGAGAAGGGGGAACTGGAGCTGACTGGCTCTCTGGTGATGGAGGTGACTGAGGTTCTACAGTAAAGTGATGCAGACACTGCACCCAACAGGGAGGAAAGGGCTCTGTAcctagaggaggagaaaggagatgagagacagacagatgaaggGACTGCCcagcagagaggagcagcagGCTAATGCTGAGTGTGAACCCTCAGTGGAGCCTGAGGTATATTTAGATTCTGTGAGCGACGGCGTGCGAGATACGGAGCGAGCGAGCCATCCTACACTCCACGCCGACACAAGAAGCTGTGTGTGTGATGGCCAGCCTGAGGAGCCTGTTGGGTTTGACAAACTCTGCATGCGGTTCCACGACCTCAACAGTTATGAGGAGCACGTCCCTCGAGAGCACTCCAAACGCTCACGGCCTCTCTGTCCAGACTGTGGCATCCTCATCTCAACGTTACTCAGTGTGGAGCACCAGTGTGAACAAGTTCAAGCTGTTCTGTCTGTGGGAAGCGCTGCGTGGATGAAGCTGGCCTCAAGCATCACCAGAGGCTTCACCATCAAGAGCATGTCTACTCCTGTAAGTTCTGCCTCAAGCACTTCAAGGCCAGGGAAGACAAGCGGACCCACGAGAAGGACAACCACCGGGTCAAATGCCCCTGGGGATTTTACAACATCTTGAAACGGAACCGCCATCTCAGAGAGCATGAGTCCAAGACATTTGTAACACGTGCTACAAGGAATTCCCCCAACTTAGCAAGCTTGAGAGGTACGAGCTGAGCCACAGTGACAACAAATCTTTCAGGTGTCAGGTGTGCCAGCGTTCTTTGCCCAGGCCAGCCAGCTGAAGTCCCACCTGCGCGTCCACACTGGGGAGAGGCCCTTCAAATGCCAGCGCTGCGTCAAGAGCTTTAACCACAATGTCAGCCTCAAGAACCTCTTCACACGCTATCAccaaggggagggagggagggagggaggtgcgAGAGCGGAGGAGCAGGCGACAGTGGAATTATGAACCTGAGGAGGAGGAGCGTCAGAATGAGAGTGATTCTGACTTTgacctggaggaagaggagaagacagggagtAAAGGGAAAGGTAGTGGAGGAGGGGGGCACTGGTAGAAGCCTCTAGGAGAGATACATGTGGACACTGCTGTTGAAAAGCTGGATACATTATCATCACCACCCCAGagagaaccagaccagaaccaggaGGCACCTGACGGTGTTATTAAAAAAAGTCTTATCGGTTTTGTCATGACCATAATGTTTTGGCTTTGAACATTACTTAGAACTCTTGAGGCTGTTGTTTTTTCACTTCTACAgttttggtttaaaaaaaaaaagatatatatatatatatatatattgttaatgAAAATGTGTTTCACTGTTCTACATCATCAAATGTCAAGGAAAAATCTGATAGGTTTGTGAAGTGAATATGTTACAAAGAATTTCCTACCCACAGATGTTATTGACTGATATATTGCATTTTGAATTCTCCTGGCTGGACCGGCCCACTAGTTAAGAAGCACAGAGATAAACTCATCTTGGATATAACCAGCGAGGAAGCAAGAGGCTTGATTCTGCTCTAAAGTATGTCAGTACAAAAATAGTGTTAACCAGTGGGAGTGGGGATTTTCTTTTAGGGAGGTCAATGAGATAATGTTGAATTTGGTcaacagttaaataaaggttacataaaaataaacataaaattGAATTTTTAA

Function

NR:

description
PREDICTED: zinc finger and SCAN domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471192.2 True 2115 mRNA 0.47 3 6632114 6635038

Neighbor

gene id symbol gene type direction distance location
LOC110507851 acbd7 coding upstream 513 6624575 ~ 6631601 (+)
nmt2 LOC106576081 coding upstream 11156 6611099 ~ 6620958 (+)
LOC110520771 fam171a1 coding upstream 25105 6560989 ~ 6607009 (+)
LOC110508080 LOC106606035 coding upstream 104725 6513292 ~ 6527389 (+)
LOC110507908 LOC106605953 coding upstream 121772 6499545 ~ 6510342 (+)
LOC110507805 LOC106606004 coding downstream 7465 6642503 ~ 6654110 (+)
LOC110507826 LOC106576069 coding downstream 24686 6659724 ~ 6712667 (+)
LOC110507743 LOC106605986 coding downstream 119801 6754839 ~ 6773064 (+)
LOC110507774 LOC106605985 coding downstream 139939 6773881 ~ 6777798 (+)
LOC110507732 LOC106576036 coding downstream 159509 6794547 ~ 6811294 (+)
G218892 NA non-coding upstream 22630 6556777 ~ 6609484 (+)
G218929 NA non-coding upstream 32967 6598227 ~ 6599147 (+)
G218862 NA non-coding upstream 86143 6516868 ~ 6545971 (+)
G218842 LOC106605951 non-coding upstream 176912 6450338 ~ 6455202 (+)
G218966 NA non-coding downstream 65810 6700848 ~ 6701347 (+)
G218986 NA non-coding downstream 99982 6735020 ~ 6735498 (+)
G219017 NA non-coding downstream 162836 6797874 ~ 6801798 (+)
LOC110534143 tmem67 other upstream 369757 6259904 ~ 6277154 (+)
LOC110535707 LOC106574428 other upstream 378523 6248078 ~ 6254241 (+)
G218971 NA other downstream 82590 6717628 ~ 6719163 (+)
LOC110520781 osgin2 other downstream 303562 6937600 ~ 6947976 (+)
LOC110508323 LOC106575347 other downstream 344093 6979131 ~ 6988449 (+)
LOC110536044 LOC106575458 other downstream 713254 7348131 ~ 7357408 (+)

Expression


Co-expression Network