LOC110507805 (LOC106606004)


Basic Information

Item Value
gene id LOC110507805
gene name LOC106606004
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6642503 ~ 6654110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588084.2
ATTTCCGTGGTGGAAACAATGGTGGAATGCAGAGATTTGTAAGGAAAGCCAACCTTACACCCGTCCCTAATACATTCgatttagttttaaatagtatCTATATTCCGCCCAATCATGGCCAATAATAATATAATCTTTACACCCTTTTTACCACTGAAGAAGAAACCCGATCGAGATTCTGAGTGGAGAAAATTAAAGGACAAATCCAGAAATCGGATTAATATCGGAGAAGCTTTTACCAGATGGAGGAACCTCAAGGAGGGGAAATCTATGCCTACAGATGCCGAagtggctttgtttttgcttgACAGGTTAGCTGCCCCCCTTCCACAACCTgctgccccccctccctccccagaagATATAATCGTGAACATCGACTGCCTGCTGCAGCTGTTTCAGCGGTGTGAGCAGTGCAGGCGTGAGAGTGTGATCCAGACGCAGGGAGACAGGACATGCCTCTCTGTGACCCAACACTGCCAGAGCTGCAACCACCGCAGGACATGGGCAAGCAACGCATCTACTGTCCAGACAATGCTCAAAGGAAATGGGGACGAGCCACAGAATATTCAGGTTGATATGCAGGTGGCCCTGCCATCTGAGGACACAGATGGAGCCTCGCCGTCTGAGAACCGAGATGGGGACTTGCCATCGGAGGACAGAGATGAGGCTCTGGATCTGACTGGCTCTTTGGAGATGGAGGTGACTGTAGACCAGCCACCAAGACCAGGAGGAAGTGGCATGTCCCTGGTGAGGGGGAAAAATGAGGGGAAcaaaggaacagaggagagaaagaaagtgacTAAGGTGGTGTTGGACAGTGAGATGGACTGTGCACGAAGCCAGGAGGACAATGGCCTGTCCTCACAGGAggatgaggaaggagaggagagaaagggaaagttCCTAGGTGGTGAACAACAGGAGAATGGTGCTGAGCAGCGGGCCTCTATTGAGGTGACAATATACTCTATAGAGCCTGAGGACTCTGAAAGCCCAACCTCTcagatagacagaggagagaagacgGAGGTCGCTGCAGATGGGTGTGAGGGGGAGGGTGATGTGTGTGAGATGGAGGGTGAAGAGACAGATGaggaagatagacagacagagagtggctCTGAATTTGACCCAGAAACTGAggaagagagactgggagagagtgACTCTGAATTTGACCCAGAAGAGGAGAAACCAACGAgtagtagagggagagggagagggagaggcaggggaaggggaaggggaagggggaaagggagatGCAGAGGAAGGCAATTGCAGCAgcctacaggagggactggtttgGATGAGTCTGCTGAAGACTCTGATGGATCACCTTCATCATCACCCCAGAGAGACCAGCAGGACCAGGAGTCGTTCAGCGGTGCTGCTGGAGAACTGGGCTCCGGGGACCTTGTCAGCATCCGGCAGAAATTCAAATACTCTAAAAAACACCACATGGTCCTCTGTCCTGAATGTGGCGTCCTGTACACCACCAGGCTGAAACACCATAAGTGTGAACACAAGTTCATGGTCCGCTGTCCAGACTGTGGGCAGGGTTGTGCGAGTGAACTGGGCCTCAAGCAGCACCGGAGGCTACACCGTCAGGACCTTAAGTTTCCCTGTAAGTTCTGCCTCCAATCCTTCAGGACACGGCCAGACAAGCTGACCCACGAGAAGACCCACAGATTCAAAAGATTAAAAGGTCACAGATGCTACAGCTGCTCAGAGTGCCCACTGAGCTTTGACAACATCCTCATACGGAATCGCCATCTCAGAGAGCACGAGTCCAAGAGACACATCTGTCACACATGTTACAAGGAATTCAACAAGGGTCACCTCCTGGAGAGGCACGCACTGTCCCACAGTGACGACAAGCCCTTCAAGTGCCAGGTGTGCCAGCGTGCCTTTGCCCAGCTCAGCCAGCTGAAGTCCCACCTGCGCGTCCACACTGGGGAGAGGCCCTTCCAATGCCAGCGCTGCGACAAGAGCTTCAACCACAACGTCAGCCTCAAGAACCACGTCAGACGCTACCACAGCCCAGACTCAGGGCTGGACCCTGATGGAGGCACAGAAGTTGGGGGACAGGGGGGGAGCAGGGAAACAGATGGCAGGACTgggcaggagggaggggaggtgaaaTCGAGGAAGCCTCGGCAGCAGGTAGAGCTTACCTTTATGACTGAGTGGGAGATGTGGGCAGGAGGACAGGGAGcaaagagagtggaggagaaacCGAGGAAGAGGAAACGCCAGTGCAATGATGatcctgaagaggaggaggaggagaggcagcgagagagtgACTCTGACTTTGACCCAGTGGCGGAGAAGAAGATGGGGAGTAGTAAAGGGAGGGggccagggagaggaggggggagaggaagtgGAGGGAGTCACTAGCAGAGGCCTACAGGAGAGACTTCTGCAGGCACTGTTGTTGGAGAGatggggggacagagagacaaaggctgtattcattagtgcacactgtaccaaaacattttgtaACCGAAAATGAAAACAAGCGtttgttattggacaagttcaggtactGCCTCGCCGTTTTGGCCCGTTTGCTTCTGATTTGTTCTTAGTGAATATGACTTTTAAAAAatggaacctttatttaactaggcaagtcagtcaagaacaaattcttatttacaatgacggcttaccccagccaaaccctaacgacactgtgggactcccaatcatggccggttgtgatacagcctggaatcgaaccagggtctgtagtgacacctctagcactgagatgcagtgccttagaccgctgcttcACTCGGGAGTCCCAAGACTAAGAGCAGGAAACATCTCCTGGCACTAGAATTTGTTATCCTCATGTTCTGTCTTTGAATTTAGAACATTTTTGGATTCCCAGAACCtgattgaagaatctaaaatatatttagatttgttaaactattcttttggttactacatgattccatatgtgttatttaatagttttgatgtctacactattctacaatgtagaaaatagtgcaaataaagaaaaacccttgaattagtagttGTGTCCCAACTTTTGAGTGGTAGTGTACAGTATCAgccagaagtttggacacacctacacagttATGGTTCAACACATTGCACATGAAATGTGTAACGTTGCCCTAAACTGCCGTTTCTGTACTCTATATGGTGTCATGATCACCACTGATCACACCTAGTTTGTGTGATGTTTCATATACGCTAATGGCAGGTAATGCACCAGGATCTAGTTTTGAATGCACCAGTATCAGATTTTTCAACCCAGGTACTAGCAACATATGGGCCTCGGAAATACTGCACCCCAGCTTAACACTTTGATCATTATTAAATATCATATTCCATTAATGTAaagctaaaaatatatataagagAAGTCTCAGTCGGAGTTAGATAACCATGGAAGAATGAATAAGCAAAGTCGTGTGAAGTGTAAGAAGATCACCATTTAACACATTCACAGTGTCTTTTCCGGGCCTTGGCAGTCAGATTACTGGGGAAATGTCATGAGCAGTGCTACATACACCATGataggctgaccacaccgctcgcgagcgttgcaaaatacatttagaaatctctGTTATagaattattgcacccacactgctcgcagtcgtcaacgagcatctgcgttgccaagggctaaaatagaagtcattcctatttctgacgcagatcgcgctgcaagtcctgcctctcccatctcctcattggtttatagaagcaggtacgcACGTGCCATcttctcattggttatacccacgtaggtgattgaaagacgaactgttgccggttgtcgtggtaatactatgaaagtttagatgccaatcaccatgtAAGTTAAACgatgaaaaggcctggaaggaggagagatgactagaaacgattcggttgaccattTTTATGTGtagattaattgtcggagtagaggacctagtgcatttcaggtaaaagaacaacctaatgtttatatcccaggacaaattagctagcaactacaagctagctaaataggacaaattagctaataAGTgcaagctaaattgccataaatgttaaatgcttttcgacctgtccccaaattaatgtcataaattcagagtttgttttgatattttaaactGTGTGTCGTGATCGCTTTTGTTgcagggggacaaaataaatgtatgcacgatggcgcacgtgaAATACTAAGGTGAGTTTGCGGGATTAAGCCGCGCTTCGATTGGACTGCAAACTGAATCTGATTTATAGTGCCTTAAGAAAATATTtgtaccccttgatttattccacattttgttgttgcagactgaattcacccatctacacactaccccctaatgacaaagtgaaaatgtttAATAaaccatttacataag
>XM_021588102.2
ATTTCCGTGGTGGAAACAATGGTGGAATGCAGAGATTTGTAAGGAAAGCCAACCTTACACCCGTCCCTAATACATTCgatttagttttaaatagtatCTATATTCCGCCCAATCATGGCCAATAATAATATAATCTTTACACCCTTTTTACCACTGAAGAAGAAACCCGATCGAGATTCTGAGTGGAGAAAATTAAAGGACAAATCCAGAAATCGGATTAATATCGGAGAAGCTTTTACCAGATGGAGGAACCTCAAGGAGGGGAAATCTATGCCTACAGATGCCGAagtggctttgtttttgcttgACAGGTTAGCTGCCCCCCTTCCACAACCTgctgccccccctccctccccagaagATATAATCGTGAACATCGACTGCCTGCTGCAGCTGTTTCAGCGGTGTGAGCAGTGCAGGCGTGAGAGTGTGATCCAGACGCAGGGAGACAGGACATGCCTCTCTGTGACCCAACACTGCCAGAGCTGCAACCACCGCAGGACATGGGCAAGCAACGCATCTACTGTCCAGACAATGCTCAAAGGAAATGGGGACGAGCCACAGAATATTCAGTAGGTTGATATGCAGGTGGCCCTGCCATCTGAGGACACAGATGGAGCCTCGCCGTCTGAGAACCGAGATGGGGACTTGCCATCGGAGGACAGAGATGAGGCTCTGGATCTGACTGGCTCTTTGGAGATGGAGGTGACTGTAGACCAGCCACCAAGACCAGGAGGAAGTGGCATGTCCCTGGTGAGGGGGAAAAATGAGGGGAAcaaaggaacagaggagagaaagaaagtgacTAAGGTGGTGTTGGACAGTGAGATGGACTGTGCACGAAGCCAGGAGGACAATGGCCTGTCCTCACAGGAggatgaggaaggagaggagagaaagggaaagttCCTAGGTGGTGAACAACAGGAGAATGGTGCTGAGCAGCGGGCCTCTATTGAGGTGACAATATACTCTATAGAGCCTGAGGACTCTGAAAGCCCAACCTCTcagatagacagaggagagaagacgGAGGTCGCTGCAGATGGGTGTGAGGGGGAGGGTGATGTGTGTGAGATGGAGGGTGAAGAGACAGATGaggaagatagacagacagagagtggctCTGAATTTGACCCAGAAACTGAggaagagagactgggagagagtgACTCTGAATTTGACCCAGAAGAGGAGAAACCAACGAgtagtagagggagagggagagggagaggcaggggaaggggaaggggaagggggaaagggagatGCAGAGGAAGGCAATTGCAGCAgcctacaggagggactggtttgGATGAGTCTGCTGAAGACTCTGATGGATCACCTTCATCATCACCCCAGAGAGACCAGCAGGACCAGGAGTCGTTCAGCGGTGCTGCTGGAGAACTGGGCTCCGGGGACCTTGTCAGCATCCGGCAGAAATTCAAATACTCTAAAAAACACCACATGGTCCTCTGTCCTGAATGTGGCGTCCTGTACACCACCAGGCTGAAACACCATAAGTGTGAACACAAGTTCATGGTCCGCTGTCCAGACTGTGGGCAGGGTTGTGCGAGTGAACTGGGCCTCAAGCAGCACCGGAGGCTACACCGTCAGGACCTTAAGTTTCCCTGTAAGTTCTGCCTCCAATCCTTCAGGACACGGCCAGACAAGCTGACCCACGAGAAGACCCACAGATTCAAAAGATTAAAAGGTCACAGATGCTACAGCTGCTCAGAGTGCCCACTGAGCTTTGACAACATCCTCATACGGAATCGCCATCTCAGAGAGCACGAGTCCAAGAGACACATCTGTCACACATGTTACAAGGAATTCAACAAGGGTCACCTCCTGGAGAGGCACGCACTGTCCCACAGTGACGACAAGCCCTTCAAGTGCCAGGTGTGCCAGCGTGCCTTTGCCCAGCTCAGCCAGCTGAAGTCCCACCTGCGCGTCCACACTGGGGAGAGGCCCTTCCAATGCCAGCGCTGCGACAAGAGCTTCAACCACAACGTCAGCCTCAAGAACCACGTCAGACGCTACCACAGCCCAGACTCAGGGCTGGACCCTGATGGAGGCACAGAAGTTGGGGGACAGGGGGGGAGCAGGGAAACAGATGGCAGGACTgggcaggagggaggggaggtgaaaTCGAGGAAGCCTCGGCAGCAGGTAGAGCTTACCTTTATGACTGAGTGGGAGATGTGGGCAGGAGGACAGGGAGcaaagagagtggaggagaaacCGAGGAAGAGGAAACGCCAGTGCAATGATGatcctgaagaggaggaggaggagaggcagcgagagagtgACTCTGACTTTGACCCAGTGGCGGAGAAGAAGATGGGGAGTAGTAAAGGGAGGGggccagggagaggaggggggagaggaagtgGAGGGAGTCACTAGCAGAGGCCTACAGGAGAGACTTCTGCAGGCACTGTTGTTGGAGAGatggggggacagagagacaaaggctgtattcattagtgcacactgtaccaaaacattttgtaACCGAAAATGAAAACAAGCGtttgttattggacaagttcaggtactGCCTCGCCGTTTTGGCCCGTTTGCTTCTGATTTGTTCTTAGTGAATATGACTTTTAAAAAatggaacctttatttaactaggcaagtcagtcaagaacaaattcttatttacaatgacggcttaccccagccaaaccctaacgacactgtgggactcccaatcatggccggttgtgatacagcctggaatcgaaccagggtctgtagtgacacctctagcactgagatgcagtgccttagaccgctgcttcACTCGGGAGTCCCAAGACTAAGAGCAGGAAACATCTCCTGGCACTAGAATTTGTTATCCTCATGTTCTGTCTTTGAATTTAGAACATTTTTGGATTCCCAGAACCtgattgaagaatctaaaatatatttagatttgttaaactattcttttggttactacatgattccatatgtgttatttaatagttttgatgtctacactattctacaatgtagaaaatagtgcaaataaagaaaaacccttgaattagtagttGTGTCCCAACTTTTGAGTGGTAGTGTACAGTATCAgccagaagtttggacacacctacacagttATGGTTCAACACATTGCACATGAAATGTGTAACGTTGCCCTAAACTGCCGTTTCTGTACTCTATATGGTGTCATGATCACCACTGATCACACCTAGTTTGTGTGATGTTTCATATACGCTAATGGCAGGTAATGCACCAGGATCTAGTTTTGAATGCACCAGTATCAGATTTTTCAACCCAGGTACTAGCAACATATGGGCCTCGGAAATACTGCACCCCAGCTTAACACTTTGATCATTATTAAATATCATATTCCATTAATGTAaagctaaaaatatatataagagAAGTCTCAGTCGGAGTTAGATAACCATGGAAGAATGAATAAGCAAAGTCGTGTGAAGTGTAAGAAGATCACCATTTAACACATTCACAGTGTCTTTTCCGGGCCTTGGCAGTCAGATTACTGGGGAAATGTCATGAGCAGTGCTACATACACCATGataggctgaccacaccgctcgcgagcgttgcaaaatacatttagaaatctctGTTATagaattattgcacccacactgctcgcagtcgtcaacgagcatctgcgttgccaagggctaaaatagaagtcattcctatttctgacgcagatcgcgctgcaagtcctgcctctcccatctcctcattggtttatagaagcaggtacgcACGTGCCATcttctcattggttatacccacgtaggtgattgaaagacgaactgttgccggttgtcgtggtaatactatgaaagtttagatgccaatcaccatgtAAGTTAAACgatgaaaaggcctggaaggaggagagatgactagaaacgattcggttgaccattTTTATGTGtagattaattgtcggagtagaggacctagtgcatttcaggtaaaagaacaacctaatgtttatatcccaggacaaattagctagcaactacaagctagctaaataggacaaattagctaataAGTgcaagctaaattgccataaatgttaaatgcttttcgacctgtccccaaattaatgtcataaattcagagtttgttttgatattttaaactGTGTGTCGTGATCGCTTTTGTTgcagggggacaaaataaatgtatgcacgatggcgcacgtgaAATACTAAGGTGAGTTTGCGGGATTAAGCCGCGCTTCGATTGGACTGCAAACTGAATCTGATTTATAGTGCCTTAAGAAAATATTtgtaccccttgatttattccacattttgttgttgcagactgaattcacccatctacacactaccccctaatgacaaagtgaaaatgtttAATAaaccatttacataag

Function

NR:

description
zinc finger and BTB domain-containing protein 17-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588084.2 False 4429 mRNA 0.47 4 6642503 6654110
XM_021588102.2 True 4432 mRNA 0.47 4 6642503 6654110

Neighbor

gene id symbol gene type direction distance location
LOC118936368 NA coding upstream 7465 6632114 ~ 6635038 (+)
LOC110507851 acbd7 coding upstream 10902 6624575 ~ 6631601 (+)
nmt2 LOC106576081 coding upstream 21545 6611099 ~ 6620958 (+)
LOC110520771 fam171a1 coding upstream 35494 6560989 ~ 6607009 (+)
LOC110508080 LOC106606035 coding upstream 115114 6513292 ~ 6527389 (+)
LOC110507826 LOC106576069 coding downstream 5614 6659724 ~ 6712667 (+)
LOC110507743 LOC106605986 coding downstream 100729 6754839 ~ 6773064 (+)
LOC110507774 LOC106605985 coding downstream 120867 6773881 ~ 6777798 (+)
LOC110507732 LOC106576036 coding downstream 140437 6794547 ~ 6811294 (+)
LOC110508266 LOC106511201 coding downstream 174573 6828683 ~ 6929400 (+)
G218892 NA non-coding upstream 33019 6556777 ~ 6609484 (+)
G218929 NA non-coding upstream 43356 6598227 ~ 6599147 (+)
G218862 NA non-coding upstream 96532 6516868 ~ 6545971 (+)
LOC110507908 LOC106605953 non-coding upstream 132452 6499545 ~ 6510342 (+)
G218842 LOC106605951 non-coding upstream 187301 6450338 ~ 6455202 (+)
G218966 NA non-coding downstream 46738 6700848 ~ 6701347 (+)
G218986 NA non-coding downstream 80910 6735020 ~ 6735498 (+)
G219017 NA non-coding downstream 143764 6797874 ~ 6801798 (+)
LOC110534143 tmem67 other upstream 380146 6259904 ~ 6277154 (+)
LOC110535707 LOC106574428 other upstream 388912 6248078 ~ 6254241 (+)
G218971 NA other downstream 63518 6717628 ~ 6719163 (+)
LOC110520781 osgin2 other downstream 284490 6937600 ~ 6947976 (+)
LOC110508323 LOC106575347 other downstream 325021 6979131 ~ 6988449 (+)
LOC110536044 LOC106575458 other downstream 694182 7348131 ~ 7357408 (+)

Expression


Co-expression Network