LOC110507774 (LOC106605985)


Basic Information

Item Value
gene id LOC110507774
gene name LOC106605985
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6773881 ~ 6777798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588006.2
AAAATCAGATTCAGGAGGACTTCGAGAAACTTCACCAGTTTCTACGATATGAAGAGGCAGCCAGGATGGCTGtcctgagggaggaagaggaggatgaagatgatTGACGATGAACAGAGCGATAGCAGCCATTTTAGACACAACGAGAGCCATAAAGAAGGACCTGGTATCTGATGACATCTCATTCCTGCAGAACTACAAGGACATGTTAAAAAGAGCCCAGTGCACAAGCCCAGATCCAGAGCTTGTTTCTGGAGCGCTGATCAATATGGCAAAACACCTGGGCAACCTGCAGGTCAGAGTTTTGGAGAAGATGCTGAAGTCTGTTCAATACACGCCTGTGATTCTGGACCCCAACACTGCCCATCCATGTCTCACCCTGTCTGATGATCTGACCAGTATGAGATTCAGTGATGGGATACGGCTGCTTCCTGACAACCAGAGAGGTTTGATAACTATTGAATGGTCCTGGGCTCTGAGGGCTTTGACTCTGGGACACACAGTTGGGATACAGACGTCGGGGACAATACAGTATGGTTTGTAGGTGTAGTCTATAAGTCTGTCCAGAGGAAGGGAGTGGTACAGACTGGACTCTGGCGTGTAGGCTATTATAATGATAAATACTGGGCACGTTGTCCAAAAGGGCCACAGACTGTCCTGACACTGGAAAATAAACCCCATCGGATCAGAGTGCAGCTGGACTGGAACAGAGATACACTGTCCTTTTACGACCTTgataataacacacacatacacacgttcaCACACTTTTACAGAGAGATTGTTTCCATACATCAACATTGGCAGTAATCTCTACGCTGCTAGGATCTTACCAGGGAAAGCCTCTGTAACAGTGGAACAGCACATTATACCTCCCCATGCTAGCCCTTCTTCCTTTTAACTTGATCAGTTGTTGTGGTACGCTGACGCAACGGAAGGCACCACGACCTCCGTGATTTAGATTTGTTCAACAGGATTCAATTATGAATTGTATTATCATATGAATTATTATGTTAACAAACTACTGGATTGAACCAAATCACAAATCTTTGCTGATCTAATAAAAACAATTGATTCAACAA
>TU249612
ACACAGCAAGCTACTCACACTGTTCTGTCTGGAGCATGAAGAGCCGATCTGTTCGGTGTGTGAGGGTTCAAGTAAACAAACACATGACTGTATCCCAGTAGATGAGGCAGCTCTGGATCGCAAGAGCCAGGCCCAGAAGACAGAAAATCAGATTCAGGAGGACTTCGAGAAACTTCACCAGTTTCTACGATATGAAGAGGCAGCCAGGATGGCTGtcctgagggaggaagaggaggatgaagatgatTGACGATGAACAGAGCGATAGCAGCCATTTTAGACACAACGAGAGCCATAAAGAAGGACCTGGTATCTGATGACATCTCATTCCTGCAGAACTACAAGGACATGTTAAAAAGGTAAGGCCTGTTTGTCTGCAACACTTCAGGTGAAGGGTGAAGAATCTGGACCCTAAGTGATcggcctcttctctctcttccctgtggtTCTGAACCCAACCCCACCGTATCACTAACTCTGGGATATTCTTCTAGAGCCCAGTGCACAAGCCCAGATCCAGAGCTTGTTTCTGGAGCGCTGATCAATATGGCAAAACACCTGGGCAACCTGCAGGTCAGAGTTTTGGAGAAGATGCTGAAGTCTGTTCAATACACGCCTGTGATTCTGGACCCCAACACTGCCCATCCATGTCTCACCCTGTCTGATGATCTGACCAGTATGAGATTCAGTGATGGGATACGGCTGCTTCCTGACAACCAGAGAGGTTTGATAACTATTGAATGGTCCTGGGCTCTGAGGGCTTTGACTCTGGGACACACAGTTGGGATACAGACGTCGGGGACAATACAGTATGGTTTGTAGGTGTAGTCTATAAGTCTGTCCAGAGGAAGGGAGTGGTACAGACTGGACTCTGGCGTGTAGGCTATTATAATGATAAATACTGGGCACGTTGTCCAAAAGGGCCACAGACTGTCCTGACACTGGAAAATAAACCCCATCGGATCAGAGTGCAGCTGGACTGGAACAGAGATACACTGTCCTTTTACGACCTTgataataacacacacatacacacgttcaCACACTTTTACAGAGAGATTGTTTCCATACATCAACATTGGCAGTAATCTCTACGCTGCTAGGATCTTACCAGGGAAAGCCTCTGTAACAGTGGAACAGCACATTATACCTCCCCATGCTAGCCCTTCTTCCTTTTAACTTGATCAGTTGTTGTGGTACGCTGACGCAACGGAAGGCACCACGACCTCCGTGATTTAGATTTGTTCAACAGGATTCAATTATGAATTGTATTATCATATGAATTATTATGTTAACAAACTACTGGATTGAACCAAATCACAAATCTTTGCTGATCTAATAAAAACAATTGATTCAACAATTCAAATGTCAAAATGTGACTTTTATTCTCTATGTATTTCTGTACAAAGTTGGGAAATGTGTCACTACAGGTGATCATTGTAGAATATATTAAACAATAGAAATATATATCATTGCTACATGTTTTGAGAACATGCACAGGTTGTCACAGTTCACAGTCCATGTCTGGCTGACTGGGGATTGAATATGGGATTCTGGAACAGGTGCAAGTTAAGAGTTTCAGGTTTAAACTGGCAGTCTGGCACTGAACAGAACATGTATCCTGAAGGACCTTGGGCCTTCTCTTCCAATAGGGTTGAGAATGAGGTGATAGGGTCATGAATTGAGATCGAGAAAGCGGCAGGGAATGAGAGGGTTCTGCGGGACAGAAACTACTAACCAGAAGTTATCCCGCCTCATCCACAGCTTTGACCCTCATCTCTACTGTCCCCGACTCCACTCTGAGGGTGtcgggatatgcaaaaaacacatttcagacatgggTATGATACACACgtgtacatgtgtgaaacaggacaaatataagcatcCATCAAATGATTATTATTACTGTCAGACCCCGGATGGCACAGTACACACAACCCCCATACCTCAATAACTAACATAATGGGATAAAACACTTGTCCAATATGACCCCCCCAGTTTCTGGTTACAGATAAGTCTCTAACACCTACAGGCCAGTGTAATTAAATGCACTTCATAACATGATATTTCACCATGGGTGCACAGGAAAAAGATTATGCAAATAATTTTTAAGTAGTTGTGAAAATgatatttcaaatacaatctgtgcacttttactattttctcttGTCACAATTAGTATGGTGATTAAGAGCAGTATACCTTGATTGAGAAATAAGAAAATATGAATAATATTGATTACCTACAAATATTTGTCTTCAATATTGTTTTCATGTCTGCCAGTATTACCTGCTTTGGAACAGAATCAAGTCCTGGCGTTCTTGGGTCCTAAACGCCAACATTGGCTACTTCCAGCTAGTCACATGACAGATCACACTTTACAGTGAGGGGTGTTGGAGTGTCTAAGCAGCTGGGAGGACACAGGCATGCAAAGTTACATCTGAAAATCTCTAAGGACCCTGGGAAAGGTAGAAGTAGCCAATACCTACTGTTGGCGATGGCGGATTGTGTTCTTGGTATTGTCTATGgtggtggtttgtgtgtgtgtgagaggcccTAGTCAGGTCAGGTGGTGCTGGTCAGCAGCCTCTCCTGGTTGTGCTTGCGGAAGAAGGCTTTCCCAAACTCATAACAGCTGATCATAATGGCACAGGCTGGGGCCACCTTGATCACCC

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588006.2 False 1082 mRNA 0.45 4 6774977 6776480
TU249612 True 2678 lncRNA 0.48 4 6773881 6777798

Neighbor

gene id symbol gene type direction distance location
LOC110507743 LOC106605986 coding upstream 1913 6754839 ~ 6773064 (+)
LOC110507826 LOC106576069 coding upstream 62310 6659724 ~ 6712667 (+)
LOC110507805 LOC106606004 coding upstream 120867 6642503 ~ 6654110 (+)
LOC118936368 NA coding upstream 139939 6632114 ~ 6635038 (+)
LOC110507851 acbd7 coding upstream 143376 6624575 ~ 6631601 (+)
LOC110507732 LOC106576036 coding downstream 18067 6794547 ~ 6811294 (+)
LOC110508266 LOC106511201 coding downstream 52203 6828683 ~ 6929400 (+)
LOC110520781 osgin2 coding downstream 161120 6937600 ~ 6947976 (+)
LOC110508323 LOC106575347 coding downstream 203015 6979131 ~ 6988449 (+)
them4 LOC106592246 coding downstream 216587 6993067 ~ 6996424 (+)
G218986 NA non-coding upstream 39479 6735020 ~ 6735498 (+)
G218966 NA non-coding upstream 73630 6700848 ~ 6701347 (+)
G218892 NA non-coding upstream 165493 6556777 ~ 6609484 (+)
G218929 NA non-coding upstream 175830 6598227 ~ 6599147 (+)
G219017 NA non-coding downstream 21394 6797874 ~ 6801798 (+)
G219018 NA non-coding downstream 21888 6798368 ~ 6801932 (+)
G219026 NA non-coding downstream 39806 6816286 ~ 6816579 (+)
G219063 NA non-coding downstream 86459 6862939 ~ 6865651 (+)
G218971 NA other upstream 55814 6717628 ~ 6719163 (+)
LOC110520771 fam171a1 other upstream 167968 6560989 ~ 6607009 (+)
G218842 LOC106605951 other upstream 319775 6450338 ~ 6455202 (+)
LOC110534143 tmem67 other upstream 512620 6259904 ~ 6277154 (+)
LOC110536044 LOC106575458 other downstream 571812 7348131 ~ 7357408 (+)
G220435 NA other downstream 583188 7359668 ~ 7365285 (+)

Expression


Co-expression Network