LOC110507764 (LOC106576048)


Basic Information

Item Value
gene id LOC110507764
gene name LOC106576048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6776481 ~ 6794278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967179.1
GTAAACTAGCTATTCTTATTTCACTTTATCTAGTTGAATGAAGCCATGTATTGTGGAATTGCCCATGAAGCACATGTACGCAGATACGAGCTATAAGAATACCGGGACATCACAAATGGGTTTGCTTTGGATTCCGTTGCTGACAAAGAGCAATACTACTTGTCCACTGTGGAAGAGTTGCTAGCTAAATAAGTTAGCTAGCTTCTAGTTCCTGCAATATAGCTAGCAAAAAGCTTCTATAAGATGTTGGTTTCCTGCTCAGGGGCTCTCCTGACGTCATTGTTTGTCACACCTCTGGATGTTGTCAAGATAAGACTCCAGGCTCAGAAAAGTCCCTTTCCCAAAGGGAAATGCTTTGTGTACTGCAATGGCCTGATGGACCATACCTGTGTGTGTACGAACGGCAACTCCAAGGCCTGGTACAAGGCCCCCGGCCACTTCAACGGCACTCTGGATGCCTTTATTAAGATAGGCCGCAGGGAAGGTATCAAGTCGTTATGGAGCGGCCTCCCTCCAACCCTTATCATGGCGGTCCCGGCGACAGTGATCTACTTCACGTGTTACGACCAACTGCGTGCTGCCCTGAGGGTCAGGATGGGGTCACACGCTGAGGAGGCGCCTTTACTAGCAGGCGCCCTCGCCAGAGTGGGCTCTGTGACAGTGATCAGTCCGTTGGAGCTGATCCGTACTAAGATGCAGTCCCAGAGAAGTTTGTACAGGGAGCTGAGTGAGGTTATCCACTCTGCAGTACGCAACGAGGGCTGGCGGTCTCTCTGGAGGGGCTGGGGACCCACACTGCTTAGAGACGTGCCCTTCTCAGCCATGTACTGGTATAACTATGAGAAGGGGAAGGCGTGGCTGTGTAAGCACAACAATATCAGAGAGCCAACGTTTGCCATCACCTTCATATCCGGAGCGGTGTCTGGATCAATCGCTTCCATAGTAACTCTTCCCTTCGACGTTGTGAAGACCAGGAGGCAGGTGGAGATAGGGGAACTCCAGGCTATGAATTTGTCGTCCAAggcctcctcctccactctcagtGTGATGACCAAGATTGTGGCTGAGAACGGAGTGGGTGGACTGTTTGTAGGTTTCCTTCCCAGGGTGATCAAGGTGGCCCCAGCCTGTGCCATTATGATCAGCTGTTATGAGTTTGGGAAAGCCTTCTTCCGCAAGCACAACCAGGAGAGGCTGCTGACCAGCACCACCTGACCTGACTAgggcctctcacacacacacaaaccaccacCATAGACAATACCAAGAACACAATCCGCCATCGCCAACAGTAGGTATTGGCTACTTCTACCTTTCCCAGGGTCCTTAGAGATTTTCAGATGTAACTTTGCATGCCTGTGTCCTCCCAGCTGCTTAGACACTCCAACACCCCTCACTGTAAAGTGTGATCTGTCATGTGACTAGCTGGAAGTAGCCAATGTTGGCGTTTAGGACCCAAGAACGCCAGGACTTGATTCTGTTCCAAAGCAGGTAATACTGGCAGACATGAAAACAATATTGAAGACAAATATTTGTAGGTAATCAATATTATTCATATTTTCTTATTTCTCAATCAAGGTATACTGCTCTTAATCACCATACTAATTGTGACaagagaaaatagtaaaagtgcacagattgtatttgaaatatcATTTTCACAACTACTTAAAAATTATTTGCATAATCTTTTTCCTGTGCACCCATGGTGAAATATCATGTTATGAAGTGCATTTAATTACACTGGCCTGTAGGTGTTAGAGACTTATCTGTAACCAGAAACTGGGGGGGTCATATTGGACAAGTGTTTTATCCCATTATGTTAGTTATTGAGGTATGGGGGTTGTGTGTACTGTGCCATCCGGGGTCTGACAGTAATAATAATCATTTGATGgatgcttatatttgtcctgtttcacacatgtacacGTGTGTATCATAcccatgtctgaaatgtgttttttgcatatcccgaCACCCTCAGAGTGGAGTCGGGGACAGTAGAGATGAGGGTCAAAGCTGTGGATGAGGCGGGATAACTTCTGGTTAGTAGTTTCTGTCCCGCAGAACCCTCTCATTCCCTGCCGCTTTCTCGATCTCAATTCATGACCCTATCACCTCATTCTCAACCCTATTGGAAGAGAAGGCCCAAGGTCCTTCAGGATACATGTTCTGTTCAGTGCCAGACTGCCAGTTTAAACCTGAAACTCTTAACTTGCACCTGTTCCAGAATCCCATATTCAATCCCCAGTCAGCCAGACATGGACTGTGAACTGTGACAACCTGTGCATGTTCTCAAAACATGTAGCAATGATATATATTTCTATTGTTTAATATATTCTACAATGATCACCTGTAGTGACACATTTCCCAACTTTGTACAGAAATACATAGAGAATAAAAGTCACATTTTGACATTTGAA
>XM_036967177.1
GGGTAAACTAGCTATTCTTATTTCACTTTATCTAGTTGAATGAAGCCATGTATTGTGGAATTGCCCATGAAGCACATGTACGCAGATACGAGCTATAAGAATACCGGGACATCACAAATGGGTTTGCTTTGGATTCCGTTGCTGACAAAGAGCAATACTACTTGTCCACTGTGGAAGAGTTGCTAGCTAAATAAGTTAGCTAGCTTCTAGTTCCTGCAATATAGCTAGCAAAAAGCTTCTATAAGGCAAGATGAGTGGTAATTCTGGTAAAAATCCTGTGCCCGTCGACACCAATGGCATTACTCCATTTCAACAGATGTTGGTTTCCTGCTCAGGGGCTCTCCTGACGTCATTGTTTGTCACACCTCTGGATGTTGTCAAGATAAGACTCCAGGCTCAGAAAAGTCCCTTTCCCAAAGGGAAATGCTTTGTGTACTGCAATGGCCTGATGGACCATACCTGTGTGTGTACGAACGGCAACTCCAAGGCCTGGTACAAGGCCCCCGGCCACTTCAACGGCACTCTGGATGCCTTTATTAAGATAGGCCGCAGGGAAGGTATCAAGTCGTTATGGAGCGGCCTCCCTCCAACCCTTATCATGGCGGTCCCGGCGACAGTGATCTACTTCACGTGTTACGACCAACTGCGTGCTGCCCTGAGGGTCAGGATGGGGTCACACGCTGAGGAGGCGCCTTTACTAGCAGGCGCCCTCGCCAGAGTGGGCTCTGTGACAGTGATCAGTCCGTTGGAGCTGATCCGTACTAAGATGCAGTCCCAGAGAAGTTTGTACAGGGAGCTGAGTGAGGTTATCCACTCTGCAGTACGCAACGAGGGCTGGCGGTCTCTCTGGAGGGGCTGGGGACCCACACTGCTTAGAGACGTGCCCTTCTCAGCCATGTACTGGTATAACTATGAGAAGGGGAAGGCGTGGCTGTGTAAGCACAACAATATCAGAGAGCCAACGTTTGCCATCACCTTCATATCCGGAGCGGTGTCTGGATCAATCGCTTCCATAGTAACTCTTCCCTTCGACGTTGTGAAGACCAGGAGGCAGGTGGAGATAGGGGAACTCCAGGCTATGAATTTGTCGTCCAAggcctcctcctccactctcagtGTGATGACCAAGATTGTGGCTGAGAACGGAGTGGGTGGACTGTTTGTAGGTTTCCTTCCCAGGGTGATCAAGGTGGCCCCAGCCTGTGCCATTATGATCAGCTGTTATGAGTTTGGGAAAGCCTTCTTCCGCAAGCACAACCAGGAGAGGCTGCTGACCAGCACCACCTGACCTGACTAgggcctctcacacacacacaaaccaccacCATAGACAATACCAAGAACACAATCCGCCATCGCCAACAGTAGGTATTGGCTACTTCTACCTTTCCCAGGGTCCTTAGAGATTTTCAGATGTAACTTTGCATGCCTGTGTCCTCCCAGCTGCTTAGACACTCCAACACCCCTCACTGTAAAGTGTGATCTGTCATGTGACTAGCTGGAAGTAGCCAATGTTGGCGTTTAGGACCCAAGAACGCCAGGACTTGATTCTGTTCCAAAGCAGGTAATACTGGCAGACATGAAAACAATATTGAAGACAAATATTTGTAGGTAATCAATATTATTCATATTTTCTTATTTCTCAATCAAGGTATACTGCTCTTAATCACCATACTAATTGTGACaagagaaaatagtaaaagtgcacagattgtatttgaaatatcATTTTCACAACTACTTAAAAATTATTTGCATAATCTTTTTCCTGTGCACCCATGGTGAAATATCATGTTATGAAGTGCATTTAATTACACTGGCCTGTAGGTGTTAGAGACTTATCTGTAACCAGAAACTGGGGGGGTCATATTGGACAAGTGTTTTATCCCATTATGTTAGTTATTGAGGTATGGGGGTTGTGTGTACTGTGCCATCCGGGGTCTGACAGTAATAATAATCATTTGATGgatgcttatatttgtcctgtttcacacatgtacacGTGTGTATCATAcccatgtctgaaatgtgttttttgcatatcccgaCACCCTCAGAGTGGAGTCGGGGACAGTAGAGATGAGGGTCAAAGCTGTGGATGAGGCGGGATAACTTCTGGTTAGTAGTTTCTGTCCCGCAGAACCCTCTCATTCCCTGCCGCTTTCTCGATCTCAATTCATGACCCTATCACCTCATTCTCAACCCTATTGGAAGAGAAGGCCCAAGGTCCTTCAGGATACATGTTCTGTTCAGTGCCAGACTGCCAGTTTAAACCTGAAACTCTTAACTTGCACCTGTTCCAGAATCCCATATTCAATCCCCAGTCAGCCAGACATGGACTGTGAACTGTGACAACCTGTGCATGTTCTCAAAACATGTAGCAATGATATATATTTCTATTGTTTAATATATTCTACAATGATCACCTGTAGTGACACATTTCCCAACTTTGTACAGAAATACATAGAGAATAAAAGTCACATTTTGACATTTGAA

Function

NR:

description
solute carrier family 25 member 40-like

GO: NA

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967179.1 False 2423 mRNA 0.46 11 6776481 6794276
XM_036967177.1 True 2496 mRNA 0.46 11 6776481 6794278

Neighbor

gene id symbol gene type direction distance location
LOC110507788 LOC106574611 coding downstream 31808 6714243 ~ 6744673 (-)
LOC110507843 LOC106576069 coding downstream 119593 6656513 ~ 6656888 (-)
LOC110507876 rpp38 coding downstream 152514 6622171 ~ 6623967 (-)
LOC110508127 NA coding downstream 226083 6527175 ~ 6550398 (-)
cf191 cf191 coding downstream 276901 6496695 ~ 6499580 (-)
LOC118945258 NA coding upstream 71747 6862876 ~ 6869053 (-)
LOC110508277 cld12 coding upstream 107200 6901478 ~ 6905286 (-)
LOC110508304 gtpbp10 coding upstream 135179 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 coding upstream 154167 6948445 ~ 6952369 (-)
LOC118944481 LOC106575260 coding upstream 158878 6953156 ~ 6953874 (-)
G219952 NA non-coding downstream 2141 6773362 ~ 6774340 (-)
G219999 NA non-coding downstream 116370 6659745 ~ 6660111 (-)
G219988 LOC100136012 non-coding downstream 134326 6638940 ~ 6642155 (-)
G219970 fam171a1 non-coding downstream 169473 6603182 ~ 6607008 (-)
G220056 NA non-coding upstream 21408 6815686 ~ 6815896 (-)
G219936 NA non-coding upstream 22007 6816285 ~ 6816505 (-)
G220063 NA non-coding upstream 29631 6823909 ~ 6824217 (-)
G220064 NA non-coding upstream 30697 6824975 ~ 6825213 (-)
G220074 NA non-coding upstream 46244 6840522 ~ 6842132 (-)
LOC110507902 LOC106593870 other downstream 285466 6479543 ~ 6491729 (-)
LOC110534138 LOC106605946 other downstream 434868 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 437668 6332968 ~ 6338813 (-)
G219592 NA other downstream 1024387 5751724 ~ 5752094 (-)
G219591 NA other downstream 1027767 5748158 ~ 5748714 (-)
G220202 LOC106605995 other upstream 158281 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 172803 6967081 ~ 6970500 (-)
LOC110508339 NA other upstream 194704 6988898 ~ 6993845 (-)

Expression


Co-expression Network